mRNA_P-canaliculata_contig9735.23821.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9735.23821.1
Unique NamemRNA_P-canaliculata_contig9735.23821.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig9735.23821.1 vs. uniprot
Match: A0A6G1LHT3_9PEZI (RNA-binding domain-containing protein n=1 Tax=Teratosphaeria nubilosa TaxID=161662 RepID=A0A6G1LHT3_9PEZI)

HSP 1 Score: 145 bits (367), Expect = 5.050e-41
Identity = 80/99 (80.81%), Postives = 83/99 (83.84%), Query Frame = 1
Query:    1 GLAWHTDDDTLRHKFEEFGQVDEAVSHPLLPMVVVKDRETGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVDRASERAPGGGXXX----GRGGY 285
            GLAWHTDD TLR KFEE+GQVDEAV        VVKDR+TGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVD+ASERAPG G XX    GRGGY
Sbjct:    8 GLAWHTDDQTLRTKFEEYGQVDEAV--------VVKDRDTGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVDKASERAPGSGGXXXXXGGRGGY 98          
BLAST of mRNA_P-canaliculata_contig9735.23821.1 vs. uniprot
Match: A0A4U0TXT9_9PEZI (RRM domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=A0A4U0TXT9_9PEZI)

HSP 1 Score: 139 bits (349), Expect = 5.420e-38
Identity = 68/87 (78.16%), Postives = 77/87 (88.51%), Query Frame = 1
Query:    1 GLAWHTDDDTLRHKFEEFGQVDEAVSHPLLPMVVVKDRETGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVDRASERAPGGG 261
            GLAWHTDD TLR KFEEFGQVDEA+        VVKDR+TGRSRGFGFVRF++D+A+++AIAAMNNVEFDGRTIRVD+ASERAPGGG
Sbjct:    8 GLAWHTDDQTLRQKFEEFGQVDEAI--------VVKDRDTGRSRGFGFVRFSEDSASDAAIAAMNNVEFDGRTIRVDKASERAPGGG 86          
BLAST of mRNA_P-canaliculata_contig9735.23821.1 vs. uniprot
Match: M2N8A3_BAUPA (RRM domain-containing protein n=1 Tax=Baudoinia panamericana (strain UAMH 10762) TaxID=717646 RepID=M2N8A3_BAUPA)

HSP 1 Score: 137 bits (346), Expect = 6.430e-38
Identity = 69/87 (79.31%), Postives = 76/87 (87.36%), Query Frame = 1
Query:    1 GLAWHTDDDTLRHKFEEFGQVDEAVSHPLLPMVVVKDRETGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVDRASERAPGGG 261
            GLAWHTDD TLR KFEEFGQV+EA+        V+KDR+TGRSRGFGFVRFA+DAAA+SAIAAMNNVEFDGRTIRVD+ASERA GGG
Sbjct:    9 GLAWHTDDQTLRAKFEEFGQVEEAI--------VIKDRDTGRSRGFGFVRFAEDAAADSAIAAMNNVEFDGRTIRVDKASERAQGGG 87          
BLAST of mRNA_P-canaliculata_contig9735.23821.1 vs. uniprot
Match: UPI000CE18714 (glycine-rich RNA-binding, abscisic acid-inducible protein-like n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE18714)

HSP 1 Score: 135 bits (341), Expect = 4.230e-37
Identity = 67/86 (77.91%), Postives = 75/86 (87.21%), Query Frame = 1
Query:    1 GLAWHTDDDTLRHKFEEFGQVDEAVSHPLLPMVVVKDRETGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVDRASERAPGG 258
            GLAWHTDD TLR KFEEFGQVDEA+        VVKDR+TGRSRGFGFVRF +D+A+++AIAAMNNVEFDGRTIRVD+ASERAPGG
Sbjct:    8 GLAWHTDDQTLRAKFEEFGQVDEAI--------VVKDRDTGRSRGFGFVRFTEDSASDAAIAAMNNVEFDGRTIRVDKASERAPGG 85          
BLAST of mRNA_P-canaliculata_contig9735.23821.1 vs. uniprot
Match: A0A6A6PYZ6_9PEZI (RRM domain-containing protein n=1 Tax=Neohortaea acidophila TaxID=245834 RepID=A0A6A6PYZ6_9PEZI)

