mRNA_P-canaliculata_contig97214.23807.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97214.23807.1
Unique NamemRNA_P-canaliculata_contig97214.23807.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig97214.23807.1 vs. uniprot
Match: M5UBM4_9BACT (Uncharacterized protein n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5UBM4_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 4.410e-15
Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:    1 VFNLDLKRAEMAIAGGRLDEAAKLLQSSAVAKHATGQRLSDRLITELLKRAQLHLDQGRLQPARIDADLAGRFGGQQVAVHELLQRI 261
            +F+ DLKR E+A+  GRLDEA  LL+SS    H   Q L DRL+ E ++R   H D GR   AR DAD A   GG+Q+ + +L QRI
Sbjct:    6 LFHTDLKRTEIAMNAGRLDEAFALLKSSPSRHHRDAQTLVDRLVDEFVRRGNQHFDDGRADDARHDADAAYHLGGRQIEIAKLRQRI 92
[Close]
BLAST of mRNA_P-canaliculata_contig97214.23807.1 vs. uniprot
Match: M5T5D6_9BACT (Uncharacterized protein n=3 Tax=Rhodopirellula TaxID=265488 RepID=M5T5D6_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 5.130e-10
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:   13 DLKRAEMAIAGGRLDEAAKLLQ-----SSAVAKHATGQRLSDRLITELLKRAQLHLDQGRLQPARIDADLAGRFGGQQVAVHELLQRI 261
            DL+R ++A+  GRLDEA  L+Q     SS    H   Q L+DR+I+EL++R   H D+ R   A+ DAD A + GG+Q+ + +L  RI
Sbjct:   54 DLERTKLALDAGRLDEAFTLIQFALLKSSPYRHHHETQMLTDRIISELIRRGNQHFDEQRPDDAQYDADAAFQLGGRQIEIAKLRHRI 141
[Close]
BLAST of mRNA_P-canaliculata_contig97214.23807.1 vs. uniprot
Match: A0A518BW98_9BACT (Tetratricopeptide repeat protein n=1 Tax=Mucisphaera calidilacus TaxID=2527982 RepID=A0A518BW98_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 3.300e-5
Identity = 29/63 (46.03%), Postives = 34/63 (53.97%), Query Frame = 1 
Query:   10 LDLKRAEMAIAGGRLDEAAKLLQSSAVAKHATGQRLSDRLITELLKRAQLHLDQGRLQPARID 198
            L  KRAE A+AGGRLDEA ++     V  H  GQ L   L+    +R   HLD GRL  A  D
Sbjct:    4 LQFKRAEAALAGGRLDEAWRIASKPRVRAHRRGQALIQNLLAAWTRRGNEHLDHGRLDQAMQD 66
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97214.23807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
M5UBM4_9BACT4.410e-1548.28Uncharacterized protein n=2 Tax=Rhodopirellula Tax... [more]
M5T5D6_9BACT5.130e-1042.05Uncharacterized protein n=3 Tax=Rhodopirellula Tax... [more]
A0A518BW98_9BACT3.300e-546.03Tetratricopeptide repeat protein n=1 Tax=Mucisphae... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97214contigP-canaliculata_contig97214:161..421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size231
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817336.3444567-UTR-P-canaliculata_contig97214:160..1901622817336.3444567-UTR-P-canaliculata_contig97214:160..190Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97214 161..190 +
1693495231.178207-UTR-P-canaliculata_contig97214:160..1901693495231.178207-UTR-P-canaliculata_contig97214:160..190Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97214 161..190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817336.3609185-CDS-P-canaliculata_contig97214:190..4211622817336.3609185-CDS-P-canaliculata_contig97214:190..421Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97214 191..421 +
1693495231.1866257-CDS-P-canaliculata_contig97214:190..4211693495231.1866257-CDS-P-canaliculata_contig97214:190..421Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97214 191..421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97214.23807.1prot_P-canaliculata_contig97214.23807.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97214 191..421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97214.23807.1

>prot_P-canaliculata_contig97214.23807.1 ID=prot_P-canaliculata_contig97214.23807.1|Name=mRNA_P-canaliculata_contig97214.23807.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=77bp
MAIAGGRLDEAAKLLQSSAVAKHATGQRLSDRLITELLKRAQLHLDQGRL
QPARIDADLAGRFGGQQVAVHELLQRI
back to top

mRNA from alignment at P-canaliculata_contig97214:161..421+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97214.23807.1 ID=mRNA_P-canaliculata_contig97214.23807.1|Name=mRNA_P-canaliculata_contig97214.23807.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at P-canaliculata_contig97214:161..421+ (Pelvetia canaliculata dioecious)
GTGTTTAATCTTGACTTAAAACGAGCTGAAATGGCAATCGCGGGCGGGCG
ACTCGATGAAGCTGCAAAGCTGCTTCAGTCATCCGCGGTCGCCAAGCACG
CCACTGGCCAGCGATTGAGCGATCGGTTAATTACCGAACTTCTCAAGCGA
GCTCAATTGCACTTGGACCAGGGCCGCTTACAACCCGCTCGGATAGACGC
AGACCTGGCCGGGCGGTTCGGAGGACAACAAGTTGCTGTCCATGAGTTAC
TCCAGCGAATC
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig97214:161..421+

>mRNA_P-canaliculata_contig97214.23807.1 ID=mRNA_P-canaliculata_contig97214.23807.1|Name=mRNA_P-canaliculata_contig97214.23807.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at P-canaliculata_contig97214:161..421+ (Pelvetia canaliculata dioecious)
ATGGCAATCGCGGGCGGGCGACTCGATGAAGCTGCAAAGCTGCTTCAGTC
ATCCGCGGTCGCCAAGCACGCCACTGGCCAGCGATTGAGCGATCGGTTAA
TTACCGAACTTCTCAAGCGAGCTCAATTGCACTTGGACCAGGGCCGCTTA
CAACCCGCTCGGATAGACGCAGACCTGGCCGGGCGGTTCGGAGGACAACA
AGTTGCTGTCCATGAGTTACTCCAGCGAATCATGGCAATCGCGGGCGGGC
GACTCGATGAAGCTGCAAAGCTGCTTCAGTCATCCGCGGTCGCCAAGCAC
GCCACTGGCCAGCGATTGAGCGATCGGTTAATTACCGAACTTCTCAAGCG
AGCTCAATTGCACTTGGACCAGGGCCGCTTACAACCCGCTCGGATAGACG
CAGACCTGGCCGGGCGGTTCGGAGGACAACAAGTTGCTGTCCATGAGTTA
CTCCAGCGAATC
back to top