mRNA_P-canaliculata_contig97354.23823.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97354.23823.1
Unique NamemRNA_P-canaliculata_contig97354.23823.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig97354.23823.1 vs. uniprot
Match: UPI0016728BED (hypothetical protein n=1 Tax=Streptomyces hiroshimensis TaxID=66424 RepID=UPI0016728BED)

HSP 1 Score: 53.5 bits (127), Expect = 2.120e-6
Identity = 31/98 (31.63%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:    1 MKHIPTEIRSYIRFFAFFIGNGSLGAVFNEFPDYDT-LLDSEDFLPSLVAVFVNNLDLEGKRCV---GPPKKCAWQYVRMQLDAEFKPDLQYGSIETD 282
            M H+PT++R+ +RFFAF++GNG+L     +  DY   LL+S   L  + A+F N L+++ +      G  +  A Q++R + D +++ +  +   ET+
Sbjct:    1 MAHLPTDVRAALRFFAFYLGNGTLDLELLDGIDYRARLLESGSDLEMVFAIFTNVLEVDDQGQTVNDGDAQYRAAQWIRRRCDPDYQVEPPFEPWETE 98
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BLAST of mRNA_P-canaliculata_contig97354.23823.1 vs. uniprot
Match: A0A2Z4UWG4_9ACTN (Uncharacterized protein n=1 Tax=Streptomyces sp. ICC1 TaxID=2099583 RepID=A0A2Z4UWG4_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 2.970e-6
Identity = 32/98 (32.65%), Postives = 55/98 (56.12%), Query Frame = 1 
Query:    1 MKHIPTEIRSYIRFFAFFIGNGSLGAVFNEFPDYDT-LLDSEDFLPSLVAVFVNNLDLEGKRCV---GPPKKCAWQYVRMQLDAEFKPDLQYGSIETD 282
            M H+PT++R+ +RFFAF++GNG+L     E  DY   LL+    L  + A+F N L+++        G  +  A Q++R  LD  ++ +  + + ET+
Sbjct:    1 MTHLPTDVRAALRFFAFYLGNGTLDVDLLEGIDYRAHLLEFGSDLEMIFAIFANVLEVDDHGQTLNDGDAQYRAAQWIRRSLDPGYRVEPPFEAWETE 98
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BLAST of mRNA_P-canaliculata_contig97354.23823.1 vs. uniprot
Match: UPI001F27B19F (hypothetical protein n=1 Tax=Streptomyces sp. NRRL S-237 TaxID=1463895 RepID=UPI001F27B19F)

HSP 1 Score: 53.1 bits (126), Expect = 3.930e-6
Identity = 32/98 (32.65%), Postives = 56/98 (57.14%), Query Frame = 1 
Query:    1 MKHIPTEIRSYIRFFAFFIGNGSLGAVFNEFPDY-DTLLDSEDFLPSLVAVFVNNLDLEGKRCV---GPPKKCAWQYVRMQLDAEFKPDLQYGSIETD 282
            + H+PT++R+ +RFFAFF+GNG+L     E  DY + L      L  ++AVF N L+++        G  +  A Q++R + D E++ +  + + ET+
Sbjct:   14 VAHLPTDVRAALRFFAFFLGNGTLDVELLEGIDYREHLFTYGSDLEMVIAVFTNVLEVDDHGRTLNDGDAQYRAAQWIRGRCDPEYRVEPPFEAWETE 111
[Close]
BLAST of mRNA_P-canaliculata_contig97354.23823.1 vs. uniprot
Match: UPI0004BD0DF0 (hypothetical protein n=1 Tax=unclassified Streptomyces TaxID=2593676 RepID=UPI0004BD0DF0)

HSP 1 Score: 50.1 bits (118), Expect = 4.360e-5
Identity = 33/98 (33.67%), Postives = 56/98 (57.14%), Query Frame = 1 
Query:    1 MKHIPTEIRSYIRFFAFFIGNGSLGAVFNEFPDY-DTLLDSEDFLPSLVAVFVNNL--DLEGKRCV-GPPKKCAWQYVRMQLDAEFKPDLQYGSIETD 282
            M H+P+++R+ +RFFAFF+GNG+L     +  DY + LL     L  + A+F N L  D +G+    G  +  A Q+VR + D +++    + + ET+
Sbjct:    1 MTHLPSDVRAALRFFAFFLGNGTLAVELLDGIDYREHLLTFGSDLEMIFAIFANVLRVDDDGQTLNDGDAQYRAAQWVRARCDPDYEVQPPFEAWETE 98
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97354.23823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI0016728BED2.120e-631.63hypothetical protein n=1 Tax=Streptomyces hiroshim... [more]
A0A2Z4UWG4_9ACTN2.970e-632.65Uncharacterized protein n=1 Tax=Streptomyces sp. I... [more]
UPI001F27B19F3.930e-632.65hypothetical protein n=1 Tax=Streptomyces sp. NRRL... [more]
UPI0004BD0DF04.360e-533.67hypothetical protein n=1 Tax=unclassified Streptom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97354contigP-canaliculata_contig97354:540..1019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size480
Cds size480
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817337.338968-CDS-P-canaliculata_contig97354:539..10191622817337.338968-CDS-P-canaliculata_contig97354:539..1019Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97354 540..1019 -
1693495231.8642232-CDS-P-canaliculata_contig97354:539..10191693495231.8642232-CDS-P-canaliculata_contig97354:539..1019Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97354 540..1019 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97354.23823.1prot_P-canaliculata_contig97354.23823.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97354 540..1019 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97354.23823.1