HSP 1 Score: 134 bits (336), Expect = 2.070e-36
Identity = 67/85 (78.82%), Postives = 73/85 (85.88%), Query Frame = 1
Query:    1 GLAWHTDDDTLRHKFEEFGQVDEAVSHPLLPMVVVKDRETGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVDRASERAPG 255
            GLAWHTDD TLR KFEEFGQVDEA+        VVKDR+TGRSRGFGFVRFA+D+AA+SAIAAMNNVEFDGRTIRVD+ASER  G
Sbjct:    8 GLAWHTDDQTLRQKFEEFGQVDEAI--------VVKDRDTGRSRGFGFVRFAEDSAADSAIAAMNNVEFDGRTIRVDKASERGAG 84          
BLAST of mRNA_P-canaliculata_contig9735.23821.1 vs. uniprot
Match: M2YN31_PSEFD (RRM domain-containing protein n=2 Tax=Pseudocercospora TaxID=131324 RepID=M2YN31_PSEFD)

HSP 1 Score: 133 bits (335), Expect = 4.150e-36
Identity = 68/85 (80.00%), Postives = 73/85 (85.88%), Query Frame = 1
Query:    1 GLAWHTDDDTLRHKFEEFGQVDEAVSHPLLPMVVVKDRETGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVDRASERAPG 255
            GLAWHTDD TLR KFEEFGQVDEAV        VVKDR+TGRSRGFGFVRFA+DAAA+SAIAAMNNVEFDGRTIRVD+AS+R  G
Sbjct:    8 GLAWHTDDQTLRTKFEEFGQVDEAV--------VVKDRDTGRSRGFGFVRFAEDAAADSAIAAMNNVEFDGRTIRVDKASDRGSG 84          
BLAST of mRNA_P-canaliculata_contig9735.23821.1 vs. uniprot
Match: A0A6A6P7C7_9PEZI (RRM domain-containing protein n=1 Tax=Lineolata rhizophorae TaxID=578093 RepID=A0A6A6P7C7_9PEZI)

HSP 1 Score: 132 bits (332), Expect = 5.510e-36
Identity = 66/96 (68.75%), Postives = 78/96 (81.25%), Query Frame = 1
Query:    1 GLAWHTDDDTLRHKFEEFGQVDEAVSHPLLPMVVVKDRETGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVDRASERAPGGGXXXGRGGYN 288
            GLAWHTDD TLR KFEEFG V+EAV        VVKDR+TGRSRGFGFVRF+ ++ A++AIA+MNNVEFDGR IRVD+AS+++ GGG   GRGGYN
Sbjct:    8 GLAWHTDDATLRAKFEEFGHVEEAV--------VVKDRDTGRSRGFGFVRFSQESEADAAIASMNNVEFDGRLIRVDKASDKSGGGGGFQGRGGYN 95          
BLAST of mRNA_P-canaliculata_contig9735.23821.1 vs. uniprot
Match: F9XC08_ZYMTI (RRM domain-containing protein n=5 Tax=Zymoseptoria TaxID=1047167 RepID=F9XC08_ZYMTI)

