mRNA_P-canaliculata_contig97108.23794.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97108.23794.1
Unique NamemRNA_P-canaliculata_contig97108.23794.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig97108.23794.1 vs. uniprot
Match: UPI00167635FC (DUF4175 family protein n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI00167635FC)

HSP 1 Score: 413 bits (1061), Expect = 1.170e-135
Identity = 203/263 (77.19%), Postives = 231/263 (87.83%), Query Frame = 1
Query:    1 MSENLDTIIQSTQRLVSRARVRLFWETYAPTLAPSALAIGLFSLGAWLGLWQWIGDPVRLIALAVTLFFVIRSILRAMPLRRPTLSDARRRVEMDSGQAHRPLDVLDDRPALSADVWPAHQKKALGQAGLLKSAAPRPTLAPVDKYYLRVIVPVLLLVVAISMAGFSFERLRKAVTPTWQSAIRPSQISYEAWIDPPAYTGRPPIYFKDGADVAVPAGSEFVARISGVKTAPRPRFSQGWRSRFLTPTRLGAKSFEVREIIND 789
            MS++LDT+IQ+T+RLV+RAR+RLFWETYAPTLAP+A AIGLF LGAWLG+WQW GDPVRLIALA TLFFV+RSILRA+ LR PT SDARRRVE DSGQAHRPLDVLDDRPALSA+ WPAHQK AL QA  L+SA PRP L+ VD Y++R+ +PV L + AI MAGFSFERLR A  P+WQS IR S ISYEAWIDPPAYTGRPPIYFKDGAD+AVPAGSEFVAR+SGVK APRPR +QGWRS+FLTP RLGAKSFE+R++I +
Sbjct:    1 MSDSLDTVIQTTRRLVARARLRLFWETYAPTLAPAASAIGLFVLGAWLGVWQWFGDPVRLIALAATLFFVVRSILRALKLRTPTRSDARRRVEADSGQAHRPLDVLDDRPALSAEAWPAHQKAALAQATALRSAKPRPALSTVDPYFVRIFLPVALGLAAIYMAGFSFERLRSAAAPSWQSDIRSSDISYEAWIDPPAYTGRPPIYFKDGADIAVPAGSEFVARLSGVKDAPRPRLTQGWRSKFLTPQRLGAKSFEIRQVIEE 263          
BLAST of mRNA_P-canaliculata_contig97108.23794.1 vs. uniprot
Match: UPI00041A8EB1 (DUF4175 family protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI00041A8EB1)

HSP 1 Score: 250 bits (638), Expect = 1.930e-73
Identity = 136/265 (51.32%), Postives = 180/265 (67.92%), Query Frame = 1
Query:    1 MSENLDT--IIQSTQRLVSRARVRLFWETYAPTLAPSALAIGLFSLGAWLGLWQWIGDPVRLIALAVTLFFVIRSILRAMPLRRPTLSDARRRVEMDSGQAHRPLDVLDDRPALSADVWPAHQKKALGQAGLLKSAAPRPTLAPVDKYYLRVIVPVLLLVVAISMAGFSFERLRKAVTPTWQSAIRPSQISYEAWIDPPAYTGRPPIYFKDGADVAVPAGSEFVARISGVKTAPRPRFSQGWRSRFLTPTRLGAKSFEVREIIND 789
            MS+N DT  +++ T   V RA+  L+WE YAP  A +A    +F +GA+ G+W+ IGDP RLI LA+ LFF+ ++  RA   +RP LS+ARRRVE DS   HRPLDVL+DRPA+S   WPAH + A   A  L+ A  R  L P+D YYLR ++P  L +  +   G ++ERLR++V+PTWQSAI P+ ++YEAW+DPP YTGRPP+YFKD   V VPAGSE VARISGVK APR +  +    ++L   RLG +SFE R I+ +
Sbjct:    1 MSQNPDTSSLLKRTGGYVRRAQASLYWERYAPVFALAAAIAIVFLIGAFGGIWERIGDPWRLIVLAIALFFLAKAAWRARVQKRPDLSEARRRVEGDSNIKHRPLDVLEDRPAISEAAWPAHFETARRNAENLRPARWRHALKPIDPYYLRFVLPCALGLAMMVGFGDNYERLRRSVSPTWQSAINPADVTYEAWVDPPEYTGRPPLYFKDKNKVDVPAGSELVARISGVKDAPRLKLGR----KYLPLKRLGPQSFEARAILKE 261          
BLAST of mRNA_P-canaliculata_contig97108.23794.1 vs. uniprot
Match: A0A420WCY2_9PROT (Uncharacterized protein DUF4175 n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WCY2_9PROT)

