mRNA_P-canaliculata_contig97108.23794.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig97108.23794.1 vs. uniprot
Match: UPI00167635FC (DUF4175 family protein n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI00167635FC) HSP 1 Score: 413 bits (1061), Expect = 1.170e-135 Identity = 203/263 (77.19%), Postives = 231/263 (87.83%), Query Frame = 1
Query: 1 MSENLDTIIQSTQRLVSRARVRLFWETYAPTLAPSALAIGLFSLGAWLGLWQWIGDPVRLIALAVTLFFVIRSILRAMPLRRPTLSDARRRVEMDSGQAHRPLDVLDDRPALSADVWPAHQKKALGQAGLLKSAAPRPTLAPVDKYYLRVIVPVLLLVVAISMAGFSFERLRKAVTPTWQSAIRPSQISYEAWIDPPAYTGRPPIYFKDGADVAVPAGSEFVARISGVKTAPRPRFSQGWRSRFLTPTRLGAKSFEVREIIND 789
MS++LDT+IQ+T+RLV+RAR+RLFWETYAPTLAP+A AIGLF LGAWLG+WQW GDPVRLIALA TLFFV+RSILRA+ LR PT SDARRRVE DSGQAHRPLDVLDDRPALSA+ WPAHQK AL QA L+SA PRP L+ VD Y++R+ +PV L + AI MAGFSFERLR A P+WQS IR S ISYEAWIDPPAYTGRPPIYFKDGAD+AVPAGSEFVAR+SGVK APRPR +QGWRS+FLTP RLGAKSFE+R++I +
Sbjct: 1 MSDSLDTVIQTTRRLVARARLRLFWETYAPTLAPAASAIGLFVLGAWLGVWQWFGDPVRLIALAATLFFVVRSILRALKLRTPTRSDARRRVEADSGQAHRPLDVLDDRPALSAEAWPAHQKAALAQATALRSAKPRPALSTVDPYFVRIFLPVALGLAAIYMAGFSFERLRSAAAPSWQSDIRSSDISYEAWIDPPAYTGRPPIYFKDGADIAVPAGSEFVARLSGVKDAPRPRLTQGWRSKFLTPQRLGAKSFEIRQVIEE 263
BLAST of mRNA_P-canaliculata_contig97108.23794.1 vs. uniprot
Match: UPI00041A8EB1 (DUF4175 family protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI00041A8EB1) HSP 1 Score: 250 bits (638), Expect = 1.930e-73 Identity = 136/265 (51.32%), Postives = 180/265 (67.92%), Query Frame = 1
Query: 1 MSENLDT--IIQSTQRLVSRARVRLFWETYAPTLAPSALAIGLFSLGAWLGLWQWIGDPVRLIALAVTLFFVIRSILRAMPLRRPTLSDARRRVEMDSGQAHRPLDVLDDRPALSADVWPAHQKKALGQAGLLKSAAPRPTLAPVDKYYLRVIVPVLLLVVAISMAGFSFERLRKAVTPTWQSAIRPSQISYEAWIDPPAYTGRPPIYFKDGADVAVPAGSEFVARISGVKTAPRPRFSQGWRSRFLTPTRLGAKSFEVREIIND 789
MS+N DT +++ T V RA+ L+WE YAP A +A +F +GA+ G+W+ IGDP RLI LA+ LFF+ ++ RA +RP LS+ARRRVE DS HRPLDVL+DRPA+S WPAH + A A L+ A R L P+D YYLR ++P L + + G ++ERLR++V+PTWQSAI P+ ++YEAW+DPP YTGRPP+YFKD V VPAGSE VARISGVK APR + + ++L RLG +SFE R I+ +
Sbjct: 1 MSQNPDTSSLLKRTGGYVRRAQASLYWERYAPVFALAAAIAIVFLIGAFGGIWERIGDPWRLIVLAIALFFLAKAAWRARVQKRPDLSEARRRVEGDSNIKHRPLDVLEDRPAISEAAWPAHFETARRNAENLRPARWRHALKPIDPYYLRFVLPCALGLAMMVGFGDNYERLRRSVSPTWQSAINPADVTYEAWVDPPEYTGRPPLYFKDKNKVDVPAGSELVARISGVKDAPRLKLGR----KYLPLKRLGPQSFEARAILKE 261
BLAST of mRNA_P-canaliculata_contig97108.23794.1 vs. uniprot
