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Homology
BLAST of mRNA_P-canaliculata_contig97337.23817.1 vs. uniprot
Match: A0A518ERC4_9BACT (Electron transport protein YccM n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518ERC4_9BACT) HSP 1 Score: 223 bits (567), Expect = 2.910e-63 Identity = 139/353 (39.38%), Postives = 199/353 (56.37%), Query Frame = 1 Query: 1 FAYRGYRQEKDFLLSMGLAACFGILVVLVVRLVRRNDVRLPGLRLKAAGRVAPLGVALALGTLGVAAAGVPYGIVPAFGMWKASSAWLGLKGVIQEFRETGQRPALTDAQVAQAEAMLEHSMDVQRRSSIFNLENFERIAWGAALLNRPEDLAESTTEAVEGSKASVGQKVGAVDYMWRLGQVEGASAFLRRVYELHPESVSAINGLVAILVQKNELAEAESLVKAGLELHPDDAELLIRRSMFAGERREFSAAAGDLLRVLEMDRANFIARDQLWRLWSTTGKLEEAAKVLREGLALRKAPQQWRTELAWVLLTAGKPQEAIEEARVISRPEEEDLEVLRVAGRIFEAAGAT 1059
FA RGY QE+ FLLS+G+AACF LV+L+VR+VRR+DV++PG+ LK AG+ P+GV + L TLG+AA VPYGIVP +AS+AW L + E G R L+ + A AEA+L+++ V+ RS + ++EN E + WG L E EA+ A VG + + G++ GA A R E P + A NGL+ +LVQ++ + EA + A LE+ P+ +L++R G + DL L +D AR+ L+RL + A VLREG+AL +P + R LA VLL +G+ AI+EA ++R E D +L VA + AGAT
Sbjct: 307 FAVRGYYQERGFLLSVGIAACFAYLVILLVRMVRRSDVQVPGIVLKKAGKARPMGVLVGLATLGIAACAVPYGIVPEVSHRRASAAWSVLADARARWFEPG-RAELSSEEGAAAEALLDNARTVRERSGVRSMENTEHLIWGELLTGDEEAFDGYLREALGFPGAGVGLLMLRAAQYGKTGELNGAEAAYRSALEAEPGYLPATNGLMGLLVQQDRIEEARKVADAALEVEPEAVHVLVQRGFIRGSTSDVEGGVADLREALRLDPGLVDARNLLFRLLMQSQNAGAAEAVLREGIALENSPVELRAHLAQVLLVSGQRDAAIQEAVDLARLAEGDPALLGVARAVLSQAGAT 658
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Bacteria |
| Seed ortholog score | 61.2 |
| Seed ortholog evalue | 1.1e-06 |
| Seed eggNOG ortholog | 314287.GB2207_06803 |
| EggNOG free text desc. | COG0457 FOG TPR repeat |
| EggNOG OGs | 1J5FN@118884,1MYB8@1224,1RQIX@1236,COG0457@1,COG0457@2 |
| COG Functional cat. | O |
| Best tax level | unclassified Gammaproteobacteria |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | signal anchor |
| Exons | 1 |
| Model size | 1083 |
| Cds size | 1083 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817337.0402687-CDS-P-canaliculata_contig97337:0..1083 | 1622817337.0402687-CDS-P-canaliculata_contig97337:0..1083 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig97337 1..1083 + |
| 1693495231.6860657-CDS-P-canaliculata_contig97337:0..1083 | 1693495231.6860657-CDS-P-canaliculata_contig97337:0..1083 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig97337 1..1083 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig97337.23817.1 >prot_P-canaliculata_contig97337.23817.1 ID=prot_P-canaliculata_contig97337.23817.1|Name=mRNA_P-canaliculata_contig97337.23817.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=361bp