HSP 1 Score: 243 bits (620), Expect = 5.720e-71
Identity = 127/250 (50.80%), Postives = 170/250 (68.00%), Query Frame = 1
Query:   40 RLVSRARVRLFWETYAPTLAPSALAIGLFSLGAWLGLWQWIGDPVRLIALAVTLFFVIRSILRAMPLRRPTLSDARRRVEMDSGQAHRPLDVLDDRPALSADVWPAHQKKALGQAGLLKSAAPRPTLAPVDKYYLRVIVPVLLLVVAISMAGFSFERLRKAVTPTWQSAIRPSQISYEAWIDPPAYTGRPPIYFKDGADV-AVPAGSEFVARISGVKTAPRPRFSQGWRSRFLTPTRLGAKSFEVREIIN 786
            R +  AR+ LFWE Y P    +AL IGLF +G + GLW+ IGDP R IA    L+ ++R+   A     P++SDA+RRVE DSGQ HRPLDVLDD+PA+ A+ W AH ++A+ Q+  L S    PT+ P D YYLR  +PV++    I  +G + ERLR++V P WQS I P+++S+EAWIDPP YTGRPPIYFK G D+ ++P GSE+VAR++G KT  RP+   G +S +L  T+LG KSFE R  I+
Sbjct:   29 RYICTARIWLFWERYVPVFLLAALIIGLFLIGVFSGLWERIGDPWRGIAFIGALYVLVRAAYAAQKRPLPSISDAKRRVERDSGQRHRPLDVLDDKPAIGAEGWSAHYERAVSQSKSLNSPKLIPTVQPRDPYYLRYALPVMIAGAMIMGSGNNMERLRRSVLPVWQSGINPAEVSFEAWIDPPDYTGRPPIYFK-GQDIDSIPEGSEWVARMNGAKTPTRPQLRLGGKSHYLRLTKLGPKSFEARAAID 277          
BLAST of mRNA_P-canaliculata_contig97108.23794.1 vs. uniprot
Match: A0A2G2R2C6_9PROT (Uncharacterized protein n=3 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2R2C6_9PROT)

HSP 1 Score: 234 bits (597), Expect = 1.140e-67
Identity = 132/265 (49.81%), Postives = 165/265 (62.26%), Query Frame = 1
Query:   16 DTIIQSTQRLVSRARVRLFWETYAPTLAPSALAIGLFSLGAWLGLWQWIGDPVRLIALAVTLFFVIRSILRAMPLRRPTLSDARRRVEMDSGQAHRPLDVLDDRPALSAD--------VWPAHQKKALGQAGLLKSAAPRPTLAPVDKYYLRVIVPVLLLVVAISMAGFSFERLRKAVTPTWQSAIRPSQISYEAWIDPPAYTGRPPIYFKDGADVAVPAGSEFVARISGVKTAPRPRFSQGWRSRFLTPTRLGAKSFEVREIIN 786
            D + +   RL  RA   L WETYAPTLA   L I LF+  A  GLWQ IGDP RLI L++ ++ +++S L A     PT S ARRRVE+DSG +HRPLD L D PAL+           W  H   A  Q     +++ RPTLAP+DKY+LR+  P+LL++  +  AG ++ERLR ++TP W   +      YEAWIDPP YTGRPP YFK    +  P GSEFVARISGVKTAPR    +G R+R +T  RLG +SFE R IIN
Sbjct:   14 DILTKRATRLTKRAYRHLLWETYAPTLALGVLFILLFATAAAFGLWQRIGDPWRLIGLSIAVYCIVKSALSARQRHLPTQSQARRRVELDSGLSHRPLDTLVDTPALNDSNDDAPFNAAWQNHLAHAQVQIQRAGTSSLRPTLAPMDKYFLRIATPILLMLAFMVGAGDNYERLRASLTPGWIYGMSAKTAHYEAWIDPPQYTGRPPSYFKGQTSMDAPEGSEFVARISGVKTAPRLILREGNRTRRITAKRLGPQSFEARAIIN 278          
BLAST of mRNA_P-canaliculata_contig97108.23794.1 vs. uniprot
Match: A0A848V0S2_9PROT (DUF4175 family protein n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V0S2_9PROT)

