mRNA_P-canaliculata_contig974.23824.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig974.23824.1
Unique NamemRNA_P-canaliculata_contig974.23824.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig974.23824.1 vs. uniprot
Match: A0A6H5JV51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV51_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 1.130e-51
Identity = 132/352 (37.50%), Postives = 185/352 (52.56%), Query Frame = 2 
Query:   32 TITPIRRPFEEELWLLLVGYRHWVMVAMVQLLSSGGCASCKTVNPFAKSLLHKEAEMKNVSKPESEQVSGGELAEQAPAHWLLAWYVCGGHAKPPSL-LREAAEGMQQAVTCLMGSG-----------------SSLELVL---------------EVEEALESAGQSGQGMVGDIFEPCLGVAWLLTSRAALGECERVLARSILRQEDLEGVFGPRR------SSDAPLRSR----MEAVLQGLAALEDMVWLAGLQPPLLHVHDGRDLRDLLERVRVWLEGVDGRWRRTKNEMEALTYRSDSVGGDADADIDAGTGTDAAVTVVAGCKVLLEDFGDRRDGICRGLASLVA 958
            ++  +RRPFE ELWLL++GYRHWVMVAMV + S+  C+SC   N         +A++K  ++             QA A WLLAWY CGG+ KPP     E  E ++Q  TCL                     SSL   L               +V  AL++AG++GQG++G IF P L VAWLLTSR A+  CE VL+ S+LR+EDL+G F          S++  + +R    +E++LQGLAALED+VWL  ++PP+ HVH G+ LRDLL+R + W+ G+ G+  R + E                   D  + T  A   + G + L+ DF  R+D I + L  L+A
Sbjct:  813 SLPTLRRPFESELWLLVLGYRHWVMVAMVYIFSTDSCSSCVPSNA--------DADIKERNQ------------RQASAVWLLAWYACGGYTKPPHANFSEMEEAVRQMTTCLTECSERDKVNISAKLPTEEEKSSLAEALKTGNATFASPVSAGVQVAMALKAAGEAGQGLMGAIFSPYLAVAWLLTSRLAVCNCEIVLSCSVLREEDLDGAFRAATVTSSVISAEESMHTRRSCCLESILQGLAALEDLVWLCSVRPPMSHVHQGQHLRDLLKRTKAWVSGLPGKTTRLQGE-------------------DGVSKTPLAADHLCGDQSLV-DFRYRKDAISQRLGQLLA 1124
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BLAST of mRNA_P-canaliculata_contig974.23824.1 vs. uniprot
Match: D7FWC0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC0_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 6.130e-48
Identity = 126/353 (35.69%), Postives = 174/353 (49.29%), Query Frame = 2 
Query:   32 TITPIRRPFEEELWLLLVGYRHWVMVAMVQLLSSGGCASCKTVNPFAKSLLHKEAEMKNVSKPESEQVSGGELAEQAPAHWLLAWYVCGGHAKPPSL-LREAAEGMQQAVTCLMG------------------------------SGSSLELVLEVEEALESAGQSGQGMVGDIFEPCLGVAWLLTSRAALGECERVLARSILRQEDLEGVFGPRR------SSDAPLRSR----MEAVLQGLAALEDMVWLAGLQPPLLHVHDGRDLRDLLERVRVWLEGVDGRW-RRTKNEMEALTYRSDSVGGDADADIDAGTGTDAAVTVVAGCKVLLEDFGDRRDGICRGLASLVAAV 964
            ++   RRPFE ELWLL++GYRHWVMVAMV + S+   + C   +  A                E  Q        Q+ A WLLAWY CGG+ KPP     E  E ++Q  TCL                                S S +   ++V  AL++AG++GQG++G+IF PCL VAWLLTSR A+  CE VL  S+LRQEDL+G F          S++     R    +E++LQGLAALED+VWL  ++PP+ HVH G+ LR LL+R + W+ G+ G    + +  +      +D + GD                      V L DF  R+D I + L  L+A +
