mRNA_P-canaliculata_contig9735.23818.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9735.23818.1
Unique NamemRNA_P-canaliculata_contig9735.23818.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig9735.23818.1 vs. uniprot
Match: A0A4U0UU41_9PEZI (Uncharacterized protein n=2 Tax=Friedmanniomyces endolithicus TaxID=329885 RepID=A0A4U0UU41_9PEZI)

HSP 1 Score: 111 bits (277), Expect = 8.910e-30
Identity = 58/98 (59.18%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:   19 MLTAYLTAVRTTFSPFNRTSGKTARLFLSLLPPRAHATMAINVVVRGRAAAAEPATLAVTFKDGREMEMDLNTMGLEEVQREVNRHSYILKRRDELMG 312
            MLT YLT V T FSPFN  SGKT R FL+LLPP A +TMAI+V + G++ A +PATL + FKDG+EM++DL  M ++++Q EV+RHS IL+R+DEL G
Sbjct:    1 MLTKYLTGVTTAFSPFNARSGKTVRNFLALLPPNARSTMAIDVKMFGQSEALKPATLTLKFKDGKEMQLDLEKMKIKDIQVEVDRHSRILRRKDELSG 98
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BLAST of mRNA_P-canaliculata_contig9735.23818.1 vs. uniprot
Match: A0A2I0S594_9PEZI (54S ribosomal protein L44, mitochondrial n=3 Tax=Cercospora TaxID=29002 RepID=A0A2I0S594_9PEZI)

HSP 1 Score: 109 bits (272), Expect = 5.290e-29
Identity = 57/98 (58.16%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:   19 MLTAYLTAVRTTFSPFNRTSGKTARLFLSLLPPRAHATMAINVVVRGRAAAAEPATLAVTFKDGREMEMDLNTMGLEEVQREVNRHSYILKRRDELMG 312
            M+T YLTAV+T FSPFN  SGKTAR FL+ LPP A +TMAI+V +  +A A +PATLA++FKDG+EM +DL+ M ++E+Q EV+RHS +L+R ++L G
Sbjct:    1 MITKYLTAVKTAFSPFNPRSGKTARNFLAQLPPNARSTMAIDVKLLPKAMANKPATLALSFKDGKEMMLDLDKMKIKEIQSEVDRHSRVLRRAEDLSG 98
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BLAST of mRNA_P-canaliculata_contig9735.23818.1 vs. uniprot
Match: F9XCA8_ZYMTI (Uncharacterized protein n=4 Tax=Zymoseptoria tritici TaxID=1047171 RepID=F9XCA8_ZYMTI)

HSP 1 Score: 108 bits (269), Expect = 1.510e-28
Identity = 55/98 (56.12%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:   19 MLTAYLTAVRTTFSPFNRTSGKTARLFLSLLPPRAHATMAINVVVRGRAAAAEPATLAVTFKDGREMEMDLNTMGLEEVQREVNRHSYILKRRDELMG 312
            MLT YLT+V TTFSPFN  SGKTAR FL+LLPP A +TMAI++ +  +A AA PA+LA+ FKDG+EM++DL  + +++++ EV+RHS  L+R ++L G
Sbjct:    1 MLTKYLTSVTTTFSPFNPRSGKTARNFLALLPPNARSTMAISITMLPKAQAATPASLAIKFKDGKEMQLDLEKLRIKDIETEVDRHSRSLRRAEDLAG 98
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BLAST of mRNA_P-canaliculata_contig9735.23818.1 vs. uniprot
Match: A0A6G1LI16_9PEZI (Uncharacterized protein n=1 Tax=Teratosphaeria nubilosa TaxID=161662 RepID=A0A6G1LI16_9PEZI)

HSP 1 Score: 107 bits (267), Expect = 2.960e-28
Identity = 58/98 (59.18%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:   19 MLTAYLTAVRTTFSPFNRTSGKTARLFLSLLPPRAHATMAINVVVRGRAAAAEPATLAVTFKDGREMEMDLNTMGLEEVQREVNRHSYILKRRDELMG 312
            MLT Y+T+VRTTFSPFN  SGKTAR FL+ LPP A + MAI V + G+  A +PA L + FKDG+EM MDL  M L +VQ EV+RHS  L+R++EL G
Sbjct:    1 MLTKYITSVRTTFSPFNARSGKTARNFLACLPPNARSNMAIEVKMLGQQDAHKPADLVIAFKDGKEMRMDLEKMKLRDVQTEVDRHSRGLRRKEELAG 98
[Close]
BLAST of mRNA_P-canaliculata_contig9735.23818.1 vs. uniprot
Match: M2N838_BAUPA (Uncharacterized protein n=1 Tax=Baudoinia panamericana (strain UAMH 10762) TaxID=717646 RepID=M2N838_BAUPA)