HSP 1 Score: 226 bits (576), Expect = 9.210e-65
Identity = 126/262 (48.09%), Postives = 158/262 (60.31%), Query Frame = 1
Query:    1 MSENLDTIIQSTQRLVSRARVRLFWETYAPTLAPSALAIGLFSLGAWLGLWQWIGDPVRLIALAVTLFFVIRSILRAMPLRRPTLSDARRRVEMDSGQAHRPLDVLDDRPALSADVWPAHQKKALGQAGLLKSAAPRPTLAPVDKYYLRVIVPVLLLVVAISMAGFSFERLRKAVTPTWQSAIRPSQISYEAWIDPPAYTGRPPIYFKDGADVAVPAGSEFVARISGVKTAPRPRFSQGWRSRFLTPTRLGAKSFEVREIIN 786
            MS     +++  QRL   AR  L+WE Y+P  A +A  I LF +G++ GLWQ IGDP RLI L   +  + RSI RA  LRRP +S ARRRVE DS   HRPLD L DRPALS + WP H +KA      LK    RP L  VDKY+LR   P  L++  +  AG SFERLR ++TP W +      I++EAWIDPP YTGRPP+YFK    +  P GSE VARI G K   R +      ++ ++  R+G  SFEVR II+
Sbjct:    1 MSSRNAFLLKKAQRLTRSARALLYWEQYSPVYALAAFLIALFMIGSFSGLWQLIGDPWRLIVLIAAVVILGRSIWRARKLRRPDISAARRRVEEDSNVRHRPLDTLYDRPALSEEGWPEHYRKAEDVVDRLKRPRLRPALGKVDKYFLRFATPAALVLALMVGAGDSFERLRHSLTPGWVNGSLGDDITFEAWIDPPEYTGRPPVYFKKSNQLEAPQGSELVARIIGTKNPTRLKLRSENGTKHISLKRIGPDSFEVRAIID 262          
BLAST of mRNA_P-canaliculata_contig97108.23794.1 vs. uniprot
Match: A0A2G2J4R4_9PROT (Uncharacterized protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2J4R4_9PROT)

HSP 1 Score: 225 bits (573), Expect = 2.280e-64
Identity = 125/258 (48.45%), Postives = 158/258 (61.24%), Query Frame = 1
Query:   22 IIQSTQRLVSRARVRLFWETYAPTLAPSALAIGLFSLGAWLGLWQWIGDPVRLIALAVTLFFVIRSILRAMPLRRPTLSDARRRVEMDSGQAHRPLDVLDDRPALSADVWPAHQKKALGQAGLLKSAAP---RPTLAPVDKYYLRVIVPVLLLVVAISMAGFSFERLRKAVTPTWQSAIRPSQISYEAWIDPPAYTGRPPIYFKDGADVAVPAGSEFVARISGVKTAPRPRFSQGWRSRFLTPTRLGAKSFEVREIIN 786
            + +   RL  RA  +L WE YAP LA     + LF  GA +GLWQ IGDP R IAL + L F+ RS LR    RRPT S ARRRVE D+   HRP D + D  A+S+   PA Q        L+  AAP   RP LAP+DKY+LR  +P +L++ A+   G ++ER+R ++TP W S I    + YEAW+DPP YT RPP YFK    +  P GSEFVARISGVKTAPR     G R+R ++  RLG KSFE R +++
Sbjct:    5 LTKRADRLTRRAYGQLLWEIYAPVLALGVFCVLLFVAGASVGLWQRIGDPWRFIALGIVLVFLTRSALRVRTHRRPTRSQARRRVETDNNLNHRPFDTIRDSSAISSSDDPAWQNHLNAAKALVNQAAPSRLRPALAPIDKYFLRFALPCVLVLCAMVGGGDNYERIRASLTPGWISGISAKTVRYEAWVDPPEYTNRPPSYFKQSNTITAPEGSEFVARISGVKTAPRLIVRTGNRTRRISAKRLGPKSFEARIVLS 262          
BLAST of mRNA_P-canaliculata_contig97108.23794.1 vs. uniprot
Match: A0A2G2N2U8_9PROT (Uncharacterized protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2N2U8_9PROT)