HSP 1 Score: 132 bits (332), Expect = 1.280e-35
Identity = 66/86 (76.74%), Postives = 72/86 (83.72%), Query Frame = 1
Query:    1 GLAWHTDDDTLRHKFEEFGQVDEAVSHPLLPMVVVKDRETGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVDRASERAPGG 258
            GLAWHTDD TLR KFEE+GQVDEA+        VVKDR+TGRSRGFGFVRFADDA A++AI AMNNVEFDGRTIRVD+ASER  GG
Sbjct:    8 GLAWHTDDQTLRAKFEEYGQVDEAI--------VVKDRDTGRSRGFGFVRFADDAGADAAITAMNNVEFDGRTIRVDKASERGAGG 85          
BLAST of mRNA_P-canaliculata_contig9735.23821.1 vs. uniprot
Match: A0A3M7BRA4_HORWE (RRM domain-containing protein (Fragment) n=1 Tax=Hortaea werneckii TaxID=91943 RepID=A0A3M7BRA4_HORWE)

HSP 1 Score: 130 bits (327), Expect = 1.530e-35
Identity = 67/91 (73.63%), Postives = 73/91 (80.22%), Query Frame = 1
Query:    1 GLAWHTDDDTLRHKFEEFGQVDEAVSHPLLPMVVVKDRETGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVDRASERAPGGGXXXG 273
            GLAWHTDD TLR KFEEFGQVDEA+        VVKDR+TGRSRGFGFVRFA+D+AAE+AIA MNNVEFDGR IRVD+ASER  GG    G
Sbjct:    8 GLAWHTDDQTLRLKFEEFGQVDEAI--------VVKDRDTGRSRGFGFVRFAEDSAAENAIAQMNNVEFDGRQIRVDKASERPAGGSGGFG 90          
BLAST of mRNA_P-canaliculata_contig9735.23821.1 vs. uniprot
Match: A0A6A6CAZ6_9PEZI (RRM domain-containing protein (Fragment) n=1 Tax=Zasmidium cellare ATCC 36951 TaxID=1080233 RepID=A0A6A6CAZ6_9PEZI)

HSP 1 Score: 129 bits (325), Expect = 1.580e-35
Identity = 65/85 (76.47%), Postives = 72/85 (84.71%), Query Frame = 1
Query:    1 GLAWHTDDDTLRHKFEEFGQVDEAVSHPLLPMVVVKDRETGRSRGFGFVRFADDAAAESAIAAMNNVEFDGRTIRVDRASERAPG 255
            GLAWHTDD TLR KFEEFG VDEA+        VVKDR+TGRSRGFGFVRF+++AAAESAI+AMNNVEFDGRTIRVD+ASER  G
Sbjct:   11 GLAWHTDDQTLRSKFEEFGAVDEAI--------VVKDRDTGRSRGFGFVRFSEEAAAESAISAMNNVEFDGRTIRVDKASERGSG 87          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9735.23821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G1LHT3_9PEZI5.050e-4180.81RNA-binding domain-containing protein n=1 Tax=Tera... [more]
A0A4U0TXT9_9PEZI5.420e-3878.16RRM domain-containing protein n=3 Tax=Eukaryota Ta... [more]
M2N8A3_BAUPA6.430e-3879.31RRM domain-containing protein n=1 Tax=Baudoinia pa... [more]
UPI000CE187144.230e-3777.91glycine-rich RNA-binding, abscisic acid-inducible ... [more]
A0A6A6PYZ6_9PEZI2.070e-3678.82RRM domain-containing protein n=1 Tax=Neohortaea a... [more]
M2YN31_PSEFD4.150e-3680.00RRM domain-containing protein n=2 Tax=Pseudocercos... [more]
A0A6A6P7C7_9PEZI5.510e-3668.75RRM domain-containing protein n=1 Tax=Lineolata rh... [more]
F9XC08_ZYMTI1.280e-3576.74RRM domain-containing protein n=5 Tax=Zymoseptoria... [more]
A0A3M7BRA4_HORWE1.530e-3573.63RRM domain-containing protein (Fragment) n=1 Tax=H... [more]
A0A6A6CAZ6_9PEZI1.580e-3576.47RRM domain-containing protein (Fragment) n=1 Tax=Z... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9735contigP-canaliculata_contig9735:6170..6980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score138.3
Seed ortholog evalue3.9e-30
Seed eggNOG ortholog430998.XP_007677841.1
EggNOG free text desc.RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
EggNOG OGs201V7@147541,3A0CS@33154,3MKIY@451867,3P3AV@4751,3QVTS@4890,KOG0118@1,KOG0118@2759
COG Functional cat.A
Best tax levelDothideomycetidae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size585
Cds size585
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9735.23821.1prot_P-canaliculata_contig9735.23821.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9735 6170..6980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817337.2610528-CDS-P-canaliculata_contig9735:6169..63571622817337.2610528-CDS-P-canaliculata_contig9735:6169..6357Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9735 6170..6357 -
1693495231.821387-CDS-P-canaliculata_contig9735:6169..63571693495231.821387-CDS-P-canaliculata_contig9735:6169..6357Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9735 6170..6357 -
1622817337.2756572-CDS-P-canaliculata_contig9735:6476..65961622817337.2756572-CDS-P-canaliculata_contig9735:6476..6596Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9735 6477..6596 -
1693495231.8342924-CDS-P-canaliculata_contig9735:6476..65961693495231.8342924-CDS-P-canaliculata_contig9735:6476..6596Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9735 6477..6596 -
1622817337.2885857-CDS-P-canaliculata_contig9735:6663..68441622817337.2885857-CDS-P-canaliculata_contig9735:6663..6844Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9735 6664..6844 -
1693495231.8446054-CDS-P-canaliculata_contig9735:6663..68441693495231.8446054-CDS-P-canaliculata_contig9735:6663..6844Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9735 6664..6844 -
1622817337.306077-CDS-P-canaliculata_contig9735:6884..69801622817337.306077-CDS-P-canaliculata_contig9735:6884..6980Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9735 6885..6980 -
1693495231.85618-CDS-P-canaliculata_contig9735:6884..69801693495231.85618-CDS-P-canaliculata_contig9735:6884..6980Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9735 6885..6980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9735.23821.1