Match: A0A420WCY2_9PROT (Uncharacterized protein DUF4175 n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WCY2_9PROT) HSP 1 Score: 243 bits (620), Expect = 5.720e-71 Identity = 127/250 (50.80%), Postives = 170/250 (68.00%), Query Frame = 1
Query: 40 RLVSRARVRLFWETYAPTLAPSALAIGLFSLGAWLGLWQWIGDPVRLIALAVTLFFVIRSILRAMPLRRPTLSDARRRVEMDSGQAHRPLDVLDDRPALSADVWPAHQKKALGQAGLLKSAAPRPTLAPVDKYYLRVIVPVLLLVVAISMAGFSFERLRKAVTPTWQSAIRPSQISYEAWIDPPAYTGRPPIYFKDGADV-AVPAGSEFVARISGVKTAPRPRFSQGWRSRFLTPTRLGAKSFEVREIIN 786
R + AR+ LFWE Y P +AL IGLF +G + GLW+ IGDP R IA L+ ++R+ A P++SDA+RRVE DSGQ HRPLDVLDD+PA+ A+ W AH ++A+ Q+ L S PT+ P D YYLR +PV++ I +G + ERLR++V P WQS I P+++S+EAWIDPP YTGRPPIYFK G D+ ++P GSE+VAR++G KT RP+ G +S +L T+LG KSFE R I+
Sbjct: 29 RYICTARIWLFWERYVPVFLLAALIIGLFLIGVFSGLWERIGDPWRGIAFIGALYVLVRAAYAAQKRPLPSISDAKRRVERDSGQRHRPLDVLDDKPAIGAEGWSAHYERAVSQSKSLNSPKLIPTVQPRDPYYLRYALPVMIAGAMIMGSGNNMERLRRSVLPVWQSGINPAEVSFEAWIDPPDYTGRPPIYFK-GQDIDSIPEGSEWVARMNGAKTPTRPQLRLGGKSHYLRLTKLGPKSFEARAAID 277
BLAST of mRNA_P-canaliculata_contig97108.23794.1 vs. uniprot
Match: A0A2G2R2C6_9PROT (Uncharacterized protein n=3 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2R2C6_9PROT) HSP 1 Score: 234 bits (597), Expect = 1.140e-67 Identity = 132/265 (49.81%), Postives = 165/265 (62.26%), Query Frame = 1
Query: 16 DTIIQSTQRLVSRARVRLFWETYAPTLAPSALAIGLFSLGAWLGLWQWIGDPVRLIALAVTLFFVIRSILRAMPLRRPTLSDARRRVEMDSGQAHRPLDVLDDRPALSAD--------VWPAHQKKALGQAGLLKSAAPRPTLAPVDKYYLRVIVPVLLLVVAISMAGFSFERLRKAVTPTWQSAIRPSQISYEAWIDPPAYTGRPPIYFKDGADVAVPAGSEFVARISGVKTAPRPRFSQGWRSRFLTPTRLGAKSFEVREIIN 786
D + + RL RA L WETYAPTLA L I LF+ A GLWQ IGDP RLI L++ ++ +++S L A PT S ARRRVE+DSG +HRPLD L D PAL+ W H A Q +++ RPTLAP+DKY+LR+ P+LL++ + AG ++ERLR ++TP W + YEAWIDPP YTGRPP YFK + P GSEFVARISGVKTAPR +G R+R +T RLG +SFE R IIN
Sbjct: 14 DILTKRATRLTKRAYRHLLWETYAPTLALGVLFILLFATAAAFGLWQRIGDPWRLIGLSIAVYCIVKSALSARQRHLPTQSQARRRVELDSGLSHRPLDTLVDTPALNDSNDDAPFNAAWQNHLAHAQVQIQRAGTSSLRPTLAPMDKYFLRIATPILLMLAFMVGAGDNYERLRASLTPGWIYGMSAKTAHYEAWIDPPQYTGRPPSYFKGQTSMDAPEGSEFVARISGVKTAPRLILREGNRTRRITAKRLGPQSFEARAIIN 278
BLAST of mRNA_P-canaliculata_contig97108.23794.1 vs. uniprot
Match: A0A848V0S2_9PROT (DUF4175 family protein n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V0S2_9PROT) HSP 1 Score: 226 bits (576), Expect = 9.210e-65 Identity = 126/262 (48.09%), Postives = 158/262 (60.31%), Query Frame = 1