HSP 1 Score: 224 bits (570), Expect = 6.910e-64
Identity = 131/267 (49.06%), Postives = 163/267 (61.05%), Query Frame = 1
Query:   10 NLDTIIQSTQRLVSRARVRLFWETYAPTLAPSALAIGLFSLGAWLGLWQWIGDPVRLIALAVTLFFVIRSILRAMPLRRPTLSDARRRVEMDSGQAHRPLDVLDDRPALSAD-------VWPAHQKKALGQAGLLKSAAPRPTLAPVDKYYLRVIVPVLLLVVAISMAGFSFERLRKAVTPTWQSAIRPSQISYEAWIDPPAYTGRPPIYFKDGADVAVPAGSEFVARISGVKTAPR--PRFSQGWRSRFLTPTRLGAKSFEVREII 783
            N   + +    L  RA   L WETY P LA + L + LF +    GLWQ+IGDP RLI L    FFV++S   A   +RPT S ARRRVE DSG +HRPLD + D PAL+ +        W  H K A  Q     +++ RP LAP+DKYYLR+ VPV+L++  +   G ++ERLR ++TP W S +      YEAWIDPP YT RPP YFK    + VP GSEFVARISGVKTAPR   R   G ++R +TP RLG +SFE R II
Sbjct:   12 NKSVLSKRAHSLTRRAYRHLLWETYVPVLALAVLFVLLFVVAGAAGLWQFIGDPWRLIGLVFAGFFVLKSAFAARRKQRPTGSQARRRVEHDSGLSHRPLDAVVDTPALAQENDPAKNQAWQNHXKXAREQIQRAGTSSLRPALAPIDKYYLRLAVPVMLILAFMVGFGDNYERLRASLTPGWISGVSAKSAHYEAWIDPPQYTARPPSYFKGQKSLQVPEGSEFVARISGVKTAPRLIVRRKNG-QTRRITPKRLGPQSFEARAII 277          
BLAST of mRNA_P-canaliculata_contig97108.23794.1 vs. uniprot
Match: A0A8J3CSB6_9PROT (Uncharacterized protein n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CSB6_9PROT)

HSP 1 Score: 217 bits (553), Expect = 1.730e-61
Identity = 116/249 (46.59%), Postives = 151/249 (60.64%), Query Frame = 1
Query:   40 RLVSRARVRLFWETYAPTLAPSALAIGLFSLGAWLGLWQWIGDPVRLIALAVTLFFVIRSILRAMPLRRPTLSDARRRVEMDSGQAHRPLDVLDDRPALSADVWPAHQKKALGQAGLLKSAAPRPTLAPVDKYYLRVIVPVLLLVVAISMAGFSFERLRKAVTPTWQSAIRPSQISYEAWIDPPAYTGRPPIYFKDGADVAVPAGSEFVARISGVKTAPRPRFSQGWRSRFLTPTRLGAKSFEVREIIN 786
            RL + AR RL WE YAP +A  ALA+ +  +  WLGLW+  GDP R+IAL VT+  +IR++ RA  +R PT SDARRR+E  +G AHRPLD LDD P LS  +WPAH   A   A  ++     P L+ +D+Y LR I P+ L +      G S ER+R  ++PT QS   P  +++EAW+DPP YTGRPP+Y +    +  P GS  V R SG    PRPR+      RFLT   LG  + EVR II+
Sbjct:   18 RLTTLARARLIWEGYAPIVALPALALSILLILTWLGLWEVAGDPFRIIALVVTVGLIIRAVRRARHIRWPTDSDARRRLENTAGLAHRPLDTLDDAPILSPTLWPAHVAHAQKDADTIRRVGRTPALSVIDRYGLRFITPIALGLALFLSWGLSMERVRHGLSPTVQSPTNPYSLTFEAWVDPPDYTGRPPLYAQGDGVIRAPVGSTLVVRASGASDLPRPRYIGAEGQRFLTVDALGQNNSEVRTIID 266          
BLAST of mRNA_P-canaliculata_contig97108.23794.1 vs. uniprot
Match: A0A7C3GWQ4_9GAMM (DUF4175 family protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C3GWQ4_9GAMM)