>prot_P-canaliculata_contig9735.23821.1 ID=prot_P-canaliculata_contig9735.23821.1|Name=mRNA_P-canaliculata_contig9735.23821.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=195bp
GLAWHTDDDTLRHKFEEFGQVDEAVSHPLLPMVVVKDRETGRSRGFGFVR
FADDAAAESAIAAMNNVEFDGRTIRVDRASERAPGGGGGGGRGGYNGGGG
GYGHGGGGYSRGGGYGGGGNGGGYPQQGGGGYGYGGGGQDWSQSGPGYGA
AYGGQSGSNLSDPLTDISMFHIGGYQQQSNGGDGYGQQQQGGGW*
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mRNA from alignment at P-canaliculata_contig9735:6170..6980-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9735.23821.1 ID=mRNA_P-canaliculata_contig9735.23821.1|Name=mRNA_P-canaliculata_contig9735.23821.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=811bp|location=Sequence derived from alignment at P-canaliculata_contig9735:6170..6980- (Pelvetia canaliculata dioecious)
GGCCTCGCTTGGCACACGGATGACGATACCCTTCGTCACAAGTTTGAAGA GTTCGGTCAGGTCGATGAAGCCGTGAGCCATCCTCTCCTCCCCATGGTCA TGGCATCACCCCACTGACACACCTCGTCGCGTCCAGGTCGTCGTAAAAGA TCGCGAAACGGGACGCAGCCGCGGGTTTGGATTTGTGCGTTTCGCCGACG ATGCCGCTGCTGAGTCGGCCATCGCGGCCATGAACAACGTCGAGTTTGAC GGCCGCACCATTCGCGTCGACCGCGCTTCGGAACGCGCTCCCGGTGGAGG TGGAGGTGGTGGCCGCGGTCCGTTCTTCCACACGCGCACGCGCACACAGT CGTGGTTTTCGCAGCACTGACACACCCGTTGCAGGCGGCTACAACGGCGG AGGAGGTGGATATGGTCACGGTGGAGGAGGCTACTCGCGCGGTGGTGGCT ACGGTGGCGGTGGCAATGGAGGAGGATACCCCCAGCAGGGCGGTGGTGGC TACGGTAACTGACACTCCGCCTCTTATCTCCCTCTTCCCCTCTCTGCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCAGCACGGCCCACATGG ACGCGACACTCACCGGTCCCCAGGCTACGGCGGTGGGGGCCAGGACTGGT CTCAATCCGGACCGGGCTACGGCGCCGCATACGGAGGTCAGTCGGGATCG AACCTGTCAGATCCCTTGACTGACATTTCGATGTTTCATATAGGTGGCTA CCAACAACAGTCCAATGGCGGCGATGGCTACGGCCAGCAGCAGCAGGGCG GCGGCTGGTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig9735:6170..6980-