>prot_P-canaliculata_contig97354.23823.1 ID=prot_P-canaliculata_contig97354.23823.1|Name=mRNA_P-canaliculata_contig97354.23823.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=160bp
MKHIPTEIRSYIRFFAFFIGNGSLGAVFNEFPDYDTLLDSEDFLPSLVAV
FVNNLDLEGKRCVGPPKKCAWQYVRMQLDAEFKPDLQYGSIETDPTRHDD
YRQDICQFARHIAVGTFPRLQETGGYLDYWTSGSGLELLFAVYCNVAELD
RDLRVSNHEF
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mRNA from alignment at P-canaliculata_contig97354:540..1019-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97354.23823.1 ID=mRNA_P-canaliculata_contig97354.23823.1|Name=mRNA_P-canaliculata_contig97354.23823.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=480bp|location=Sequence derived from alignment at P-canaliculata_contig97354:540..1019- (Pelvetia canaliculata dioecious)
ATGAAACATATTCCAACTGAAATCCGTAGTTACATTCGTTTCTTTGCGTT
CTTCATTGGCAATGGATCCCTCGGCGCTGTCTTCAACGAGTTCCCCGATT
ACGACACACTGCTTGATTCGGAAGACTTTCTGCCATCTTTAGTTGCCGTT
TTTGTCAACAATCTCGATCTAGAGGGCAAGAGATGCGTCGGGCCACCAAA
AAAGTGCGCTTGGCAATACGTCAGGATGCAACTAGACGCTGAATTTAAGC
CGGACCTGCAGTATGGCAGCATTGAAACTGACCCAACCCGACACGACGAT
TATCGACAGGACATCTGTCAGTTTGCGCGACATATTGCTGTCGGGACATT
CCCGCGATTACAAGAGACCGGGGGCTACCTAGATTACTGGACGTCTGGAA
GCGGGTTGGAATTGCTGTTTGCCGTCTATTGCAATGTGGCCGAACTGGAC
CGCGACTTACGCGTTTCCAATCACGAATTT
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Coding sequence (CDS) from alignment at P-canaliculata_contig97354:540..1019-

>mRNA_P-canaliculata_contig97354.23823.1 ID=mRNA_P-canaliculata_contig97354.23823.1|Name=mRNA_P-canaliculata_contig97354.23823.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at P-canaliculata_contig97354:540..1019- (Pelvetia canaliculata dioecious)
ATGAAACATATTCCAACTGAAATCCGTAGTTACATTCGTTTCTTTGCGTT
CTTCATTGGCAATGGATCCCTCGGCGCTGTCTTCAACGAGTTCCCCGATT
ACGACACACTGCTTGATTCGGAAGACTTTCTGCCATCTTTAGTTGCCGTT
TTTGTCAACAATCTCGATCTAGAGGGCAAGAGATGCGTCGGGCCACCAAA
AAAGTGCGCTTGGCAATACGTCAGGATGCAACTAGACGCTGAATTTAAGC
CGGACCTGCAGTATGGCAGCATTGAAACTGACCCAACCCGACACGACGAT
TATCGACAGGACATCTGTCAGTTTGCGCGACATATTGCTGTCGGGACATT
CCCGCGATTACAAGAGACCGGGGGCTACCTAGATTACTGGACGTCTGGAA
GCGGGTTGGAATTGCTGTTTGCCGTCTATTGCAATGTGGCCGAACTGGAC
CGCGACTTACGCGTTTCCAATCACGAATTTATGAAACATATTCCAACTGA
AATCCGTAGTTACATTCGTTTCTTTGCGTTCTTCATTGGCAATGGATCCC
TCGGCGCTGTCTTCAACGAGTTCCCCGATTACGACACACTGCTTGATTCG
GAAGACTTTCTGCCATCTTTAGTTGCCGTTTTTGTCAACAATCTCGATCT
AGAGGGCAAGAGATGCGTCGGGCCACCAAAAAAGTGCGCTTGGCAATACG
TCAGGATGCAACTAGACGCTGAATTTAAGCCGGACCTGCAGTATGGCAGC
ATTGAAACTGACCCAACCCGACACGACGATTATCGACAGGACATCTGTCA
GTTTGCGCGACATATTGCTGTCGGGACATTCCCGCGATTACAAGAGACCG
GGGGCTACCTAGATTACTGGACGTCTGGAAGCGGGTTGGAATTGCTGTTT
GCCGTCTATTGCAATGTGGCCGAACTGGACCGCGACTTACGCGTTTCCAA
TCACGAATTT
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