HSP 1 Score: 106 bits (265), Expect = 5.960e-28
Identity = 57/98 (58.16%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:   19 MLTAYLTAVRTTFSPFNRTSGKTARLFLSLLPPRAHATMAINVVVRGRAAAAEPATLAVTFKDGREMEMDLNTMGLEEVQREVNRHSYILKRRDELMG 312
            MLT YLTAV T FSPFN  SGKTAR FL+LLPP A + MAI+V +  RA   +PA+L++ FKDG+EM++DL  + L+++Q EV+RHS +LKR++EL G
Sbjct:    1 MLTKYLTAVSTAFSPFNARSGKTARNFLALLPPNARSRMAIDVKMFARADVDKPASLSLKFKDGKEMKLDLEKLKLKDIQVEVDRHSRLLKRQEELAG 98
[Close]
BLAST of mRNA_P-canaliculata_contig9735.23818.1 vs. uniprot
Match: N1PMK2_DOTSN (Uncharacterized protein n=1 Tax=Dothistroma septosporum (strain NZE10 / CBS 128990) TaxID=675120 RepID=N1PMK2_DOTSN)

HSP 1 Score: 106 bits (265), Expect = 6.130e-28
Identity = 55/98 (56.12%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:   19 MLTAYLTAVRTTFSPFNRTSGKTARLFLSLLPPRAHATMAINVVVRGRAAAAEPATLAVTFKDGREMEMDLNTMGLEEVQREVNRHSYILKRRDELMG 312
            M+T YLT+V TTFSPFN  SGKTAR FL+LLPP A +TMA++V +  +  AA PA LA+ FKDG+E+++DL  M ++E+Q EV+RHS +L+R ++L G
Sbjct:    1 MITKYLTSVATTFSPFNARSGKTARNFLALLPPNARSTMAVDVKMLPKLQAAGPAILALKFKDGKELKLDLEKMKIKEIQEEVDRHSRVLRRVEDLSG 98
[Close]
BLAST of mRNA_P-canaliculata_contig9735.23818.1 vs. uniprot
Match: A0A139HYP3_9PEZI (Uncharacterized protein n=1 Tax=Pseudocercospora eumusae TaxID=321146 RepID=A0A139HYP3_9PEZI)

HSP 1 Score: 107 bits (268), Expect = 1.050e-27
Identity = 56/98 (57.14%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:   19 MLTAYLTAVRTTFSPFNRTSGKTARLFLSLLPPRAHATMAINVVVRGRAAAAEPATLAVTFKDGREMEMDLNTMGLEEVQREVNRHSYILKRRDELMG 312
            M+T YLT+V T+FSPFN  SGKTAR FL+LLPP A +TMAI+V +  +A A +P TL + FKDG+EM++DL+ M ++E+Q EV+RHS IL+R+++L G
Sbjct:   58 MITKYLTSVATSFSPFNPRSGKTARNFLALLPPNARSTMAIDVKILPQAQAHQPVTLDLKFKDGKEMKLDLDKMKIQEIQIEVDRHSRILRRQEDLAG 155
[Close]
BLAST of mRNA_P-canaliculata_contig9735.23818.1 vs. uniprot
Match: A0A6J3LV47_9PEZI (uncharacterized protein n=1 Tax=Dissoconium aciculare CBS 342.82 TaxID=1314786 RepID=A0A6J3LV47_9PEZI)

HSP 1 Score: 107 bits (267), Expect = 1.230e-27
Identity = 56/98 (57.14%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:   19 MLTAYLTAVRTTFSPFNRTSGKTARLFLSLLPPRAHATMAINVVVRGRAAAAEPATLAVTFKDGREMEMDLNTMGLEEVQREVNRHSYILKRRDELMG 312
            MLT Y+TAV+T+FSPFN  SGKT R FL+LLP  A +TMAI+V + G+A A  PATLA++FKDG+EM++DL  M ++++Q+EV+RH+  L+R +EL G
Sbjct:   50 MLTKYITAVKTSFSPFNPRSGKTVRSFLALLPSNARSTMAIDVKMFGKAQAEAPATLAISFKDGKEMKIDLEKMKIKDIQQEVDRHARGLRRVEELSG 147
[Close]
BLAST of mRNA_P-canaliculata_contig9735.23818.1 vs. uniprot
Match: A0A0F4G954_9PEZI (Uncharacterized protein n=1 Tax=Zymoseptoria brevis TaxID=1047168 RepID=A0A0F4G954_9PEZI)

