mRNA_P-canaliculata_contig9708.23792.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig9708.23792.1 vs. uniprot
Match: A0A6H5JCH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH6_9PHAE) HSP 1 Score: 385 bits (989), Expect = 1.180e-124 Identity = 192/351 (54.70%), Postives = 239/351 (68.09%), Query Frame = 2
Query: 434 RSLQENLKSLRLDLSLGKHDPHSAGAPRREVHSLTSSALGAARKRPAAAR-----------------HSLYVRRKRPPSALCMPRHQRPQGCAPLLPI----ENQHAVVDHIVSQKMVRAELSDFKSDLPCVQNGTCPVPAFRCPKGHVWTSKGKPECFYCPVCADSRVTSLGGERRQKRDLDVMKELAEARGGLCISKTYRGMHGKIRFRCAEGHEWLSSPSNIAYKKTWCPICAGSTRSERKRLNVAEMHRTARQFGGEFLSKEYLGAAVKHEWRCHRGHRFWQAPNNVRRSEGGRRTATFCKKCTIIDKGIIRATLLGGLDPATAKRTEAELSSIGAMPTRRHFLPRK 1423
+SLQ+ L +RLD SL +P+ AGAP R + L S G + AAA +S Y RR+RP +A CMP++QRPQGC PLLP Q VVDH+ + LS++KSDLPCVQ GTCPVP FRC KGHVW G P CFYCP+CAD+R+T+ ++KRDL+ M+E+A +GG CI++ Y GM KI FRC +GHEWL+SPSN+ YK TWCP CA ERK+L +A+MH+TARQFGG FLS EY GAAVKHEWRC RGH FW PNNVRR+EGGRR ATFCK CT +D+ I++A +LGGLD AK T +L+++GAMPTRRHFL ++
Sbjct: 122 KSLQQRLDEMRLDFSLEDREPYVAGAPPR-IPPLPESPPGGTPSQAAAAAALAGSGTMPAKSGRQALYSNYRRRRRPLNASCMPKNQRPQGCGPLLPPIGTGGKQVVVVDHVAPELDKIRHLSEYKSDLPCVQTGTCPVPVFRCSKGHVWEPNGTPVCFYCPICADTRITT---RMKRKRDLEAMQEIARGKGGECIAEEYLGMDEKIAFRCGDGHEWLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGGVFLSPEYKGAAVKHEWRCKRGHTFWNTPNNVRRAEGGRRVATFCKICTSMDRRILKAAVLGGLDKDDAKSTLDQLNAVGAMPTRRHFLKKR 468
BLAST of mRNA_P-canaliculata_contig9708.23792.1 vs. uniprot
Match: D7FQ22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ22_ECTSI) HSP 1 Score: 365 bits (936), Expect = 3.320e-119 Identity = 169/284 (59.51%), Postives = 210/284 (73.94%), Query Frame = 2
Query: 584 HSLYVRRKRPPSALCMPRHQRPQGCAPLLPI----ENQHAVVDHIVSQKMVRAELSDFKSDLPCVQNGTCPVPAFRCPKGHVWTSKGKPECFYCPVCADSRVTSLGGERRQKRDLDVMKELAEARGGLCISKTYRGMHGKIRFRCAEGHEWLSSPSNIAYKKTWCPICAGSTRSERKRLNVAEMHRTARQFGGEFLSKEYLGAAVKHEWRCHRGHRFWQAPNNVRRSEGGRRTATFCKKCTIIDKGIIRATLLGGLDPATAKRTEAELSSIGAMPTRRHFLPRK 1423
+S Y RR+RP +A CMP++QRPQGC PLLP Q VVDH+ + LS++KSDLPCVQ GTCPVP FRC KGHVW G P CFYCP+CAD+R+T+ ++KRDL+ M+E+A +GG CI++ Y G+ KI FRC +GHEWL+SPSN+ YK TWCP CA ERK+L +A+MH+TARQFGG FLS EY GAAVKHEWRC RGH FW PNNVRR+EGGRR ATFCK CT +D+ I++A +LGGLD AK T +L+++GAMP RRHFL ++
Sbjct: 11 YSNYRRRRRPLNASCMPKNQRPQGCGPLLPPIGTGGKQVVVVDHVAPELDKIRHLSEYKSDLPCVQTGTCPVPVFRCSKGHVWEPNGTPVCFYCPICADTRITT---RMKRKRDLEAMQEIARGKGGECIAEEYLGIDEKIAFRCGDGHEWLTSPSNLVYKNTWCPKCAALRSVERKKLTLADMHQTARQFGGVFLSPEYKGAAVKHEWRCKRGHTFWNTPNNVRRAEGGRRVATFCKICTSMDRRILKAAVLGGLDKDDAKSTLDQLNAVGAMPIRRHFLKKR 291
BLAST of mRNA_P-canaliculata_contig9708.23792.1 vs. uniprot