>mRNA_P-canaliculata_contig9735.23821.1 ID=mRNA_P-canaliculata_contig9735.23821.1|Name=mRNA_P-canaliculata_contig9735.23821.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1170bp|location=Sequence derived from alignment at P-canaliculata_contig9735:6170..6980- (Pelvetia canaliculata dioecious)
GGCCTCGCTTGGCACACGGATGACGATACCCTTCGTCACAAGTTTGAAGA
GTTCGGTCAGGTCGATGAAGCCGTGAGCCATCCTCTCCTCCCCATGGGCC
TCGCTTGGCACACGGATGACGATACCCTTCGTCACAAGTTTGAAGAGTTC
GGTCAGGTCGATGAAGCCGTGAGCCATCCTCTCCTCCCCATGGTCGTCGT
AAAAGATCGCGAAACGGGACGCAGCCGCGGGTTTGGATTTGTGCGTTTCG
CCGACGATGCCGCTGCTGAGTCGGCCATCGCGGCCATGAACAACGTCGAG
TTTGACGGCCGCACCATTCGCGTCGACCGCGCTTCGGAACGCGCTCCCGG
TGGAGGTGGAGGTGGTGGCCGCGGTCGTCGTAAAAGATCGCGAAACGGGA
CGCAGCCGCGGGTTTGGATTTGTGCGTTTCGCCGACGATGCCGCTGCTGA
GTCGGCCATCGCGGCCATGAACAACGTCGAGTTTGACGGCCGCACCATTC
GCGTCGACCGCGCTTCGGAACGCGCTCCCGGTGGAGGTGGAGGTGGTGGC
CGCGGCGGCTACAACGGCGGAGGAGGTGGATATGGTCACGGTGGAGGAGG
CTACTCGCGCGGTGGTGGCTACGGTGGCGGTGGCAATGGAGGAGGATACC
CCCAGCAGGGCGGTGGTGGCTACGGCGGCTACAACGGCGGAGGAGGTGGA
TATGGTCACGGTGGAGGAGGCTACTCGCGCGGTGGTGGCTACGGTGGCGG
TGGCAATGGAGGAGGATACCCCCAGCAGGGCGGTGGTGGCTACGGCTACG
GCGGTGGGGGCCAGGACTGGTCTCAATCCGGACCGGGCTACGGCGCCGCA
TACGGAGGTCAGTCGGGATCGAACCTGTCAGATCCCTTGACTGACATTTC
GATGTTTCATATAGGTGGCTACCAACAACAGTCCAATGGCGGCGATGGCT
ACGGCCAGCAGCAGCAGGGCGGCGGCTGGTAGGCTACGGCGGTGGGGGCC
AGGACTGGTCTCAATCCGGACCGGGCTACGGCGCCGCATACGGAGGTCAG
TCGGGATCGAACCTGTCAGATCCCTTGACTGACATTTCGATGTTTCATAT
AGGTGGCTACCAACAACAGTCCAATGGCGGCGATGGCTACGGCCAGCAGC
AGCAGGGCGGCGGCTGGTAG
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