mRNA_P-canaliculata_contig973.23813.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig973.23813.1 vs. uniprot
Match: D7FKL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL9_ECTSI) HSP 1 Score: 154 bits (389), Expect = 9.190e-38 Identity = 74/168 (44.05%), Postives = 100/168 (59.52%), Query Frame = 2 Query: 200 VECADACGGIGAG-FPAGASTVCDTTCSEGG-----RFGGYLCGAGDTVKFGPMCRLCFNDIKEARNAESRLMDGK--------HVIMCDTMRPPAAVDCSDECARETNTVCDEACGTGLHGDYGCNWKNLGAKCRSCFEDVEAVLKADEIAKRHGGRAIMCDTHEAP 661
++C ACG +G G ST CD +C+ G R GG+ CGAGD +FG CRLC+ D + A A+ +L HV+MCDT +PP A C+ C ++TVCD CG+G +GD+ C+W+ LG+ CR CF ++ A ADE AK HGGR +MC+THE P
Sbjct: 178 LDCTSACGSALSGKIGTGVSTFCDESCATGWSPAGPRLGGHDCGAGDPSQFGGTCRLCYTDEELALVADHKLASASANPSKPDMHVVMCDTTQPPPASSCTTACQDASDTVCDYRCGSGRYGDFNCDWRGLGSTCRLCFNELPAAHLADEFAKAHGGRVVMCNTHEPP 345
BLAST of mRNA_P-canaliculata_contig973.23813.1 vs. uniprot
Match: D7FRS3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRS3_ECTSI) HSP 1 Score: 152 bits (385), Expect = 3.080e-37 Identity = 80/185 (43.24%), Postives = 103/185 (55.68%), Query Frame = 2 Query: 200 VECADACGGI-GAGFPAGASTVCDTTCSEGG-----RFGGYLCGAGDTVKFGPMCRLCFNDIKEARNAESRLMD--------GKHVIMCDTMRPPAAVDCSDECARETNTVCDEACGTGLHGDYGCNWKNLGAKCRSCFEDVEAVLKADEIAKRHGGRAIMCDTHEAP-EVAMKG-ALVASTTHR 706
+ C ACG A GAST CD +CS G R GG+ CGAGD ++G CRLC+ + EA A+ L HV+MCDT +PP A C+ C +TVCD CG+G +GD+ CNW+ + + CR CF + L ADE+AK HGGR +MC+THE P + K A V T HR
Sbjct: 92 LSCTGACGSEHSAQVRTGASTFCDESCSTGWSPAGPRLGGHNCGAGDPSQYGSTCRLCYTNEDEALAADRTLASLSTDPSTPDAHVVMCDTTQPPQASRCTTACQDMADTVCDYRCGSGRYGDFNCNWRGVDSTCRLCFHETSVALLADEVAKAHGGRVVMCNTHEPPLPIGSKTKATVEDTGHR 276
BLAST of mRNA_P-canaliculata_contig973.23813.1 vs. uniprot
Match: A0A6H5KI77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI77_9PHAE) HSP 1 Score: 135 bits (339), Expect = 4.020e-31 Identity = 64/132 (48.48%), Postives = 76/132 (57.58%), Query Frame = 2 Query: 290 RFGGYLCGAGDTVKFGPMCRLCFNDIKEARNAESRL--------MDGKHVIMCDTMRPPAAVDCSDECARETNTVCDEACGTGLHGDYGCNWKNLGAKCRSCFEDVEAVLKADEIAKRHGGRAIMCDTHEAP 661
RF G+ CGAGD +G CR C+ D +EA A+ L + G HVIMCDT PP A CS C +TVCD CGTGL+GDY C+W LG CR CF++ AD IAK G R I+C THE P
Sbjct: 125 RFRGHNCGAGDPSLYGSTCRSCYTDEEEALAADRSLGNASSDPLLAGAHVIMCDTGEPPQASSCSPACRSMADTVCDSRCGTGLYGDYNCDWLGLGLTCRRCFQETSVAEFADSIAKTRGQRVILCATHEPP 256
BLAST of mRNA_P-canaliculata_contig973.23813.1 vs. uniprot
Match: A0A6H5JKY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY0_9PHAE) HSP 1 Score: 127 bits (319), Expect = 1.590e-28 Identity = 76/206 (36.89%), Postives = 101/206 (49.03%), Query Frame = 2 Query: 254 STVCD-TTCSEG------GRFGGYLCGAGDTVKFGPMCRLCFNDIKEARNAESRLMDG---------KHVIMCDTMRPPAAVDCSDECARETNT------------------------VCDEACGTGLHGDYGCNWKNLGA--------------KCRSCFEDVEAVLKADEIAKRHGGRAIMCDTHEAPEVAMKGALVASTTHRL 709
+TVCD TCS G+ G + CGAGD +FG CR C+ D +EA A+ L + +HVIMCDT+RPP A CS +CA + +T +CD+ C +GL G+Y CNW++ GA CR CF+D A + ADE AKR GGR IMC+THE P + + A R+
Sbjct: 290 ATVCDHATCSAATAGSADGKPGAWSCGAGDEERFGKHCRSCYFDAEEALKADRILQNQAREVGEVQPRHVIMCDTLRPPEASTCSLKCALKKDTARTNSSMRPPEPHVNPVWLYVPPQICDDRCESGLFGNYNCNWRDHGALLWTQMILFTPAPEHCRFCFDDTAAAIVADETAKRMGGRVIMCNTHEPPVERTQAEMDALEKKRI 495
BLAST of mRNA_P-canaliculata_contig973.23813.1 vs. uniprot
Match: A0A6H5KID1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KID1_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 3.390e-13 Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 2 Query: 488 VCDEACGTGLHGDYGCNWKNLGAKCRSCFEDVEAVLKADEIAKRHGGRAIMCDTHEAP 661