Query: 1 MSENLDTIIQSTQRLVSRARVRLFWETYAPTLAPSALAIGLFSLGAWLGLWQWIGDPVRLIALAVTLFFVIRSILRAMPLRRPTLSDARRRVEMDSGQAHRPLDVLDDRPALSADVWPAHQKKALGQAGLLKSAAPRPTLAPVDKYYLRVIVPVLLLVVAISMAGFSFERLRKAVTPTWQSAIRPSQISYEAWIDPPAYTGRPPIYFKDGADVAVPAGSEFVARISGVKTAPRPRFSQGWRSRFLTPTRLGAKSFEVREIIN 786
MS +++ QRL AR L+WE Y+P A +A I LF +G++ GLWQ IGDP RLI L + + RSI RA LRRP +S ARRRVE DS HRPLD L DRPALS + WP H +KA LK RP L VDKY+LR P L++ + AG SFERLR ++TP W + I++EAWIDPP YTGRPP+YFK + P GSE VARI G K R + ++ ++ R+G SFEVR II+
Sbjct: 1 MSSRNAFLLKKAQRLTRSARALLYWEQYSPVYALAAFLIALFMIGSFSGLWQLIGDPWRLIVLIAAVVILGRSIWRARKLRRPDISAARRRVEEDSNVRHRPLDTLYDRPALSEEGWPEHYRKAEDVVDRLKRPRLRPALGKVDKYFLRFATPAALVLALMVGAGDSFERLRHSLTPGWVNGSLGDDITFEAWIDPPEYTGRPPVYFKKSNQLEAPQGSELVARIIGTKNPTRLKLRSENGTKHISLKRIGPDSFEVRAIID 262
BLAST of mRNA_P-canaliculata_contig97108.23794.1 vs. uniprot
Match: A0A2G2J4R4_9PROT (Uncharacterized protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2J4R4_9PROT) HSP 1 Score: 225 bits (573), Expect = 2.280e-64 Identity = 125/258 (48.45%), Postives = 158/258 (61.24%), Query Frame = 1
Query: 22 IIQSTQRLVSRARVRLFWETYAPTLAPSALAIGLFSLGAWLGLWQWIGDPVRLIALAVTLFFVIRSILRAMPLRRPTLSDARRRVEMDSGQAHRPLDVLDDRPALSADVWPAHQKKALGQAGLLKSAAP---RPTLAPVDKYYLRVIVPVLLLVVAISMAGFSFERLRKAVTPTWQSAIRPSQISYEAWIDPPAYTGRPPIYFKDGADVAVPAGSEFVARISGVKTAPRPRFSQGWRSRFLTPTRLGAKSFEVREIIN 786
+ + RL RA +L WE YAP LA + LF GA +GLWQ IGDP R IAL + L F+ RS LR RRPT S ARRRVE D+ HRP D + D A+S+ PA Q L+ AAP RP LAP+DKY+LR +P +L++ A+ G ++ER+R ++TP W S I + YEAW+DPP YT RPP YFK + P GSEFVARISGVKTAPR G R+R ++ RLG KSFE R +++
Sbjct: 5 LTKRADRLTRRAYGQLLWEIYAPVLALGVFCVLLFVAGASVGLWQRIGDPWRFIALGIVLVFLTRSALRVRTHRRPTRSQARRRVETDNNLNHRPFDTIRDSSAISSSDDPAWQNHLNAAKALVNQAAPSRLRPALAPIDKYFLRFALPCVLVLCAMVGGGDNYERIRASLTPGWISGISAKTVRYEAWVDPPEYTNRPPSYFKQSNTITAPEGSEFVARISGVKTAPRLIVRTGNRTRRISAKRLGPKSFEARIVLS 262
BLAST of mRNA_P-canaliculata_contig97108.23794.1 vs. uniprot
Match: A0A2G2N2U8_9PROT (Uncharacterized protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2N2U8_9PROT) HSP 1 Score: 224 bits (570), Expect = 6.910e-64 Identity = 131/267 (49.06%), Postives = 163/267 (61.05%), Query Frame = 1
Query: 10 NLDTIIQSTQRLVSRARVRLFWETYAPTLAPSALAIGLFSLGAWLGLWQWIGDPVRLIALAVTLFFVIRSILRAMPLRRPTLSDARRRVEMDSGQAHRPLDVLDDRPALSAD-------VWPAHQKKALGQAGLLKSAAPRPTLAPVDKYYLRVIVPVLLLVVAISMAGFSFERLRKAVTPTWQSAIRPSQISYEAWIDPPAYTGRPPIYFKDGADVAVPAGSEFVARISGVKTAPR--PRFSQGWRSRFLTPTRLGAKSFEVREII 783
