mRNA_P-canaliculata_contig974.23826.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig974.23826.1
Unique NamemRNA_P-canaliculata_contig974.23826.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig974.23826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig974contigP-canaliculata_contig974:25699..26403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size328
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817337.3751228-CDS-P-canaliculata_contig974:25698..258721622817337.3751228-CDS-P-canaliculata_contig974:25698..25872Pelvetia canaliculata dioeciousCDSP-canaliculata_contig974 25699..25872 -
1693495231.872386-CDS-P-canaliculata_contig974:25698..258721693495231.872386-CDS-P-canaliculata_contig974:25698..25872Pelvetia canaliculata dioeciousCDSP-canaliculata_contig974 25699..25872 -
1622817337.3876143-CDS-P-canaliculata_contig974:26250..264031622817337.3876143-CDS-P-canaliculata_contig974:26250..26403Pelvetia canaliculata dioeciousCDSP-canaliculata_contig974 26251..26403 -
1693495231.8850174-CDS-P-canaliculata_contig974:26250..264031693495231.8850174-CDS-P-canaliculata_contig974:26250..26403Pelvetia canaliculata dioeciousCDSP-canaliculata_contig974 26251..26403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig974.23826.1prot_P-canaliculata_contig974.23826.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig974 25699..26403 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig974.23826.1

>prot_P-canaliculata_contig974.23826.1 ID=prot_P-canaliculata_contig974.23826.1|Name=mRNA_P-canaliculata_contig974.23826.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=109bp
VLFAKRQPCDLRVRLRGSSLRTRVVARWLQENVLHPRTRKHKIKMKLNSP
GMKLVRETESDRRPFAGFRNRASFWKSVSTHASSLTRPCPRYGYRGGHGG
GGGRGGGG*
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mRNA from alignment at P-canaliculata_contig974:25699..26403-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig974.23826.1 ID=mRNA_P-canaliculata_contig974.23826.1|Name=mRNA_P-canaliculata_contig974.23826.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=705bp|location=Sequence derived from alignment at P-canaliculata_contig974:25699..26403- (Pelvetia canaliculata dioecious)
GTGCTCTTCGCCAAAAGACAACCTTGTGATCTCCGAGTGAGGTTGCGGGG
TTCCTCGCTTCGGACGAGAGTGGTTGCAAGATGGCTTCAAGAGAACGTCC
TCCATCCTCGAACAAGGAAACACAAAATCAAAATGAAACTCAACAGTCCC
GGGGTAAGATGTAACGGCCGGCGCGCGTGTACAGGGCGGCTTGAATCTCG
TGCGGAGCCAGAACTGCTTTCGAAGGCTCGGCCTCGCGTGTACGAAACAG
GACACTCTGTGCTTGCGCTTGCTGGAGACTATTAATAGGAGACTTCCCCC
ATATCCCTGTTGGAAACAAAGAAACGTACTGGTAGGAATAAGGAAACGAA
TATTTAGAGTGGATGGATGCTTTTCCACCGAGGCAAATGTTTTGTCGACA
TGAGAAGCAGGGCCGATCCGCTTTTGTACTCTCATTATCTCCTTTCCTTT
TTCAAAAGGAGCGCGAGTATAACATCAACCGCCCGTGAATATTGGTCAAG
TATCGGAGGCCCTCCCACCTATGACCCGCAGATGAAGCTCGTTCGAGAGA
CGGAGAGCGATCGACGGCCGTTCGCCGGGTTTCGGAATCGAGCAAGCTTC
TGGAAGAGTGTATCAACGCACGCGAGCAGCTTGACTCGGCCATGTCCAAG
ATACGGTTATCGCGGCGGTCATGGAGGGGGGGGGGGGAGGGGAGGGGGAG
GCTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig974:25699..26403-

>mRNA_P-canaliculata_contig974.23826.1 ID=mRNA_P-canaliculata_contig974.23826.1|Name=mRNA_P-canaliculata_contig974.23826.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at P-canaliculata_contig974:25699..26403- (Pelvetia canaliculata dioecious)
GTGCTCTTCGCCAAAAGACAACCTTGTGATCTCCGAGTGAGGTTGCGGGG
TTCCTCGCTTCGGACGAGAGTGGTTGCAAGATGGCTTCAAGAGAACGTCC
TCCATCCTCGAACAAGGAAACACAAAATCAAAATGAAACTCAACAGTCCC
GGGGTGCTCTTCGCCAAAAGACAACCTTGTGATCTCCGAGTGAGGTTGCG
GGGTTCCTCGCTTCGGACGAGAGTGGTTGCAAGATGGCTTCAAGAGAACG
TCCTCCATCCTCGAACAAGGAAACACAAAATCAAAATGAAACTCAACAGT
CCCGGGATGAAGCTCGTTCGAGAGACGGAGAGCGATCGACGGCCGTTCGC
CGGGTTTCGGAATCGAGCAAGCTTCTGGAAGAGTGTATCAACGCACGCGA
GCAGCTTGACTCGGCCATGTCCAAGATACGGTTATCGCGGCGGTCATGGA
GGGGGGGGGGGGAGGGGAGGGGGAGGCTAAATGAAGCTCGTTCGAGAGAC
GGAGAGCGATCGACGGCCGTTCGCCGGGTTTCGGAATCGAGCAAGCTTCT
GGAAGAGTGTATCAACGCACGCGAGCAGCTTGACTCGGCCATGTCCAAGA
TACGGTTATCGCGGCGGTCATGGAGGGGGGGGGGGGAGGGGAGGGGGAGG
CTAA
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