mRNA_P-canaliculata_contig97225.23808.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97225.23808.1
Unique NamemRNA_P-canaliculata_contig97225.23808.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97225.23808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97225contigP-canaliculata_contig97225:1..675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score72.0
Seed ortholog evalue3.9e-10
Seed eggNOG ortholog483219.LILAB_18790
KEGG koko:K14475,ko:K20276
KEGG Pathwayko02024,ko05143,map02024,map05143
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG4932@1,COG4932@2,COG5184@1,COG5184@2
COG Functional cat.DZ
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons1
Model size675
Cds size672
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817336.4376779-UTR-P-canaliculata_contig97225:0..31622817336.4376779-UTR-P-canaliculata_contig97225:0..3Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97225 1..3 +
1693495231.2075481-UTR-P-canaliculata_contig97225:0..31693495231.2075481-UTR-P-canaliculata_contig97225:0..3Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97225 1..3 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817336.448574-CDS-P-canaliculata_contig97225:3..6751622817336.448574-CDS-P-canaliculata_contig97225:3..675Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97225 4..675 +
1693495231.220164-CDS-P-canaliculata_contig97225:3..6751693495231.220164-CDS-P-canaliculata_contig97225:3..675Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97225 4..675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97225.23808.1prot_P-canaliculata_contig97225.23808.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97225 4..675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97225.23808.1

>prot_P-canaliculata_contig97225.23808.1 ID=prot_P-canaliculata_contig97225.23808.1|Name=mRNA_P-canaliculata_contig97225.23808.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=224bp
MVGQVQTVEGQPAVGATVTIPGTPFGAITDGTGSFALRSVPNGAWTLAAR
PANPLDDFPGARRLVAVNSDEITDVGVIKLFEPSFVSGTVLVEGSADGAL
VGIFEEGSLTTAFENGTYLLSKVPPGTHEMVAVLNGASVTLPNVEVAPNE
VKRFVDFNFANSETLPARIEGTARFVLGTSEGISVALLDAKTGEIVGEQD
VDEDGAFAFEDVALGAYVVRAKKD
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mRNA from alignment at P-canaliculata_contig97225:1..675+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97225.23808.1 ID=mRNA_P-canaliculata_contig97225.23808.1|Name=mRNA_P-canaliculata_contig97225.23808.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=675bp|location=Sequence derived from alignment at P-canaliculata_contig97225:1..675+ (Pelvetia canaliculata dioecious)
GGCATGGTAGGGCAAGTTCAGACCGTCGAAGGTCAGCCTGCTGTGGGGGC
TACAGTTACCATTCCAGGAACGCCGTTTGGTGCTATAACTGATGGGACGG
GGTCATTCGCTCTTCGTTCTGTGCCTAACGGAGCCTGGACTTTGGCCGCA
CGGCCCGCTAACCCTCTCGATGACTTTCCCGGTGCTCGTAGACTTGTCGC
TGTAAATAGTGACGAAATCACAGATGTAGGAGTCATCAAGCTGTTTGAGC
CAAGCTTTGTCTCGGGTACGGTTCTTGTGGAGGGCAGTGCTGATGGAGCT
CTGGTCGGAATCTTTGAGGAGGGAAGCCTCACTACAGCTTTCGAGAATGG
GACCTACTTGCTCAGTAAGGTTCCGCCCGGAACTCATGAGATGGTTGCCG
TTCTCAACGGGGCTTCGGTTACGCTCCCAAACGTTGAAGTAGCGCCAAAC
GAGGTAAAACGCTTCGTCGACTTTAATTTTGCCAACTCAGAAACCCTGCC
TGCCCGTATCGAAGGTACAGCACGGTTCGTTCTGGGGACAAGTGAGGGCA
TTTCGGTCGCGCTTCTTGATGCCAAAACCGGAGAGATTGTGGGTGAGCAA
GATGTAGACGAAGACGGAGCATTTGCCTTCGAGGATGTCGCTCTGGGCGC
ATATGTTGTGCGTGCAAAAAAGGAT
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Coding sequence (CDS) from alignment at P-canaliculata_contig97225:1..675+

>mRNA_P-canaliculata_contig97225.23808.1 ID=mRNA_P-canaliculata_contig97225.23808.1|Name=mRNA_P-canaliculata_contig97225.23808.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1344bp|location=Sequence derived from alignment at P-canaliculata_contig97225:1..675+ (Pelvetia canaliculata dioecious)
ATGGTAGGGCAAGTTCAGACCGTCGAAGGTCAGCCTGCTGTGGGGGCTAC
AGTTACCATTCCAGGAACGCCGTTTGGTGCTATAACTGATGGGACGGGGT
CATTCGCTCTTCGTTCTGTGCCTAACGGAGCCTGGACTTTGGCCGCACGG
CCCGCTAACCCTCTCGATGACTTTCCCGGTGCTCGTAGACTTGTCGCTGT
AAATAGTGACGAAATCACAGATGTAGGAGTCATCAAGCTGTTTGAGCCAA
GCTTTGTCTCGGGTACGGTTCTTGTGGAGGGCAGTGCTGATGGAGCTCTG
GTCGGAATCTTTGAGGAGGGAAGCCTCACTACAGCTTTCGAGAATGGGAC
CTACTTGCTCAGTAAGGTTCCGCCCGGAACTCATGAGATGGTTGCCGTTC
TCAACGGGGCTTCGGTTACGCTCCCAAACGTTGAAGTAGCGCCAAACGAG
GTAAAACGCTTCGTCGACTTTAATTTTGCCAACTCAGAAACCCTGCCTGC
CCGTATCGAAGGTACAGCACGGTTCGTTCTGGGGACAAGTGAGGGCATTT
CGGTCGCGCTTCTTGATGCCAAAACCGGAGAGATTGTGGGTGAGCAAGAT
GTAGACGAAGACGGAGCATTTGCCTTCGAGGATGTCGCTCTGGGCGCATA
TGTTGTGCGTGCAAAAAAGGATATGGTAGGGCAAGTTCAGACCGTCGAAG
GTCAGCCTGCTGTGGGGGCTACAGTTACCATTCCAGGAACGCCGTTTGGT
GCTATAACTGATGGGACGGGGTCATTCGCTCTTCGTTCTGTGCCTAACGG
AGCCTGGACTTTGGCCGCACGGCCCGCTAACCCTCTCGATGACTTTCCCG
GTGCTCGTAGACTTGTCGCTGTAAATAGTGACGAAATCACAGATGTAGGA
GTCATCAAGCTGTTTGAGCCAAGCTTTGTCTCGGGTACGGTTCTTGTGGA
GGGCAGTGCTGATGGAGCTCTGGTCGGAATCTTTGAGGAGGGAAGCCTCA
CTACAGCTTTCGAGAATGGGACCTACTTGCTCAGTAAGGTTCCGCCCGGA
ACTCATGAGATGGTTGCCGTTCTCAACGGGGCTTCGGTTACGCTCCCAAA
CGTTGAAGTAGCGCCAAACGAGGTAAAACGCTTCGTCGACTTTAATTTTG
CCAACTCAGAAACCCTGCCTGCCCGTATCGAAGGTACAGCACGGTTCGTT
CTGGGGACAAGTGAGGGCATTTCGGTCGCGCTTCTTGATGCCAAAACCGG
AGAGATTGTGGGTGAGCAAGATGTAGACGAAGACGGAGCATTTGCCTTCG
AGGATGTCGCTCTGGGCGCATATGTTGTGCGTGCAAAAAAGGAT
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