FAYRGYRQEKDFLLSMGLAACFGILVVLVVRLVRRNDVRLPGLRLKAAGR
VAPLGVALALGTLGVAAAGVPYGIVPAFGMWKASSAWLGLKGVIQEFRET
GQRPALTDAQVAQAEAMLEHSMDVQRRSSIFNLENFERIAWGAALLNRPE
DLAESTTEAVEGSKASVGQKVGAVDYMWRLGQVEGASAFLRRVYELHPES
VSAINGLVAILVQKNELAEAESLVKAGLELHPDDAELLIRRSMFAGERRE
FSAAAGDLLRVLEMDRANFIARDQLWRLWSTTGKLEEAAKVLREGLALRK
APQQWRTELAWVLLTAGKPQEAIEEARVISRPEEEDLEVLRVAGRIFEAA
GATEDAEKVRR back to topmRNA from alignment at P-canaliculata_contig97337:1..1083+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig97337.23817.1 ID=mRNA_P-canaliculata_contig97337.23817.1|Name=mRNA_P-canaliculata_contig97337.23817.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1083bp|location=Sequence derived from alignment at P-canaliculata_contig97337:1..1083+ (Pelvetia canaliculata dioecious)
TTTGCGTACCGGGGCTACCGCCAGGAGAAGGACTTTCTTCTCTCCATGGG
GCTCGCGGCATGCTTCGGGATTCTCGTGGTGCTGGTGGTTCGGCTAGTGC
GCCGAAATGACGTGCGCCTGCCGGGACTGAGGCTGAAGGCGGCGGGGCGC
GTGGCGCCTTTGGGGGTGGCGCTGGCGCTCGGTACTTTGGGGGTAGCGGC
GGCTGGGGTTCCGTATGGGATCGTGCCGGCATTCGGCATGTGGAAGGCGA
GCAGCGCTTGGTTGGGTCTGAAGGGGGTGATTCAGGAGTTTCGGGAGACG
GGGCAGCGTCCGGCGCTGACCGATGCGCAGGTCGCGCAGGCCGAGGCGAT
GCTGGAGCACTCCATGGACGTGCAGCGGCGAAGCTCTATCTTCAACCTGG
AAAACTTCGAGCGCATCGCTTGGGGCGCTGCGCTCTTGAATCGGCCGGAG
GACTTGGCGGAGTCCACGACTGAGGCCGTGGAGGGTAGCAAGGCGAGCGT
TGGTCAGAAGGTGGGCGCCGTCGACTACATGTGGAGGCTCGGGCAGGTGG
AGGGTGCGTCTGCCTTCCTGCGGAGGGTTTACGAGCTACATCCAGAGTCG
GTGTCGGCTATCAACGGCCTCGTTGCGATCTTGGTGCAAAAGAATGAGCT
CGCGGAGGCCGAGAGCCTTGTGAAGGCGGGGCTTGAGCTTCATCCAGACG
ATGCTGAGTTGCTGATCAGGCGCTCGATGTTCGCCGGTGAGAGGCGCGAA
TTTTCTGCGGCCGCCGGTGACTTGCTCCGGGTGCTTGAAATGGACCGCGC
GAATTTCATCGCGCGGGATCAGCTTTGGAGGCTCTGGAGTACGACGGGAA
AGCTGGAGGAGGCCGCGAAGGTTTTGCGGGAGGGTCTCGCTCTTCGGAAG
GCGCCCCAGCAGTGGCGTACGGAACTGGCGTGGGTGCTCTTGACGGCCGG
GAAGCCCCAGGAGGCCATCGAGGAAGCTCGAGTGATTTCCAGGCCAGAGG
AAGAGGATCTCGAGGTCTTGAGAGTCGCCGGGCGCATCTTCGAAGCCGCA
GGAGCCACCGAGGACGCGGAGAAAGTGCGAAGA back to topCoding sequence (CDS) from alignment at P-canaliculata_contig97337:1..1083+ >mRNA_P-canaliculata_contig97337.23817.1 ID=mRNA_P-canaliculata_contig97337.23817.1|Name=mRNA_P-canaliculata_contig97337.23817.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2166bp|location=Sequence derived from alignment at P-canaliculata_contig97337:1..1083+ (Pelvetia canaliculata dioecious)