N + + L RA L WETY P LA + L + LF + GLWQ+IGDP RLI L FFV++S A +RPT S ARRRVE DSG +HRPLD + D PAL+ + W H K A Q +++ RP LAP+DKYYLR+ VPV+L++ + G ++ERLR ++TP W S + YEAWIDPP YT RPP YFK + VP GSEFVARISGVKTAPR R G ++R +TP RLG +SFE R II
Sbjct: 12 NKSVLSKRAHSLTRRAYRHLLWETYVPVLALAVLFVLLFVVAGAAGLWQFIGDPWRLIGLVFAGFFVLKSAFAARRKQRPTGSQARRRVEHDSGLSHRPLDAVVDTPALAQENDPAKNQAWQNHXKXAREQIQRAGTSSLRPALAPIDKYYLRLAVPVMLILAFMVGFGDNYERLRASLTPGWISGVSAKSAHYEAWIDPPQYTARPPSYFKGQKSLQVPEGSEFVARISGVKTAPRLIVRRKNG-QTRRITPKRLGPQSFEARAII 277
BLAST of mRNA_P-canaliculata_contig97108.23794.1 vs. uniprot
Match: A0A8J3CSB6_9PROT (Uncharacterized protein n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CSB6_9PROT) HSP 1 Score: 217 bits (553), Expect = 1.730e-61 Identity = 116/249 (46.59%), Postives = 151/249 (60.64%), Query Frame = 1
Query: 40 RLVSRARVRLFWETYAPTLAPSALAIGLFSLGAWLGLWQWIGDPVRLIALAVTLFFVIRSILRAMPLRRPTLSDARRRVEMDSGQAHRPLDVLDDRPALSADVWPAHQKKALGQAGLLKSAAPRPTLAPVDKYYLRVIVPVLLLVVAISMAGFSFERLRKAVTPTWQSAIRPSQISYEAWIDPPAYTGRPPIYFKDGADVAVPAGSEFVARISGVKTAPRPRFSQGWRSRFLTPTRLGAKSFEVREIIN 786
RL + AR RL WE YAP +A ALA+ + + WLGLW+ GDP R+IAL VT+ +IR++ RA +R PT SDARRR+E +G AHRPLD LDD P LS +WPAH A A ++ P L+ +D+Y LR I P+ L + G S ER+R ++PT QS P +++EAW+DPP YTGRPP+Y + + P GS V R SG PRPR+ RFLT LG + EVR II+
Sbjct: 18 RLTTLARARLIWEGYAPIVALPALALSILLILTWLGLWEVAGDPFRIIALVVTVGLIIRAVRRARHIRWPTDSDARRRLENTAGLAHRPLDTLDDAPILSPTLWPAHVAHAQKDADTIRRVGRTPALSVIDRYGLRFITPIALGLALFLSWGLSMERVRHGLSPTVQSPTNPYSLTFEAWVDPPDYTGRPPLYAQGDGVIRAPVGSTLVVRASGASDLPRPRYIGAEGQRFLTVDALGQNNSEVRTIID 266
BLAST of mRNA_P-canaliculata_contig97108.23794.1 vs. uniprot
Match: A0A7C3GWQ4_9GAMM (DUF4175 family protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C3GWQ4_9GAMM) HSP 1 Score: 206 bits (525), Expect = 2.460e-61 Identity = 122/254 (48.03%), Postives = 155/254 (61.02%), Query Frame = 1
Query: 43 LVSRARVRLFWETYAPTLAPSALAIGLFSLGAWLGLWQWIGDPVRLIALAVTLFFVIRSILRAMPLRRPTLSDARRRVEMDSGQAHRPLDVLDDRPALS---ADVWPAHQKKALGQAGLLKSAAP---RPTLAPVDKYYLRVIVPVLLLVVAISMAGFSFERLRKAVTPTWQSAIRPSQISYEAWIDPPAYTGRPPIYFKDGADVAVPAGSEFVARISGVKTAPRPRFSQGWRSRFLTPTRLGAKSFEVREIIN 786
LV RA L++ETYAP LA LAI LF A G+WQ IGDP R IAL TL + +S+L A + P LS A+RRVE+D+ HRPLD + D+PA S VW H K+ L++A P RPTL VDKYYLR + P LL++ + AG ++ERLR A+TP W I ++EAWIDPP YT RPP YFK+ V P GS FV R++G+KTAPR G +++ + RLG KSFE I+N