HSP 1 Score: 206 bits (525), Expect = 2.460e-61
Identity = 122/254 (48.03%), Postives = 155/254 (61.02%), Query Frame = 1
Query:   43 LVSRARVRLFWETYAPTLAPSALAIGLFSLGAWLGLWQWIGDPVRLIALAVTLFFVIRSILRAMPLRRPTLSDARRRVEMDSGQAHRPLDVLDDRPALS---ADVWPAHQKKALGQAGLLKSAAP---RPTLAPVDKYYLRVIVPVLLLVVAISMAGFSFERLRKAVTPTWQSAIRPSQISYEAWIDPPAYTGRPPIYFKDGADVAVPAGSEFVARISGVKTAPRPRFSQGWRSRFLTPTRLGAKSFEVREIIN 786
            LV RA   L++ETYAP LA   LAI LF   A  G+WQ IGDP R IAL  TL  + +S+L A   + P LS A+RRVE+D+   HRPLD + D+PA S     VW  H  K+      L++A P   RPTL  VDKYYLR + P LL++  +  AG ++ERLR A+TP W   I     ++EAWIDPP YT RPP YFK+   V  P GS FV R++G+KTAPR     G +++ +   RLG KSFE   I+N
Sbjct:   12 LVRRAHRHLWFETYAPVLAIGILAIVLFFTCAAFGIWQRIGDPWRYIALLATLVVLAKSLLGAQRQKPPNLSAAKRRVELDNALHHRPLDTIIDKPAFSNHDGAVWTTHLSKS---QKCLENATPTKLRPTLGEVDKYYLRFVAPALLVLAMMVGAGDNYERLRSALTPGWIYGISAKDTNFEAWIDPPEYTLRPPSYFKNSNRVNAPEGSRFVVRMTGIKTAPRLLIKDGLKTKRVKAKRLGPKSFEASVIVN 262          
BLAST of mRNA_P-canaliculata_contig97108.23794.1 vs. uniprot
Match: A0A2G2GJE6_9PROT (Uncharacterized protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GJE6_9PROT)

HSP 1 Score: 215 bits (547), Expect = 1.070e-60
Identity = 123/255 (48.24%), Postives = 154/255 (60.39%), Query Frame = 1
Query:   37 QRLVSRARVRLFWETYAPTLAPSALAIGLFSLGAWLGLWQWIGDPVRLIALAVTLFFVIRSILRAMPLRRPTLSDARRRVEMDSGQAHRPLDVLDDRPAL----SADV-WPAHQKKALGQAGLLKSAAPRPTLAPVDKYYLRVIVPVLLLVVAISMAGFSFERLRKAVTPTWQSAIRPSQISYEAWIDPPAYTGRPPIYFKDGADVAVPAGSEFVARISGVKTAPRPRFSQGWRSRFLTPTRLGAKSFEVREIIN 786
            +RL +RA  +L WE YAP LA     + LF +GA  GLWQ+IGDP R +ALA+TL      +L A    +P  S ARRRVE+D+   HRP D + D  AL    S D+ W  H   A  Q      +  RP LAP+DKYYLR  VP L++  A+   G ++ER+R ++TP W S I     +YEAWIDPP YT RPP YFK    +  P GSEFVARISGVK+APR    +  R+R + PTRLG KSFE R  I+
Sbjct:   10 ERLTARAYRQLLWECYAPVLALGVCLLLLFIVGASSGLWQFIGDPWRGVALAITLAVFTWCVLHARKRLKPNTSQARRRVELDNNFKHRPFDTITDSSALVSSGSDDIAWQHHLDVARAQVNQAAPSRLRPALAPMDKYYLRFAVPCLVVAAAMFGGGDNYERIRASLTPGWMSGISAKNAAYEAWIDPPEYTNRPPSYFKKSNTIHAPEGSEFVARISGVKSAPRLIIREKGRTRRIRPTRLGPKSFEARAYIS 264          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97108.23794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00167635FC1.170e-13577.19DUF4175 family protein n=1 Tax=Litorimonas cladoph... [more]
UPI00041A8EB11.930e-7351.32DUF4175 family protein n=1 Tax=Hellea balneolensis... [more]
A0A420WCY2_9PROT5.720e-7150.80Uncharacterized protein DUF4175 n=1 Tax=Litorimona... [more]
A0A2G2R2C6_9PROT1.140e-6749.81Uncharacterized protein n=3 Tax=Robiginitomaculum ... [more]
A0A848V0S2_9PROT9.210e-6548.09DUF4175 family protein n=1 Tax=Hellea sp. TaxID=27... [more]
A0A2G2J4R4_9PROT2.280e-6448.45Uncharacterized protein n=1 Tax=Robiginitomaculum ... [more]
A0A2G2N2U8_9PROT6.910e-6449.06Uncharacterized protein n=1 Tax=Robiginitomaculum ... [more]
A0A8J3CSB6_9PROT1.730e-6146.59Uncharacterized protein n=1 Tax=Algimonas arctica ... [more]
A0A7C3GWQ4_9GAMM2.460e-6148.03DUF4175 family protein (Fragment) n=1 Tax=Gammapro... [more]
A0A2G2GJE6_9PROT1.070e-6048.24Uncharacterized protein n=1 Tax=Robiginitomaculum ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97108contigP-canaliculata_contig97108:299..1087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score251.9
Seed ortholog evalue3.3e-64
Seed eggNOG ortholog1121948.AUAC01000004_gene185
EggNOG free text desc.Domain of unknown function (DUF4175)
EggNOG OGs1MWCT@1224,2TS61@28211,440VA@69657,COG0419@1,COG0419@2
COG Functional cat.L
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons1
Model size789
Cds size789
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817335.523444-CDS-P-canaliculata_contig97108:298..10871622817335.523444-CDS-P-canaliculata_contig97108:298..1087Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97108 299..1087 +
1693495230.675685-CDS-P-canaliculata_contig97108:298..10871693495230.675685-CDS-P-canaliculata_contig97108:298..1087Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97108 299..1087 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97108.23794.1prot_P-canaliculata_contig97108.23794.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97108 299..1087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97108.23794.1