VCD CG+G +GD+ C+W+ LG+ CR CF ++ A ADE AK H GR +MC+THE P
Sbjct: 25 VCDYRCGSGRYGDFNCDWRGLGSTCRLCFNELPAAHLADEFAKAHDGRVVMCNTHEPP 82
BLAST of mRNA_P-canaliculata_contig973.23813.1 vs. uniprot
Match: A0A6H5JMG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMG7_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 2.290e-9 Identity = 31/52 (59.62%), Postives = 42/52 (80.77%), Query Frame = 2 Query: 23 LYPTGPSEQFYEMVSDEDDQGQLSEYDALAIMQWNVVVATDQFFEDLYKAAF 178
+YP GPS F++M DE + +LSEYDALAI++W+V+VATD+ FE+LY AAF
Sbjct: 137 MYPKGPSVMFFKMFLDEGVRAELSEYDALAIIEWDVLVATDRSFEELYHAAF 188
BLAST of mRNA_P-canaliculata_contig973.23813.1 vs. uniprot
Match: A0A6H5LJP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJP6_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 7.200e-9 Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 2 Query: 23 LYPTGPSEQFYEMVSDEDDQGQLSEYDALAIMQWNVVVATDQFFEDLYKAAF 178
+YP GPS FY M DED + LSEYDAL+I++W+V+VA+D FE+LY AAF
Sbjct: 108 IYPQGPSVMFYNMFLDEDVRSSLSEYDALSIIEWDVLVASDNSFEELYHAAF 159
BLAST of mRNA_P-canaliculata_contig973.23813.1 vs. uniprot
Match: D7FR80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR80_ECTSI) HSP 1 Score: 67.8 bits (164), Expect = 1.250e-8 Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 2 Query: 23 LYPTGPSEQFYEMVSDEDDQGQLSEYDALAIMQWNVVVATDQFFEDLYKAAF 178
+YP GPS F++M DE +LSEYDALAI++W+V+VATD+ FE+LY AAF
Sbjct: 53 VYPKGPSVMFFKMFLDEGVHAELSEYDALAIIEWDVLVATDRSFEELYHAAF 104
BLAST of mRNA_P-canaliculata_contig973.23813.1 vs. uniprot
Match: A0A6H5JSN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN3_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 1.730e-8 Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 2 Query: 23 LYPTGPSEQFYEMVSDEDDQGQLSEYDALAIMQWNVVVATDQFFEDLYKAAF 178
+YP GPS FY+M DE + SEYDALAI++W+V+VATD+ FE+LY AAF
Sbjct: 121 VYPRGPSVMFYKMFLDERIRSNFSEYDALAILEWDVLVATDRSFEELYHAAF 172
BLAST of mRNA_P-canaliculata_contig973.23813.1 vs. uniprot
Match: D7FI63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI63_ECTSI) HSP 1 Score: 67.0 bits (162), Expect = 2.400e-8 Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 2 Query: 23 LYPTGPSEQFYEMVSDEDDQGQLSEYDALAIMQWNVVVATDQFFEDLYKAAF 178
+YP GPS FY+M DE+ + LSEYDAL+I++W+V+VA+D FE+LY AAF
Sbjct: 109 IYPKGPSVMFYKMFLDENVRSSLSEYDALSIVEWDVLVASDNSFEELYHAAF 160 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig973.23813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig973.23813.1 >prot_P-canaliculata_contig973.23813.1 ID=prot_P-canaliculata_contig973.23813.1|Name=mRNA_P-canaliculata_contig973.23813.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=242bp MVSDEDDQGQLSEYDALAIMQWNVVVATDQFFEDLYKAAFHPTGEKEVECback to top mRNA from alignment at P-canaliculata_contig973:16930..19679- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig973.23813.1 ID=mRNA_P-canaliculata_contig973.23813.1|Name=mRNA_P-canaliculata_contig973.23813.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2750bp|location=Sequence derived from alignment at P-canaliculata_contig973:16930..19679- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig973:16930..19679- >mRNA_P-canaliculata_contig973.23813.1 ID=mRNA_P-canaliculata_contig973.23813.1|Name=mRNA_P-canaliculata_contig973.23813.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1452bp|location=Sequence derived from alignment at P-canaliculata_contig973:16930..19679- (Pelvetia canaliculata dioecious)back to top |