mRNA_P-canaliculata_contig97473.23829.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97473.23829.1
Unique NamemRNA_P-canaliculata_contig97473.23829.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97473.23829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97473contigP-canaliculata_contig97473:23..1018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size996
Cds size975
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817337.7661638-CDS-P-canaliculata_contig97473:22..9971622817337.7661638-CDS-P-canaliculata_contig97473:22..997Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97473 23..997 -
1693495232.141103-CDS-P-canaliculata_contig97473:22..9971693495232.141103-CDS-P-canaliculata_contig97473:22..997Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97473 23..997 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817337.790655-UTR-P-canaliculata_contig97473:997..10181622817337.790655-UTR-P-canaliculata_contig97473:997..1018Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97473 998..1018 -
1693495232.151339-UTR-P-canaliculata_contig97473:997..10181693495232.151339-UTR-P-canaliculata_contig97473:997..1018Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97473 998..1018 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97473.23829.1prot_P-canaliculata_contig97473.23829.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97473 23..997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97473.23829.1

>prot_P-canaliculata_contig97473.23829.1 ID=prot_P-canaliculata_contig97473.23829.1|Name=mRNA_P-canaliculata_contig97473.23829.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=325bp
MPDDPLALAVRANIELRQGHPEAAARRLKPIVNSVAPDKVIAVYALSLFE
IGRQEEAIAMLTKRVEAEAKAFHSRLALARMYRQLGKRPFADKLYSQSVD
EFPNDTILMVEWLETRYEMGQRLVVRESLNRLADHTKNFDILLSAARINI
DFGDYVVAKKQLAAAEEIRGLSPGIVVEKARMALAVGQFDEAIQQLLAIA
DAVSEDAAVQLLLLEAYIGAKNAAGQVNVGKTLAKKFRGSYAQAMSRGLT
DLSKGRNREARNAFERAIKVGGETLSALQKADTLALMAQTVRNEDPETAK
TLLRQALLLDVMNPGANFVSGNIAF
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mRNA from alignment at P-canaliculata_contig97473:23..1018-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97473.23829.1 ID=mRNA_P-canaliculata_contig97473.23829.1|Name=mRNA_P-canaliculata_contig97473.23829.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=996bp|location=Sequence derived from alignment at P-canaliculata_contig97473:23..1018- (Pelvetia canaliculata dioecious)
ATAGACCGAGCGTTGGCCGAAATGCCTGATGATCCTCTCGCGCTTGCCGT
TCGTGCCAATATCGAGCTCCGGCAAGGTCATCCAGAGGCCGCGGCTAGAC
GGCTCAAGCCGATCGTAAATAGCGTTGCACCAGACAAGGTGATAGCCGTG
TATGCGCTGAGTCTTTTTGAAATTGGGCGACAAGAGGAAGCCATCGCCAT
GCTTACCAAACGCGTCGAAGCCGAGGCGAAGGCCTTTCACTCTAGATTAG
CTCTAGCGCGAATGTACAGACAGCTTGGAAAACGTCCATTTGCCGACAAA
CTCTATTCCCAATCTGTTGACGAATTTCCCAATGACACAATATTGATGGT
GGAGTGGTTGGAGACTCGATACGAGATGGGGCAGCGGCTGGTTGTTCGCG
AATCTCTAAATAGGCTTGCCGATCATACAAAGAACTTCGACATCCTTCTT
TCCGCCGCTCGCATAAATATAGATTTTGGGGACTACGTGGTCGCGAAGAA
ACAACTTGCAGCTGCCGAGGAAATTCGCGGGTTGTCCCCGGGGATTGTAG