>prot_P-canaliculata_contig97108.23794.1 ID=prot_P-canaliculata_contig97108.23794.1|Name=mRNA_P-canaliculata_contig97108.23794.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=263bp
MSENLDTIIQSTQRLVSRARVRLFWETYAPTLAPSALAIGLFSLGAWLGL
WQWIGDPVRLIALAVTLFFVIRSILRAMPLRRPTLSDARRRVEMDSGQAH
RPLDVLDDRPALSADVWPAHQKKALGQAGLLKSAAPRPTLAPVDKYYLRV
IVPVLLLVVAISMAGFSFERLRKAVTPTWQSAIRPSQISYEAWIDPPAYT
GRPPIYFKDGADVAVPAGSEFVARISGVKTAPRPRFSQGWRSRFLTPTRL
GAKSFEVREIIND
back to top

mRNA from alignment at P-canaliculata_contig97108:299..1087+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97108.23794.1 ID=mRNA_P-canaliculata_contig97108.23794.1|Name=mRNA_P-canaliculata_contig97108.23794.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=789bp|location=Sequence derived from alignment at P-canaliculata_contig97108:299..1087+ (Pelvetia canaliculata dioecious)
ATGTCCGAGAATCTCGACACAATTATTCAGTCTACGCAGCGCCTCGTTTC GCGTGCGCGTGTGCGCTTGTTCTGGGAAACCTACGCACCGACGCTTGCAC CCAGCGCCTTAGCCATTGGCCTCTTCAGTCTGGGCGCGTGGCTGGGCCTG TGGCAGTGGATTGGCGATCCGGTCAGACTGATTGCGCTTGCCGTCACGCT ATTTTTTGTTATCCGCTCGATCTTGCGCGCAATGCCTTTGCGGCGACCCA CATTATCCGATGCCCGCCGCCGCGTGGAAATGGATTCCGGACAAGCTCAT CGTCCTTTGGACGTGCTTGACGACCGCCCCGCCCTGTCTGCGGATGTTTG GCCTGCCCATCAAAAGAAGGCGCTGGGCCAAGCCGGGCTTTTAAAATCCG CCGCCCCTCGTCCGACCCTCGCGCCGGTCGATAAATATTATCTACGGGTC ATCGTGCCCGTCTTGCTTCTGGTCGTCGCGATTTCAATGGCCGGCTTCTC GTTTGAACGTTTGCGCAAAGCCGTCACGCCGACGTGGCAATCTGCTATAC GCCCGAGCCAGATTAGCTATGAAGCGTGGATCGACCCGCCCGCTTATACA GGCCGTCCGCCCATCTATTTCAAAGACGGCGCCGATGTCGCCGTGCCCGC GGGCAGTGAGTTTGTGGCCCGTATATCCGGCGTGAAGACGGCGCCCCGCC CGCGCTTTAGCCAAGGCTGGCGTTCCAGATTTTTGACGCCGACCCGTTTG GGCGCGAAGAGTTTCGAAGTCCGGGAGATTATAAACGAC
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig97108:299..1087+