Sbjct:  769 SLPTFRRPFESELWLLVLGYRHWVMVAMVHIFSTDSSSPCVAGDTDA-------------GIKERRQ-------RQSSAVWLLAWYACGGYTKPPHANFSEMEEAVRQMTTCLTECSERVNISAKPPTEDENSSSAEAFKTGDATSASPVSAGVQVAMALKAAGEAGQGLMGEIFSPCLAVAWLLTSRLAVCNCEIVLGSSVLRQEDLDGAFRTATVTSTWTSAEESTHKRRSCCLESILQGLAALEDLVWLCTMRPPMSHVHQGQHLRALLKRTKAWVSGLLGNTCLQGEGGVSKTPVAADHLCGDQSL-------------------VDLVDFRSRKDAISQRLGQLLAGL 1082
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig974.23824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JV51_9PHAE1.130e-5137.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWC0_ECTSI6.130e-4835.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig974contigP-canaliculata_contig974:16987..20785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_003810.1
Exons4
Model size1864
Cds size879
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig974.23824.1prot_P-canaliculata_contig974.23824.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig974 17869..20682 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817337.419894-UTR-P-canaliculata_contig974:16986..178681622817337.419894-UTR-P-canaliculata_contig974:16986..17868Pelvetia canaliculata dioeciousUTRP-canaliculata_contig974 16987..17868 -
1693495231.9016218-UTR-P-canaliculata_contig974:16986..178681693495231.9016218-UTR-P-canaliculata_contig974:16986..17868Pelvetia canaliculata dioeciousUTRP-canaliculata_contig974 16987..17868 -
1622817337.4853182-UTR-P-canaliculata_contig974:20682..207851622817337.4853182-UTR-P-canaliculata_contig974:20682..20785Pelvetia canaliculata dioeciousUTRP-canaliculata_contig974 20683..20785 -
1693495231.9632208-UTR-P-canaliculata_contig974:20682..207851693495231.9632208-UTR-P-canaliculata_contig974:20682..20785Pelvetia canaliculata dioeciousUTRP-canaliculata_contig974 20683..20785 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817337.4342084-CDS-P-canaliculata_contig974:17868..182011622817337.4342084-CDS-P-canaliculata_contig974:17868..18201Pelvetia canaliculata dioeciousCDSP-canaliculata_contig974 17869..18201 -
1693495231.9174485-CDS-P-canaliculata_contig974:17868..182011693495231.9174485-CDS-P-canaliculata_contig974:17868..18201Pelvetia canaliculata dioeciousCDSP-canaliculata_contig974 17869..18201 -
1622817337.4480631-CDS-P-canaliculata_contig974:18965..191721622817337.4480631-CDS-P-canaliculata_contig974:18965..19172Pelvetia canaliculata dioeciousCDSP-canaliculata_contig974 18966..19172 -
1693495231.9296196-CDS-P-canaliculata_contig974:18965..191721693495231.9296196-CDS-P-canaliculata_contig974:18965..19172Pelvetia canaliculata dioeciousCDSP-canaliculata_contig974 18966..19172 -