TTGAAAAAGCACGAATGGCCTTGGCAGTGGGGCAGTTCGATGAGGCTATC
CAGCAGTTGTTAGCAATAGCAGATGCGGTCTCTGAGGATGCGGCAGTACA
GCTTCTTTTGCTGGAGGCTTATATCGGTGCAAAGAACGCCGCCGGGCAAG
TGAATGTTGGAAAGACGCTTGCAAAGAAGTTTAGAGGTTCCTACGCCCAA
GCAATGAGCAGGGGGCTAACGGACCTCTCGAAAGGACGGAATCGTGAGGC
TAGAAACGCCTTCGAACGAGCAATAAAGGTTGGTGGAGAAACGCTGTCGG
CTCTACAAAAGGCCGACACGTTAGCGTTGATGGCACAGACCGTTCGAAAC
GAGGACCCCGAAACTGCAAAGACTTTACTCAGGCAGGCATTACTATTGGA
CGTGATGAATCCCGGAGCGAACTTCGTGTCGGGAAATATTGCGTTT
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Coding sequence (CDS) from alignment at P-canaliculata_contig97473:23..1018-

>mRNA_P-canaliculata_contig97473.23829.1 ID=mRNA_P-canaliculata_contig97473.23829.1|Name=mRNA_P-canaliculata_contig97473.23829.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1950bp|location=Sequence derived from alignment at P-canaliculata_contig97473:23..1018- (Pelvetia canaliculata dioecious)
ATGCCTGATGATCCTCTCGCGCTTGCCGTTCGTGCCAATATCGAGCTCCG
GCAAGGTCATCCAGAGGCCGCGGCTAGACGGCTCAAGCCGATCGTAAATA
GCGTTGCACCAGACAAGGTGATAGCCGTGTATGCGCTGAGTCTTTTTGAA
ATTGGGCGACAAGAGGAAGCCATCGCCATGCTTACCAAACGCGTCGAAGC
CGAGGCGAAGGCCTTTCACTCTAGATTAGCTCTAGCGCGAATGTACAGAC
AGCTTGGAAAACGTCCATTTGCCGACAAACTCTATTCCCAATCTGTTGAC
GAATTTCCCAATGACACAATATTGATGGTGGAGTGGTTGGAGACTCGATA
CGAGATGGGGCAGCGGCTGGTTGTTCGCGAATCTCTAAATAGGCTTGCCG
ATCATACAAAGAACTTCGACATCCTTCTTTCCGCCGCTCGCATAAATATA
GATTTTGGGGACTACGTGGTCGCGAAGAAACAACTTGCAGCTGCCGAGGA
AATTCGCGGGTTGTCCCCGGGGATTGTAGTTGAAAAAGCACGAATGGCCT
TGGCAGTGGGGCAGTTCGATGAGGCTATCCAGCAGTTGTTAGCAATAGCA
GATGCGGTCTCTGAGGATGCGGCAGTACAGCTTCTTTTGCTGGAGGCTTA
TATCGGTGCAAAGAACGCCGCCGGGCAAGTGAATGTTGGAAAGACGCTTG
CAAAGAAGTTTAGAGGTTCCTACGCCCAAGCAATGAGCAGGGGGCTAACG
GACCTCTCGAAAGGACGGAATCGTGAGGCTAGAAACGCCTTCGAACGAGC
AATAAAGGTTGGTGGAGAAACGCTGTCGGCTCTACAAAAGGCCGACACGT
TAGCGTTGATGGCACAGACCGTTCGAAACGAGGACCCCGAAACTGCAAAG
ACTTTACTCAGGCAGGCATTACTATTGGACGTGATGAATCCCGGAGCGAA
CTTCGTGTCGGGAAATATTGCGTTTATGCCTGATGATCCTCTCGCGCTTG
CCGTTCGTGCCAATATCGAGCTCCGGCAAGGTCATCCAGAGGCCGCGGCT
AGACGGCTCAAGCCGATCGTAAATAGCGTTGCACCAGACAAGGTGATAGC
CGTGTATGCGCTGAGTCTTTTTGAAATTGGGCGACAAGAGGAAGCCATCG
CCATGCTTACCAAACGCGTCGAAGCCGAGGCGAAGGCCTTTCACTCTAGA
TTAGCTCTAGCGCGAATGTACAGACAGCTTGGAAAACGTCCATTTGCCGA
CAAACTCTATTCCCAATCTGTTGACGAATTTCCCAATGACACAATATTGA
TGGTGGAGTGGTTGGAGACTCGATACGAGATGGGGCAGCGGCTGGTTGTT
CGCGAATCTCTAAATAGGCTTGCCGATCATACAAAGAACTTCGACATCCT
TCTTTCCGCCGCTCGCATAAATATAGATTTTGGGGACTACGTGGTCGCGA
AGAAACAACTTGCAGCTGCCGAGGAAATTCGCGGGTTGTCCCCGGGGATT
GTAGTTGAAAAAGCACGAATGGCCTTGGCAGTGGGGCAGTTCGATGAGGC
TATCCAGCAGTTGTTAGCAATAGCAGATGCGGTCTCTGAGGATGCGGCAG
TACAGCTTCTTTTGCTGGAGGCTTATATCGGTGCAAAGAACGCCGCCGGG
CAAGTGAATGTTGGAAAGACGCTTGCAAAGAAGTTTAGAGGTTCCTACGC
CCAAGCAATGAGCAGGGGGCTAACGGACCTCTCGAAAGGACGGAATCGTG
AGGCTAGAAACGCCTTCGAACGAGCAATAAAGGTTGGTGGAGAAACGCTG
TCGGCTCTACAAAAGGCCGACACGTTAGCGTTGATGGCACAGACCGTTCG
AAACGAGGACCCCGAAACTGCAAAGACTTTACTCAGGCAGGCATTACTAT
TGGACGTGATGAATCCCGGAGCGAACTTCGTGTCGGGAAATATTGCGTTT
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