>mRNA_P-canaliculata_contig97108.23794.1 ID=mRNA_P-canaliculata_contig97108.23794.1|Name=mRNA_P-canaliculata_contig97108.23794.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1578bp|location=Sequence derived from alignment at P-canaliculata_contig97108:299..1087+ (Pelvetia canaliculata dioecious)
ATGTCCGAGAATCTCGACACAATTATTCAGTCTACGCAGCGCCTCGTTTC
GCGTGCGCGTGTGCGCTTGTTCTGGGAAACCTACGCACCGACGCTTGCAC
CCAGCGCCTTAGCCATTGGCCTCTTCAGTCTGGGCGCGTGGCTGGGCCTG
TGGCAGTGGATTGGCGATCCGGTCAGACTGATTGCGCTTGCCGTCACGCT
ATTTTTTGTTATCCGCTCGATCTTGCGCGCAATGCCTTTGCGGCGACCCA
CATTATCCGATGCCCGCCGCCGCGTGGAAATGGATTCCGGACAAGCTCAT
CGTCCTTTGGACGTGCTTGACGACCGCCCCGCCCTGTCTGCGGATGTTTG
GCCTGCCCATCAAAAGAAGGCGCTGGGCCAAGCCGGGCTTTTAAAATCCG
CCGCCCCTCGTCCGACCCTCGCGCCGGTCGATAAATATTATCTACGGGTC
ATCGTGCCCGTCTTGCTTCTGGTCGTCGCGATTTCAATGGCCGGCTTCTC
GTTTGAACGTTTGCGCAAAGCCGTCACGCCGACGTGGCAATCTGCTATAC
GCCCGAGCCAGATTAGCTATGAAGCGTGGATCGACCCGCCCGCTTATACA
GGCCGTCCGCCCATCTATTTCAAAGACGGCGCCGATGTCGCCGTGCCCGC
GGGCAGTGAGTTTGTGGCCCGTATATCCGGCGTGAAGACGGCGCCCCGCC
CGCGCTTTAGCCAAGGCTGGCGTTCCAGATTTTTGACGCCGACCCGTTTG
GGCGCGAAGAGTTTCGAAGTCCGGGAGATTATAAACGACATGTCCGAGAA
TCTCGACACAATTATTCAGTCTACGCAGCGCCTCGTTTCGCGTGCGCGTG
TGCGCTTGTTCTGGGAAACCTACGCACCGACGCTTGCACCCAGCGCCTTA
GCCATTGGCCTCTTCAGTCTGGGCGCGTGGCTGGGCCTGTGGCAGTGGAT
TGGCGATCCGGTCAGACTGATTGCGCTTGCCGTCACGCTATTTTTTGTTA
TCCGCTCGATCTTGCGCGCAATGCCTTTGCGGCGACCCACATTATCCGAT
GCCCGCCGCCGCGTGGAAATGGATTCCGGACAAGCTCATCGTCCTTTGGA
CGTGCTTGACGACCGCCCCGCCCTGTCTGCGGATGTTTGGCCTGCCCATC
AAAAGAAGGCGCTGGGCCAAGCCGGGCTTTTAAAATCCGCCGCCCCTCGT
CCGACCCTCGCGCCGGTCGATAAATATTATCTACGGGTCATCGTGCCCGT
CTTGCTTCTGGTCGTCGCGATTTCAATGGCCGGCTTCTCGTTTGAACGTT
TGCGCAAAGCCGTCACGCCGACGTGGCAATCTGCTATACGCCCGAGCCAG
ATTAGCTATGAAGCGTGGATCGACCCGCCCGCTTATACAGGCCGTCCGCC
CATCTATTTCAAAGACGGCGCCGATGTCGCCGTGCCCGCGGGCAGTGAGT
TTGTGGCCCGTATATCCGGCGTGAAGACGGCGCCCCGCCCGCGCTTTAGC
CAAGGCTGGCGTTCCAGATTTTTGACGCCGACCCGTTTGGGCGCGAAGAG
TTTCGAAGTCCGGGAGATTATAAACGAC
back to top