1622817337.4621463-CDS-P-canaliculata_contig974:19564..198571622817337.4621463-CDS-P-canaliculata_contig974:19564..19857Pelvetia canaliculata dioeciousCDSP-canaliculata_contig974 19565..19857 -
1693495231.9400792-CDS-P-canaliculata_contig974:19564..198571693495231.9400792-CDS-P-canaliculata_contig974:19564..19857Pelvetia canaliculata dioeciousCDSP-canaliculata_contig974 19565..19857 -
1622817337.4744728-CDS-P-canaliculata_contig974:20636..206821622817337.4744728-CDS-P-canaliculata_contig974:20636..20682Pelvetia canaliculata dioeciousCDSP-canaliculata_contig974 20637..20682 -
1693495231.9525917-CDS-P-canaliculata_contig974:20636..206821693495231.9525917-CDS-P-canaliculata_contig974:20636..20682Pelvetia canaliculata dioeciousCDSP-canaliculata_contig974 20637..20682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig974.23824.1

>prot_P-canaliculata_contig974.23824.1 ID=prot_P-canaliculata_contig974.23824.1|Name=mRNA_P-canaliculata_contig974.23824.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=293bp
MVAMVQLLSSGGCASCKTVNPFAKSLLHKEAEMKNVSKPESEQVSGGELA
EQAPAHWLLAWYVCGGHAKPPSLLREAAEGMQQAVTCLMGSGSSLELVLE
VEEALESAGQSGQGMVGDIFEPCLGVAWLLTSRAALGECERVLARSILRQ
EDLEGVFGPRRSSDAPLRSRMEAVLQGLAALEDMVWLAGLQPPLLHVHDG
RDLRDLLERVRVWLEGVDGRWRRTKNEMEALTYRSDSVGGDADADIDAGT
GTDAAVTVVAGCKVLLEDFGDRRDGICRGLASLVAAVKPLAR*
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mRNA from alignment at P-canaliculata_contig974:16987..20785-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig974.23824.1 ID=mRNA_P-canaliculata_contig974.23824.1|Name=mRNA_P-canaliculata_contig974.23824.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3799bp|location=Sequence derived from alignment at P-canaliculata_contig974:16987..20785- (Pelvetia canaliculata dioecious)
GCAGCAGGGGTTAGGCCCCCCTCGTGGCGCCACGATTACCCCAATCCGGC
GACCCTTCGAGGAGGAATTGTGGCTGCTACTCGTGGGCTACCGGCACTGG
GTGATGGTGGCTATGGTGCAGCTCTTGTCGTCGGGGGGATGCGCTTCCTG
TGAGCCTTCGACAAACCTGAAGTTGAAGTTGAAGTTGAACCTCTCTCGAA
GAGGCACGGCTCGCGCAGCCATTTGGTGTGTAACTTAATGCGCTGGGATT
GCATTGTCCATGGTCATGCCATGTCGTGTCCCCTTCTGCGTCGCCAGTTG
TTAGTATTAATAGTGGTTAATAGTAGTGTGATCGGTTGCCACGGCCGGGT
GACACTGGTACCTTGAAAGATATTGATGTACAGATACTCATCGTTCAGCC
ACATCTTGGACTAGGAACATAAAAGTCTTCTATCCCTTCAAAGGGTCTAT
TTATGACGAATCGAAACGATTGCTCACCCACCTTCCCCTGCGAAATCCAT
AGCTAGCAAGCTCCAATGAACGCGTAGTTATCACGCCTTGAAGCGAGGCG
TTCGCCGATCTTCCCAACCAGCCGTGATTGTCAATACCTGTTCCGCCGAT
TTGTCGCTTCATAACTTCAACCGCTCACCTTCTAGACCAACTCTCTAACA
CTCTTATGATTACCCCACTCCAAATTAAAGCATGTGGAGCCATTGTGATT
CTCTTCAATACAATGATAGTTAGATCGCTCTTGGCCGTGCGATGGGCGGC
CGTACTAGGTACCGGTATGTCCCTATATTAAACGAACGTGTCATCACCTG
GTTCCCAGGAGAGCTCTGTACGTATTTGCAGCACATATTCTTTGACATAT
