mRNA_P-canaliculata_contig97116.23797.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97116.23797.1
Unique NamemRNA_P-canaliculata_contig97116.23797.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig97116.23797.1 vs. uniprot
Match: A0A6H5KDP6_9PHAE (Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KDP6_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.960e-15
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    1 DPKYPVDVSGGTVEGMETTCPFDDREDCNA----------TATSRCILPLGLVESGMDIGAPGAGCL 171
            DP+ PVDVSGG +EG+ TTCPFD REDC+           + TSRCILPLG+  + M +  PGA C+
Sbjct:  474 DPRLPVDVSGGAIEGVATTCPFDKREDCSCGSFEMKLQANSTTSRCILPLGITIAAMGVDTPGASCV 540
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97116.23797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KDP6_9PHAE5.960e-1552.24Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97116contigP-canaliculata_contig97116:96..768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue3.1e-12
Seed eggNOG ortholog2880.D7G3S6
EggNOG free text desc.Pro-kumamolisin, activation domain
EggNOG OGs2C2GH@1,2S2RS@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size173
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817335.6221137-CDS-P-canaliculata_contig97116:95..1811622817335.6221137-CDS-P-canaliculata_contig97116:95..181Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97116 96..181 +
1693495230.7177262-CDS-P-canaliculata_contig97116:95..1811693495230.7177262-CDS-P-canaliculata_contig97116:95..181Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97116 96..181 +
1622817335.633966-CDS-P-canaliculata_contig97116:683..7681622817335.633966-CDS-P-canaliculata_contig97116:683..768Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97116 684..768 +
1693495230.7312255-CDS-P-canaliculata_contig97116:683..7681693495230.7312255-CDS-P-canaliculata_contig97116:683..768Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97116 684..768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97116.23797.1prot_P-canaliculata_contig97116.23797.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97116 96..768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97116.23797.1

>prot_P-canaliculata_contig97116.23797.1 ID=prot_P-canaliculata_contig97116.23797.1|Name=mRNA_P-canaliculata_contig97116.23797.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=57bp
DPKYPVDVSGGTVEGMETTCPFDDREDCNATATSRCILPLGLVESGMDIG
APGAGCL
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mRNA from alignment at P-canaliculata_contig97116:96..768+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97116.23797.1 ID=mRNA_P-canaliculata_contig97116.23797.1|Name=mRNA_P-canaliculata_contig97116.23797.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=673bp|location=Sequence derived from alignment at P-canaliculata_contig97116:96..768+ (Pelvetia canaliculata dioecious)
GACCCGAAGTATCCAGTTGACGTGTCCGGTGGGACGGTGGAAGGGATGGA
GACGACGTGTCCCTTCGATGACAGAGAGGACTGCAAGTGCGGCTCGTTCG
AAATGGAACTTCGCCACAAGTGAATGAGTCAGTTAGATATCGAGATGTTC
TGATGTTGCCGTGGAGGGGCAGAATGGGATGAGATCGTAAGGCATGAAAA
TTGGTGGAACAAGAGGAGGGACGTGGCACCGAGGGACCTTTACGTTCGGC
CAACCTGTTTCCGTTACGCTTTCGTCCCATCACATACCACATTCTTTTCA
TTCCATCCCAGCTATCGATTTACGGTTTCGTTCCATCCCATTATGTTCCT
AGTCCCTAACCGTCCCGTTCTCGCGATGCACCCCAGAGAAGTAGCCGTGA
AGGTCTCCATCGTTGTCGAGATCCTGGACCCCGATGTAGCGTCAACTTAC
ACGGACTGTATCGAGTTAGAGGTCATTAGGTTGCTGATTGTTCCTCTAGG
CTAACTTTTGTCCACGTGTTTGCATGTGTTTGTGTGTGTATGTGGTGCTA
ATGATCTAATGATCTAATGATGATCTGGCCCACCGCAGTGCGACGGCGAC
GTCGCGGTGCATCTTGCCGCTGGGGCTAGTTGAGTCGGGGATGGACATCG
GAGCGCCCGGCGCCGGTTGCTTG
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Coding sequence (CDS) from alignment at P-canaliculata_contig97116:96..768+

>mRNA_P-canaliculata_contig97116.23797.1 ID=mRNA_P-canaliculata_contig97116.23797.1|Name=mRNA_P-canaliculata_contig97116.23797.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at P-canaliculata_contig97116:96..768+ (Pelvetia canaliculata dioecious)
GACCCGAAGTATCCAGTTGACGTGTCCGGTGGGACGGTGGAAGGGATGGA
GACGACGTGTCCCTTCGATGACAGAGAGGACTGCAAGACCCGAAGTATCC
AGTTGACGTGTCCGGTGGGACGGTGGAAGGGATGGAGACGACGTGTCCCT
TCGATGACAGAGAGGACTGCAATGCGACGGCGACGTCGCGGTGCATCTTG
CCGCTGGGGCTAGTTGAGTCGGGGATGGACATCGGAGCGCCCGGCGCCGG
TTGCTTGTGCGACGGCGACGTCGCGGTGCATCTTGCCGCTGGGGCTAGTT
GAGTCGGGGATGGACATCGGAGCGCCCGGCGCCGGTTGCTTG
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