HSP 1 Score: 106 bits (265), Expect = 3.820e-27
Identity = 54/98 (55.10%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:   19 MLTAYLTAVRTTFSPFNRTSGKTARLFLSLLPPRAHATMAINVVVRGRAAAAEPATLAVTFKDGREMEMDLNTMGLEEVQREVNRHSYILKRRDELMG 312
            MLT YLT+V T+FSPFN  SGKTAR FL+LLPP A +TMAI++ +  +A AA PA+LA+ FKDG+EM++DL  + +++++ EV+RHS  L+R ++L G
Sbjct:   66 MLTKYLTSVTTSFSPFNPRSGKTARNFLALLPPNARSTMAISITMLPKAQAATPASLAIKFKDGKEMQLDLEKLRIKDIETEVDRHSRSLRRAEDLAG 163
[Close]
BLAST of mRNA_P-canaliculata_contig9735.23818.1 vs. uniprot
Match: UPI001D20BB0A (uncharacterized protein n=1 Tax=Passalora fulva TaxID=5499 RepID=UPI001D20BB0A)

HSP 1 Score: 105 bits (262), Expect = 4.760e-27
Identity = 56/101 (55.45%), Postives = 75/101 (74.26%), Query Frame = 1 
Query:   10 TTTMLTAYLTAVRTTFSPFNRTSGKTARLFLSLLPPRAHATMAINVVVRGRAAAAEPATLAVTFKDGREMEMDLNTMGLEEVQREVNRHSYILKRRDELMG 312
            T TM+T YLT V TTFSPFN  SGKTAR FL+LLPP A +TMAI+V +  +A AA P  L + FKDG+EM +DL  + ++++Q EV+RHS +L+R ++L G
Sbjct:   33 TATMITKYLTGVTTTFSPFNARSGKTARNFLALLPPNARSTMAIDVKMLPKAQAATPVFLGLKFKDGKEMNLDLEKLKIKDIQEEVDRHSRMLRRIEDLSG 133
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9735.23818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4U0UU41_9PEZI8.910e-3059.18Uncharacterized protein n=2 Tax=Friedmanniomyces e... [more]
A0A2I0S594_9PEZI5.290e-2958.1654S ribosomal protein L44, mitochondrial n=3 Tax=C... [more]
F9XCA8_ZYMTI1.510e-2856.12Uncharacterized protein n=4 Tax=Zymoseptoria triti... [more]
A0A6G1LI16_9PEZI2.960e-2859.18Uncharacterized protein n=1 Tax=Teratosphaeria nub... [more]
M2N838_BAUPA5.960e-2858.16Uncharacterized protein n=1 Tax=Baudoinia panameri... [more]
N1PMK2_DOTSN6.130e-2856.12Uncharacterized protein n=1 Tax=Dothistroma septos... [more]
A0A139HYP3_9PEZI1.050e-2757.14Uncharacterized protein n=1 Tax=Pseudocercospora e... [more]
A0A6J3LV47_9PEZI1.230e-2757.14uncharacterized protein n=1 Tax=Dissoconium acicul... [more]
A0A0F4G954_9PEZI3.820e-2755.10Uncharacterized protein n=1 Tax=Zymoseptoria brevi... [more]
UPI001D20BB0A4.760e-2755.45uncharacterized protein n=1 Tax=Passalora fulva Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9735contigP-canaliculata_contig9735:138..606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score111.7
Seed ortholog evalue2e-22
Seed eggNOG ortholog1047171.Mycgr3P104513
Preferred nameMRPL44
KEGG koko:K17434
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.39S ribosomal protein L53/MRP-L53
EggNOG OGs202MN@147541,2CQGP@1,2S452@2759,3A64P@33154,3MM9P@451867,3P60G@4751,3QXD6@4890
COG Functional cat.A
Best tax levelDothideomycetidae
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko03011
Hectar predicted targeting categorymitochondrion
Exons2
Model size315
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9735.23818.1prot_P-canaliculata_contig9735.23818.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9735 138..588 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817337.129225-CDS-P-canaliculata_contig9735:137..2501622817337.129225-CDS-P-canaliculata_contig9735:137..250Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9735 138..250 -
1693495231.749762-CDS-P-canaliculata_contig9735:137..2501693495231.749762-CDS-P-canaliculata_contig9735:137..250Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9735 138..250 -
1622817337.1463683-CDS-P-canaliculata_contig9735:404..5881622817337.1463683-CDS-P-canaliculata_contig9735:404..588Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9735 405..588 -
1693495231.7630367-CDS-P-canaliculata_contig9735:404..5881693495231.7630367-CDS-P-canaliculata_contig9735:404..588Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9735 405..588 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817337.1580057-UTR-P-canaliculata_contig9735:588..6061622817337.1580057-UTR-P-canaliculata_contig9735:588..606Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9735 589..606 -
1693495231.7744644-UTR-P-canaliculata_contig9735:588..6061693495231.7744644-UTR-P-canaliculata_contig9735:588..606Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9735 589..606 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9735.23818.1