TTTGCGTACCGGGGCTACCGCCAGGAGAAGGACTTTCTTCTCTCCATGGG
GCTCGCGGCATGCTTCGGGATTCTCGTGGTGCTGGTGGTTCGGCTAGTGC
GCCGAAATGACGTGCGCCTGCCGGGACTGAGGCTGAAGGCGGCGGGGCGC
GTGGCGCCTTTGGGGGTGGCGCTGGCGCTCGGTACTTTGGGGGTAGCGGC
GGCTGGGGTTCCGTATGGGATCGTGCCGGCATTCGGCATGTGGAAGGCGA
GCAGCGCTTGGTTGGGTCTGAAGGGGGTGATTCAGGAGTTTCGGGAGACG
GGGCAGCGTCCGGCGCTGACCGATGCGCAGGTCGCGCAGGCCGAGGCGAT
GCTGGAGCACTCCATGGACGTGCAGCGGCGAAGCTCTATCTTCAACCTGG
AAAACTTCGAGCGCATCGCTTGGGGCGCTGCGCTCTTGAATCGGCCGGAG
GACTTGGCGGAGTCCACGACTGAGGCCGTGGAGGGTAGCAAGGCGAGCGT
TGGTCAGAAGGTGGGCGCCGTCGACTACATGTGGAGGCTCGGGCAGGTGG
AGGGTGCGTCTGCCTTCCTGCGGAGGGTTTACGAGCTACATCCAGAGTCG
GTGTCGGCTATCAACGGCCTCGTTGCGATCTTGGTGCAAAAGAATGAGCT
CGCGGAGGCCGAGAGCCTTGTGAAGGCGGGGCTTGAGCTTCATCCAGACG
ATGCTGAGTTGCTGATCAGGCGCTCGATGTTCGCCGGTGAGAGGCGCGAA
TTTTCTGCGGCCGCCGGTGACTTGCTCCGGGTGCTTGAAATGGACCGCGC
GAATTTCATCGCGCGGGATCAGCTTTGGAGGCTCTGGAGTACGACGGGAA
AGCTGGAGGAGGCCGCGAAGGTTTTGCGGGAGGGTCTCGCTCTTCGGAAG
GCGCCCCAGCAGTGGCGTACGGAACTGGCGTGGGTGCTCTTGACGGCCGG
GAAGCCCCAGGAGGCCATCGAGGAAGCTCGAGTGATTTCCAGGCCAGAGG
AAGAGGATCTCGAGGTCTTGAGAGTCGCCGGGCGCATCTTCGAAGCCGCA
GGAGCCACCGAGGACGCGGAGAAAGTGCGAAGATTTGCGTACCGGGGCTA
CCGCCAGGAGAAGGACTTTCTTCTCTCCATGGGGCTCGCGGCATGCTTCG
GGATTCTCGTGGTGCTGGTGGTTCGGCTAGTGCGCCGAAATGACGTGCGC
CTGCCGGGACTGAGGCTGAAGGCGGCGGGGCGCGTGGCGCCTTTGGGGGT
GGCGCTGGCGCTCGGTACTTTGGGGGTAGCGGCGGCTGGGGTTCCGTATG
GGATCGTGCCGGCATTCGGCATGTGGAAGGCGAGCAGCGCTTGGTTGGGT
CTGAAGGGGGTGATTCAGGAGTTTCGGGAGACGGGGCAGCGTCCGGCGCT
GACCGATGCGCAGGTCGCGCAGGCCGAGGCGATGCTGGAGCACTCCATGG
ACGTGCAGCGGCGAAGCTCTATCTTCAACCTGGAAAACTTCGAGCGCATC
GCTTGGGGCGCTGCGCTCTTGAATCGGCCGGAGGACTTGGCGGAGTCCAC
GACTGAGGCCGTGGAGGGTAGCAAGGCGAGCGTTGGTCAGAAGGTGGGCG
CCGTCGACTACATGTGGAGGCTCGGGCAGGTGGAGGGTGCGTCTGCCTTC
CTGCGGAGGGTTTACGAGCTACATCCAGAGTCGGTGTCGGCTATCAACGG
CCTCGTTGCGATCTTGGTGCAAAAGAATGAGCTCGCGGAGGCCGAGAGCC
TTGTGAAGGCGGGGCTTGAGCTTCATCCAGACGATGCTGAGTTGCTGATC
AGGCGCTCGATGTTCGCCGGTGAGAGGCGCGAATTTTCTGCGGCCGCCGG
TGACTTGCTCCGGGTGCTTGAAATGGACCGCGCGAATTTCATCGCGCGGG
ATCAGCTTTGGAGGCTCTGGAGTACGACGGGAAAGCTGGAGGAGGCCGCG
AAGGTTTTGCGGGAGGGTCTCGCTCTTCGGAAGGCGCCCCAGCAGTGGCG
TACGGAACTGGCGTGGGTGCTCTTGACGGCCGGGAAGCCCCAGGAGGCCA
TCGAGGAAGCTCGAGTGATTTCCAGGCCAGAGGAAGAGGATCTCGAGGTC
TTGAGAGTCGCCGGGCGCATCTTCGAAGCCGCAGGAGCCACCGAGGACGC
GGAGAAAGTGCGAAGA back to top
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