Match: A0A836C7R5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7R5_9STRA) HSP 1 Score: 209 bits (532), Expect = 3.560e-59 Identity = 107/239 (44.77%), Postives = 136/239 (56.90%), Query Frame = 2
Query: 614 PSALCMPRHQRPQGCAPLLPIENQHAVVDHIVSQKMVRAELSDFKSDLPCVQNGTCPVPAFRCPKGHVWTS-KGKPECFYCPVCADSRVTSLGGERRQKRDLDVMKELAEARGGLCISKTYRGMHGKIRFRCAEGHEWLSSPSNIAYKKTWCPICAGSTRSERKRLNVAEMHRTARQFGGEFLSKEYLGAAVKHEWRCHRGHRFWQAPNNVRRSEGGRRTATFCKKCTIIDKGIIRATL 1327
PSALC P RP GCAPLL QH H + + + LPCV++G CP F CP+GH W + G P CF+CP C+ + V G R++ L + ELA ARGG C+S YRG+ F+CA+GH W + +N+ Y +WCP CA R+ RL+ A+MH TA QFGGEFLS Y GA KH WRC GH F Q PN +RR GG+R FC +C+ + I TL
Sbjct: 70 PSALCRPTGTRPLGCAPLL----QH----HFPPPRTCTDDA--MMTPLPCVESGVCPFVRFECPRGHTWKAVAGAPACFFCPQCSAAEVR--GRRARRRLSLASLAELAAARGGECVSAEYRGLMEPHDFKCAKGHVWSALANNVVYCASWCPTCAKGQRAASNRLSAADMHATAAQFGGEFLSPTYHGADKKHLWRCSAGHTFKQTPNAIRRRVGGKRRPAFCPECSRAQRAISAVTL 296
BLAST of mRNA_P-canaliculata_contig9708.23792.1 vs. uniprot
Match: A0A1D2RB87_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Altiarchaeales archaeon WOR_SM1_SCG TaxID=1849261 RepID=A0A1D2RB87_9ARCH) HSP 1 Score: 107 bits (268), Expect = 2.340e-23 Identity = 59/174 (33.91%), Postives = 99/174 (56.90%), Query Frame = 2
Query: 794 FRCPKGHVWTSK------GKPECFYCPVCAD-SRVTSLGGERRQKRDLDVMKELAEARGGLCISKTYRGMHGKIRFRCAEGHEWLSSPSNIAYKKTWCPICAGSTRSERKRLNVAEMHRTARQFGGEFLSKEYLGAAVKHEWRCHRGHRFWQA-PNNVRRSEGGRRTATFCKKC 1291
++C GHVW +K G+ +CP CA +R T ++ M+E+AE+RGG C+S+ Y K++++C EGH W ++P+++ + TWCP C G ++L +A+M + A GG+ LS+EY+ + K +W+C +GH W+A P++V+R T+C C
Sbjct: 34 WQCKAGHVWEAKPTNIVNGR----WCPHCAGVARFT-----------IEYMQEIAESRGGKCLSEKYGNTFTKLKWQCKEGHSWEATPNSVK-RGTWCPYCCGH-----EKLTIAQMQKIAESRGGKCLSEEYVNSLTKLKWQCKKGH-VWEAKPSSVKRG-------TWCPGC 178
BLAST of mRNA_P-canaliculata_contig9708.23792.1 vs. uniprot
Match: A0A7S4QL34_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QL34_9DINO) HSP 1 Score: 110 bits (276), Expect = 2.780e-23 Identity = 62/179 (34.64%), Postives = 91/179 (50.84%), Query Frame = 2
Query: 767 QNGTCPVPAFRCPKGHVWTSK---GKPECFYCPVCADSRVTSLGGERRQKRDLDVMKELAEARGGLCISKTYRGMHGKIRFRCAEGHEWLSSPSNIAYKKTWCPICAGSTRSERKRLNVAEMHRTARQFGGEFLSKEYLGAAVKHEWRCHRGHRFWQAPNNVRRSEGGRRTATFCKKCT 1294
QN + P+ +RC +GH W + K +CP CA R + +++ +E A ARGG+C+S Y H + +RCAEGHEW + S++ ++KTWCP CAG+ R L++ + R A GG LS YL WRC GH W A +S G ++C +C+
Sbjct: 22 QNSSAPL-RWRCAEGHDWRASLQNVKNGGSWCPRCAG---------RGWRLTIEIARETATARGGMCLSTHYEAAHKPLHWRCAEGHEWHAGLSSVRHQKTWCPRCAGNAR-----LSIDDARRIAEAHGGSCLSTHYLNRRSHLRWRCAEGHE-WSASMMGVKSAG-----SWCPRCS 179