>prot_P-canaliculata_contig9735.23818.1 ID=prot_P-canaliculata_contig9735.23818.1|Name=mRNA_P-canaliculata_contig9735.23818.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=99bp
MLTAYLTAVRTTFSPFNRTSGKTARLFLSLLPPRAHATMAINVVVRGRAA
AAEPATLAVTFKDGREMEMDLNTMGLEEVQREVNRHSYILKRRDELMG*
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mRNA from alignment at P-canaliculata_contig9735:138..606-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9735.23818.1 ID=mRNA_P-canaliculata_contig9735.23818.1|Name=mRNA_P-canaliculata_contig9735.23818.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=469bp|location=Sequence derived from alignment at P-canaliculata_contig9735:138..606- (Pelvetia canaliculata dioecious)
CCCAACGAAACCACCACAATGCTCACCGCCTACCTCACCGCCGTGCGCAC
GACCTTCTCCCCCTTCAACCGCACCTCGGGCAAAACGGCGCGCCTCTTCC
TCTCGCTGCTCCCGCCGCGCGCGCACGCCACCATGGCCATCAACGTCGTG
GTGCGCGGGCGCGCGGCCGCGGCTGAGCCGGCGACGCTGGCGGTGACGTT
TAGTGAGTTGCTTGGTCGTTTCGTTTCGGGTTCCCCCTTGGCGATATGAG
CGGATTGCGTTGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGCGGAGAC
GGCGAGGAGAGGAGGGTGGGATCGATCAGGCTTGTTGCTGACTTGGGACT
TGCTAGAGGATGGGCGCGAGATGGAGATGGATCTGAATACCATGGGGTTG
GAGGAGGTGCAGCGCGAGGTGAATCGGCATTCGTATATACTGAAGCGGCG
GGATGAGTTGATGGGTTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig9735:138..606-

>mRNA_P-canaliculata_contig9735.23818.1 ID=mRNA_P-canaliculata_contig9735.23818.1|Name=mRNA_P-canaliculata_contig9735.23818.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at P-canaliculata_contig9735:138..606- (Pelvetia canaliculata dioecious)
ATGCTCACCGCCTACCTCACCGCCGTGCGCACGACCTTCTCCCCCTTCAA
CCGCACCTCGGGCAAAACGGCGCGCCTCTTCCTCTCGCTGCTCCCGCCGC
GCGCGCACGCCACCATGGCCATCAACGTCGTGGTGCGCGGGCGCGCGGCC
GCGGCTGAGCCGGCGACGCTGGCGGTGACGTTTAATGCTCACCGCCTACC
TCACCGCCGTGCGCACGACCTTCTCCCCCTTCAACCGCACCTCGGGCAAA
ACGGCGCGCCTCTTCCTCTCGCTGCTCCCGCCGCGCGCGCACGCCACCAT
GGCCATCAACGTCGTGGTGCGCGGGCGCGCGGCCGCGGCTGAGCCGGCGA
CGCTGGCGGTGACGTTTAAGGATGGGCGCGAGATGGAGATGGATCTGAAT
ACCATGGGGTTGGAGGAGGTGCAGCGCGAGGTGAATCGGCATTCGTATAT
ACTGAAGCGGCGGGATGAGTTGATGGGTTAAAGGATGGGCGCGAGATGGA
GATGGATCTGAATACCATGGGGTTGGAGGAGGTGCAGCGCGAGGTGAATC
GGCATTCGTATATACTGAAGCGGCGGGATGAGTTGATGGGTTAA
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