Sbjct: 12 LVRRAHRHLWFETYAPVLAIGILAIVLFFTCAAFGIWQRIGDPWRYIALLATLVVLAKSLLGAQRQKPPNLSAAKRRVELDNALHHRPLDTIIDKPAFSNHDGAVWTTHLSKS---QKCLENATPTKLRPTLGEVDKYYLRFVAPALLVLAMMVGAGDNYERLRSALTPGWIYGISAKDTNFEAWIDPPEYTLRPPSYFKNSNRVNAPEGSRFVVRMTGIKTAPRLLIKDGLKTKRVKAKRLGPKSFEASVIVN 262
BLAST of mRNA_P-canaliculata_contig97108.23794.1 vs. uniprot
Match: A0A2G2GJE6_9PROT (Uncharacterized protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GJE6_9PROT) HSP 1 Score: 215 bits (547), Expect = 1.070e-60 Identity = 123/255 (48.24%), Postives = 154/255 (60.39%), Query Frame = 1
Query: 37 QRLVSRARVRLFWETYAPTLAPSALAIGLFSLGAWLGLWQWIGDPVRLIALAVTLFFVIRSILRAMPLRRPTLSDARRRVEMDSGQAHRPLDVLDDRPAL----SADV-WPAHQKKALGQAGLLKSAAPRPTLAPVDKYYLRVIVPVLLLVVAISMAGFSFERLRKAVTPTWQSAIRPSQISYEAWIDPPAYTGRPPIYFKDGADVAVPAGSEFVARISGVKTAPRPRFSQGWRSRFLTPTRLGAKSFEVREIIN 786
+RL +RA +L WE YAP LA + LF +GA GLWQ+IGDP R +ALA+TL +L A +P S ARRRVE+D+ HRP D + D AL S D+ W H A Q + RP LAP+DKYYLR VP L++ A+ G ++ER+R ++TP W S I +YEAWIDPP YT RPP YFK + P GSEFVARISGVK+APR + R+R + PTRLG KSFE R I+
Sbjct: 10 ERLTARAYRQLLWECYAPVLALGVCLLLLFIVGASSGLWQFIGDPWRGVALAITLAVFTWCVLHARKRLKPNTSQARRRVELDNNFKHRPFDTITDSSALVSSGSDDIAWQHHLDVARAQVNQAAPSRLRPALAPMDKYYLRFAVPCLVVAAAMFGGGDNYERIRASLTPGWMSGISAKNAAYEAWIDPPEYTNRPPSYFKKSNTIHAPEGSEFVARISGVKSAPRLIIREKGRTRRIRPTRLGPKSFEARAYIS 264 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97108.23794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig97108.23794.1 >prot_P-canaliculata_contig97108.23794.1 ID=prot_P-canaliculata_contig97108.23794.1|Name=mRNA_P-canaliculata_contig97108.23794.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=263bp MSENLDTIIQSTQRLVSRARVRLFWETYAPTLAPSALAIGLFSLGAWLGLback to top mRNA from alignment at P-canaliculata_contig97108:299..1087+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig97108.23794.1 ID=mRNA_P-canaliculata_contig97108.23794.1|Name=mRNA_P-canaliculata_contig97108.23794.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=789bp|location=Sequence derived from alignment at P-canaliculata_contig97108:299..1087+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig97108:299..1087+ >mRNA_P-canaliculata_contig97108.23794.1 ID=mRNA_P-canaliculata_contig97108.23794.1|Name=mRNA_P-canaliculata_contig97108.23794.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1578bp|location=Sequence derived from alignment at P-canaliculata_contig97108:299..1087+ (Pelvetia canaliculata dioecious)back to top |