TATATTTAAAGTGTCTATATTTTGATATATTCTGATCGTGTGACCGCGCG
CTCCCGCCGTGGTTATTTTTGTCCTCAGGTAAGACCGTGAACCCGTTCGC
GAAAAGCCTTCTACACAAGGAGGCAGAGATGAAGAATGTATCGAAGCCGG
AGTCGGAACAGGTCAGTGGAGGGGAGCTCGCGGAGCAAGCCCCTGCCCAC
TGGCTTCTGGCTTGGTACGTCTGCGGAGGGCATGCGAAACCCCCCTCTCT
TCTGAGGGAAGCCGCGGAGGGCATGCAGCAGGCGGTAACGTGTCTCATGG
GATCGGGATCTTCGTTGGAGTTGGTTCTGGAGGTGGAGGAGGCGCTGGAA
TCAGCGGGACAGTCGGGACAGGTGGGCGGTGGCGGTTGGGGCGGTAACCC
TCGCCCTCGATTGCCTAGAAGATTGTGAGGGCATGACGAATACTACTGTA
CATGTTGCAGGGTAGTGAGGAAGTTCGCGGTTGGTTTTCCTCGATAGCGT
GACCCAATCCAAAGTCGTCGAAAGACCTGTTGCACACGTGACGCACCCAA
ATATATATTTCAACAGGAACTCGCACAAAGGCCGGGTATCAGAGTGCCTC
ATATATTTAACATTTAAGTTGCCGTTAAAGGATCAGGGCACAAGCGTGCA
AAAATGGATGTAAATATATATGAAGGTGAATGCTCAACAAACAAACAAAA
CGTTCCTGCTTTTTGTCTCAAAAGTCTCGCTTTTTTTCCCCCTTAATATT
ATGCTTCGAGCAGGGTATGGTGGGGGACATCTTTGAGCCCTGCTTGGGCG
TGGCGTGGTTGCTTACCTCTCGAGCAGCACTCGGTGAGTGCGAGAGAGTC
TTGGCGCGCAGCATCCTGCGGCAGGAGGACCTGGAAGGCGTGTTTGGGCC
GAGGAGGTCTTCCGACGCGCCTTTGCGTTCCAGAATGGAGGCGGTTCTGC
AAGGCCTCGCCGCGCTTGAGGTACGCGCGCGTTCTGCTCATTGTAATATT
ATTTGTGCCGGCGAATGCATGGTGTATCTGCTACAGTAACGCCCCCTCTT
CTTTATAAGGGGATTGATAACCGGTAGCCCCGCTCTCGATTTTGTCAACA
CCAAACGCCGAGAGTATCTAGACCTTGCCAAGATTTTCGTGGAGACCAGC
AGCTTGCTCCCTTGGTACAGTACCTTCTATGTGCTGCCGATAAATGTCTC
CTACTGTAAGAAGAGGAAGATACCTAAATTTTCCCCAGGGTCCATCTACA
AAGAGATGTCGCCAACGAGCGTGTAGGCATTGCTTGTTCGAAGCCTTTCC
CGGTTCCATTTTCGTGCAAGATTTTCTCATGACAACGGCGCGAAACGAAT
ACCCAGAACGGCGCAATAAACGCAATAAACGCAATACTCGGGCATTCCCC
CCAAAAATGAATGGGTATTCCCCCGACCTCTTGACCTAATAATGGACAGC
CGCGACACAATACTATACTATACCATACTAATGTTATTAATAGATATCTT
ATCATCCAAAAGACTTGCAAAATACGCTACCATACCCTTTTCCGTCCTGA
GATACATTTCAGGCTTGCCGAGCGTTGACAGCGGTTTATTTATAGTGAGC
GTACGCGCGCTCTCAAGTGTAACTCAACCCGAAGAGGTCACCACAGTCAA
ACCTACCCTGGAATTGGGTGCTGTTTTCCTCTGTCTACGGTTGTACGTAT
ATATGCCCTGTAAATGCTTTCTGTCGCGCATTAGGATATGGTGTGGTTGG
CCGGGCTCCAGCCTCCTTTGCTTCACGTCCACGACGGGCGAGATCTGAGA
GACCTCTTGGAGCGCGTGAGGGTTTGGCTCGAGGGGGTTGACGGTCGGTG
GCGGAGGACGAAAAATGAGATGGAGGCGTTAACCTATCGGAGCGACTCTG
TCGGCGGTGATGCTGATGCTGATATTGATGCTGGCACGGGCACCGACGCT
GCGGTGACAGTCGTGGCCGGGTGCAAGGTGTTGTTGGAAGACTTCGGTGA
CAGGAGAGACGGGATCTGCCGTGGTCTGGCGTCTTTGGTTGCTGCGGTGA
AGCCTCTGGCGCGCTGAAGGAAGCCAGGGTTAGCCACGGTAGGGTTATAT
GATAACTATGACCGTTGCTGCACCCCCCATACCGGTGCGCGTCTAGTGGA
GGGGCAGGTGATGTCATCCACGCCACGGTTCGCGCTGTTACGTGGAAACC
ATGCCAACTGTAGCTCGGACGCTGAAACGCACCCGCGTTTAGCCGCTGGT
GTGCGTTGCGAGCGTAGAGACTCTGGTTGACCTATTATATTAGTTAATAG
CGTCGGTCGTGTTTCTAGGAACTTGCCGACGAACCATTGCCCGAAATGCA
GTGGTAGAGATGGCAAAATCGCGACGATCTACGGTGTAATGATGTAGATC
TAATCAACAGGATGTCCTCTTACAGTATAGTATAGTAATGAGAGTATCGC
GTAAGAGTTCTACATGTAGCACCGTACACACAGATCCTGGAAGGTATTTC
ATAATGCTCTATGTTTTTATATTTGCTATGAGATAATGCTCTATGAGATA