BLAST of mRNA_P-canaliculata_contig9708.23792.1 vs. uniprot
Match: A0A1E4ZPU9_9BACT (Uncharacterized protein (Fragment) n=1 Tax=PVC group bacterium (ex Bugula neritina AB1) TaxID=1868283 RepID=A0A1E4ZPU9_9BACT) HSP 1 Score: 115 bits (287), Expect = 3.020e-23 Identity = 57/170 (33.53%), Postives = 95/170 (55.88%), Query Frame = 2
Query: 797 RCPKGHVWTSKGKPECF----YCPVCADSRVTSLGGERRQKRDLDVMKELAEARGGLCISKTYRGMHGKIRFRCAEGHEWLSSPSNIAYKKTWCPICAGSTRSERKRLNVAEMHRTARQFGGEFLSKEYLGAAVKHEWRCHRGHRFWQAPNNVRRSEGGRRTATFCKKCT 1294
+C +GH+W+ + + F +C C QK + M ELAEA+GG C+S Y H K++++C EGH+W +SP+ I + +WCP C + ++++R ++ E+H+ A GG+FLS EY+ KHEW C +GH + P++++R T+C C+
Sbjct: 65 QCKEGHLWSIRY--DAFIRGSWCRKCYIES---------QKLTIGHMHELAEAKGGKCLSTNYVNAHTKLKWKCKEGHQWETSPNKIK-RGSWCPSCGRKSSNDKRRGSLKELHKLAESRGGKFLSTEYINVDTKHEWICKQGHVWSARPSSIKRG-------TWCPTCS 215
BLAST of mRNA_P-canaliculata_contig9708.23792.1 vs. uniprot
Match: A0A7S4V335_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4V335_9DINO) HSP 1 Score: 110 bits (276), Expect = 5.200e-23 Identity = 66/196 (33.67%), Postives = 97/196 (49.49%), Query Frame = 2
Query: 794 FRCPKGHVWTS---KGKPECFYCPVCA--DSRVTSLGGERRQKRDLDVMKELAEARGGLCISKTYRGMHGKIRFRCAEGHEWLSSPSNIAYKKTWCPICAGSTRSERKRLNVAEMHRTARQFGGEFLSKEYLGAAVKHEWRCHRGHRFWQAPNNVRRSEGGRRTATFCKKCT-----IIDKGIIRATLLGGLDPAT 1351
+RC +GH W + + +CP CA SR+T +++ ++ A+ARGGLC+S Y H ++ +RCAEGH W +S ++I +TWCP CAG+ R L++ R A+ GG LS YL A WRC GH W A +S G T+C C+ + +GI+ A G P +
Sbjct: 98 WRCAEGHEWFAALHSIRSHQTWCPACAAEGSRLT-----------IEIARDAAQARGGLCLSSQYESSHTRLHWRCAEGHAWHASLNSIRSHETWCPYCAGTAR-----LSIDVAQRVAKARGGSCLSTHYLNARGHLRWRCAEGHE-WSASMTGVKSSG-----TWCPFCSGRKRETVIRGILEAIFAGHAFPTS 271
BLAST of mRNA_P-canaliculata_contig9708.23792.1 vs. uniprot
Match: A0A7S4QLW3_9DINO (Hypothetical protein n=3 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QLW3_9DINO) HSP 1 Score: 110 bits (276), Expect = 2.260e-22 Identity = 66/196 (33.67%), Postives = 97/196 (49.49%), Query Frame = 2
Query: 794 FRCPKGHVWTS---KGKPECFYCPVCA--DSRVTSLGGERRQKRDLDVMKELAEARGGLCISKTYRGMHGKIRFRCAEGHEWLSSPSNIAYKKTWCPICAGSTRSERKRLNVAEMHRTARQFGGEFLSKEYLGAAVKHEWRCHRGHRFWQAPNNVRRSEGGRRTATFCKKCT-----IIDKGIIRATLLGGLDPAT 1351
+RC +GH W + + +CP CA SR+T +++ ++ A+ARGGLC+S Y H ++ +RCAEGH W +S ++I +TWCP CAG+ R L++ R A+ GG LS YL A WRC GH W A +S G T+C C+ + +GI+ A G P +
Sbjct: 175 WRCAEGHEWFAALHSIRSHQTWCPACAAEGSRLT-----------IEIARDAAQARGGLCLSSQYESSHTRLHWRCAEGHAWHASLNSIRSHETWCPYCAGTAR-----LSIDVAQRVAKARGGSCLSTHYLNARGHLRWRCAEGHE-WSASMTGVKSSG-----TWCPFCSGRKRETVIRGILEAIFAGHAFPTS 348
BLAST of mRNA_P-canaliculata_contig9708.23792.1 vs. uniprot
Match: A0A6S7A7B5_9BURK (Uncharacterized protein n=2 Tax=Achromobacter kerstersii TaxID=1353890 RepID=A0A6S7A7B5_9BURK) HSP 1 Score: 108 bits (271), Expect = 3.370e-22 Identity = 59/149 (39.60%), Postives = 77/149 (51.68%), Query Frame = 2
Query: 794 FRCPKGHVWTSKGKPEC--FYCPVCADSRVTSLGGERRQKRDLDVMKELAEARGGLCISKTYRGMHGKIRFRCAEGHEWLSSPSNIAYKKTWCPICAGSTRSERKRLNVAEMHRTARQFGGEFLSKEYLGAAVKHEWRCHRGHRFWQAP 1234
FRC GH W + G +CP CA R+ + G R L+ ++ A RGG C+S Y G+ + RFRC EGHEWL++ I +WC +CA KRL + H AR+ GG+ LS Y+ K W CHRGH W AP
Sbjct: 167 FRCGAGHEWNAPGADVLRRTWCPECA--RLRKVEGYRHPD-GLERLQRKAAERGGACLSDAYHGLGVRYRFRCTEGHEWLTTGGKILLG-SWCGVCANVN----KRLGIEAAHHAARERGGQCLSSSYVNTTKKLHWLCHRGHD-WYAP 306
BLAST of mRNA_P-canaliculata_contig9708.23792.1 vs. uniprot
Match: A0A2V5UAS9_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5UAS9_9BACT) HSP 1 Score: 107 bits (268), Expect = 4.170e-22 Identity = 56/155 (36.13%), Postives = 85/155 (54.84%), Query Frame = 2
Query: 794 FRCPKGHVWTS--KGKPECFYCPVCADSRVTSLGGERRQKRDLDVMKELAEARGGLCISKTYRGMHGKIRFRCAEGHEWLSSPSNIAYKKTWCPICAGSTRSERKRLNVAEMHRTARQFGGEFLSKEYLGAAVKHEWRCHRGHRFWQA-PNNVRR 1249
+RC +GH W + +CP+C D R ++ ++ M+ LAEA+GG+C+S Y + ++R+RCAEGHEW S S + WCP C + L++ E+ +TA+ GGE L+ YL K WRC +GH W+A N++RR
Sbjct: 152 WRCTEGHEWEAVPSSVRRGAWCPICGDKRAAI-----KRAYTIEKMRTLAEAKGGVCLSANYSNVKSRLRWRCAEGHEWESQAS-VIIGGHWCPKCEQFRLGRKYALSLEEIQKTAKGRGGECLADNYLNTREKLIWRCAKGH-LWRANTNSIRR 299 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9708.23792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9708.23792.1 >prot_P-canaliculata_contig9708.23792.1 ID=prot_P-canaliculata_contig9708.23792.1|Name=mRNA_P-canaliculata_contig9708.23792.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=464bp MLRQSGGLPDEHMSLIASAFVILGHQSHQRLSSSASASFIIFPQPIRAQTback to top mRNA from alignment at P-canaliculata_contig9708:4386..11433- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9708.23792.1 ID=mRNA_P-canaliculata_contig9708.23792.1|Name=mRNA_P-canaliculata_contig9708.23792.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=7048bp|location=Sequence derived from alignment at P-canaliculata_contig9708:4386..11433- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9708:4386..11433- >mRNA_P-canaliculata_contig9708.23792.1 ID=mRNA_P-canaliculata_contig9708.23792.1|Name=mRNA_P-canaliculata_contig9708.23792.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2784bp|location=Sequence derived from alignment at P-canaliculata_contig9708:4386..11433- (Pelvetia canaliculata dioecious)back to top |