ATTTGACCAATTCACGACCGCATAGAAAGTATTGTAAGCATTTGATCGAT
CATTTCTTTCAACTTTCAACTTGTTTTTCTAAAAAAACGAGCAGGTAAAA
TCCGCTTGTGTTTTCGGAGTTAGTTCAATGATAGGCTCTGTAATAGATGC
AAGTGGTTGCGATGCAATTTACCACCGGCTAGGCTGTATTACCGGATGTT
ATTCTAAACTGAAATTTATATTACCTGATACGTGGTATGTTGTGGTAAGG
TAATATGGAATGTGCGTCGTAACATAACTTAATATACTGCCCAGCAGACC
ACGTACCGAACTGGCAACCACGTACATTACTGGGTAAGGCTGAGGCCCGA
TCGATTAATGTGAAGAGCGCGCACACACACACACAAGCTCGAACCTCGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig974:16987..20785-

>mRNA_P-canaliculata_contig974.23824.1 ID=mRNA_P-canaliculata_contig974.23824.1|Name=mRNA_P-canaliculata_contig974.23824.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1758bp|location=Sequence derived from alignment at P-canaliculata_contig974:16987..20785- (Pelvetia canaliculata dioecious)
ATGGTGGCTATGGTGCAGCTCTTGTCGTCGGGGGGATGCGCTTCCTATGG
TGGCTATGGTGCAGCTCTTGTCGTCGGGGGGATGCGCTTCCTGTAAGACC
GTGAACCCGTTCGCGAAAAGCCTTCTACACAAGGAGGCAGAGATGAAGAA
TGTATCGAAGCCGGAGTCGGAACAGGTCAGTGGAGGGGAGCTCGCGGAGC
AAGCCCCTGCCCACTGGCTTCTGGCTTGGTACGTCTGCGGAGGGCATGCG
AAACCCCCCTCTCTTCTGAGGGAAGCCGCGGAGGGCATGCAGCAGGCGGT
AACGTGTCTCATGGGATCGGGATCTTCGTTGGAGTTGGTTCTGGAGGTGG
AGGAGGCGCTGGAATCAGCGGGACAGTCGGGACAGGTAAGACCGTGAACC
CGTTCGCGAAAAGCCTTCTACACAAGGAGGCAGAGATGAAGAATGTATCG
AAGCCGGAGTCGGAACAGGTCAGTGGAGGGGAGCTCGCGGAGCAAGCCCC
TGCCCACTGGCTTCTGGCTTGGTACGTCTGCGGAGGGCATGCGAAACCCC
CCTCTCTTCTGAGGGAAGCCGCGGAGGGCATGCAGCAGGCGGTAACGTGT
CTCATGGGATCGGGATCTTCGTTGGAGTTGGTTCTGGAGGTGGAGGAGGC
GCTGGAATCAGCGGGACAGTCGGGACAGGGTATGGTGGGGGACATCTTTG
AGCCCTGCTTGGGCGTGGCGTGGTTGCTTACCTCTCGAGCAGCACTCGGT
GAGTGCGAGAGAGTCTTGGCGCGCAGCATCCTGCGGCAGGAGGACCTGGA
AGGCGTGTTTGGGCCGAGGAGGTCTTCCGACGCGCCTTTGCGTTCCAGAA
TGGAGGCGGTTCTGCAAGGCCTCGCCGCGCTTGAGGGTATGGTGGGGGAC
ATCTTTGAGCCCTGCTTGGGCGTGGCGTGGTTGCTTACCTCTCGAGCAGC
ACTCGGTGAGTGCGAGAGAGTCTTGGCGCGCAGCATCCTGCGGCAGGAGG
ACCTGGAAGGCGTGTTTGGGCCGAGGAGGTCTTCCGACGCGCCTTTGCGT
TCCAGAATGGAGGCGGTTCTGCAAGGCCTCGCCGCGCTTGAGGATATGGT
GTGGTTGGCCGGGCTCCAGCCTCCTTTGCTTCACGTCCACGACGGGCGAG
ATCTGAGAGACCTCTTGGAGCGCGTGAGGGTTTGGCTCGAGGGGGTTGAC
GGTCGGTGGCGGAGGACGAAAAATGAGATGGAGGCGTTAACCTATCGGAG
CGACTCTGTCGGCGGTGATGCTGATGCTGATATTGATGCTGGCACGGGCA
CCGACGCTGCGGTGACAGTCGTGGCCGGGTGCAAGGTGTTGTTGGAAGAC
TTCGGTGACAGGAGAGACGGGATCTGCCGTGGTCTGGCGTCTTTGGTTGC
TGCGGTGAAGCCTCTGGCGCGCTGAGATATGGTGTGGTTGGCCGGGCTCC
AGCCTCCTTTGCTTCACGTCCACGACGGGCGAGATCTGAGAGACCTCTTG
GAGCGCGTGAGGGTTTGGCTCGAGGGGGTTGACGGTCGGTGGCGGAGGAC
GAAAAATGAGATGGAGGCGTTAACCTATCGGAGCGACTCTGTCGGCGGTG
ATGCTGATGCTGATATTGATGCTGGCACGGGCACCGACGCTGCGGTGACA
GTCGTGGCCGGGTGCAAGGTGTTGTTGGAAGACTTCGGTGACAGGAGAGA
CGGGATCTGCCGTGGTCTGGCGTCTTTGGTTGCTGCGGTGAAGCCTCTGG
CGCGCTGA
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