mRNA_P-canaliculata_contig97.23768.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97.23768.1
Unique NamemRNA_P-canaliculata_contig97.23768.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig97.23768.1 vs. uniprot
Match: R1GRS4_BOTPV (Putative mitochondrial ribosomal protein subunit l23 protein n=1 Tax=Botryosphaeria parva (strain UCR-NP2) TaxID=1287680 RepID=R1GRS4_BOTPV)

HSP 1 Score: 75.9 bits (185), Expect = 3.670e-15
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 3
Query:  138 GHKAIYLPSFSITLLRSAWLPPTYARFGVPLWFNKLDLRDYLQHVYDVKVHGV 296
            G KA+YLP F++TLLR+ +LPPT+A+F VPL FNKLDLRDYL H Y V+   +
Sbjct:   12 GRKAVYLPDFALTLLRTPFLPPTFAKFLVPLHFNKLDLRDYLWHAYGVRCTNI 64          
BLAST of mRNA_P-canaliculata_contig97.23768.1 vs. uniprot
Match: A0A6A6PUP7_9PEZI (Uncharacterized protein n=1 Tax=Neohortaea acidophila TaxID=245834 RepID=A0A6A6PUP7_9PEZI)

HSP 1 Score: 75.1 bits (183), Expect = 9.160e-15
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 3
Query:  129 WKPGHKAIYLPSFSITLLRSAWLPPTYARFGVPLWFNKLDLRDYLQHVYDVKVHGV 296
            +K G K ++LP+F IT LR+  LP  YARF VPLWF+KLDLRDYL H Y+V++  V
Sbjct:    5 FKVGKKELFLPNFIITFLRNQTLPANYARFEVPLWFSKLDLRDYLYHAYNVRIFSV 60          
BLAST of mRNA_P-canaliculata_contig97.23768.1 vs. uniprot
Match: A0A8E2EMQ1_9PEZI (Uncharacterized protein n=1 Tax=Glonium stellatum TaxID=574774 RepID=A0A8E2EMQ1_9PEZI)

HSP 1 Score: 73.6 bits (179), Expect = 3.600e-14
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 3
Query:  105 PPTMSNFRWKPGHKAIYLPSFSITLLRSAWLPPTYARFGVPLWFNKLDLRDYLQHVYDVK 284
            PP  S  ++  G K IYLP F ITLL +  LPPT+A+F VPL FNKLDLRDYL HVY+VK
Sbjct:    2 PPISSLIKF--GKKEIYLPKFIITLLHTPQLPPTHAKFLVPLNFNKLDLRDYLYHVYNVK 59          
BLAST of mRNA_P-canaliculata_contig97.23768.1 vs. uniprot
Match: UPI000CE240B3 (54S ribosomal protein L23, mitochondrial-like n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE240B3)

HSP 1 Score: 73.2 bits (178), Expect = 5.480e-14
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 3
Query:  138 GHKAIYLPSFSITLLRSAWLPPTYARFGVPLWFNKLDLRDYLQHVYDVKVHGV 296
            G K ++LPSF+I L RSA L P YA F VPLWF+KLDLRDYL H Y+V+ H +
Sbjct:   15 GLKEVHLPSFTINLRRSAKLSPKYALFEVPLWFSKLDLRDYLYHGYNVRTHSI 67          
BLAST of mRNA_P-canaliculata_contig97.23768.1 vs. uniprot
Match: A0A8H4N437_9PEZI (Lipase GDSL n=1 Tax=Botryosphaeria dothidea TaxID=55169 RepID=A0A8H4N437_9PEZI)

HSP 1 Score: 72.4 bits (176), Expect = 7.900e-14
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 3
Query:  138 GHKAIYLPSFSITLLRSAWLPPTYARFGVPLWFNKLDLRDYLQHVYDVKVHGV 296
            G K +YLP F++TLLR+ +LPPT+A+F VPL  NKLDLRDYL H Y +K   V
Sbjct:   12 GKKPVYLPDFTLTLLRTPFLPPTFAKFLVPLHLNKLDLRDYLWHAYGIKCTNV 64          
BLAST of mRNA_P-canaliculata_contig97.23768.1 vs. uniprot
Match: A0A5N5DHL2_9PEZI (54S ribosomal protein L41 n=1 Tax=Lasiodiplodia theobromae TaxID=45133 RepID=A0A5N5DHL2_9PEZI)

HSP 1 Score: 72.0 bits (175), Expect = 1.160e-13
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 3
Query:  138 GHKAIYLPSFSITLLRSAWLPPTYARFGVPLWFNKLDLRDYLQHVYDVKVHGV 296
            G K +YLP F++TLLR+ +LPPT+A+F VPL  NKLD+RDYL H Y VK   +
Sbjct:   12 GQKPVYLPDFTLTLLRTPFLPPTFAKFIVPLHLNKLDMRDYLWHAYGVKCANI 64          
BLAST of mRNA_P-canaliculata_contig97.23768.1 vs. uniprot
Match: A0A5J5EZJ3_9PEZI (Ribosomal protein L23-domain-containing protein n=1 Tax=Sphaerosporella brunnea TaxID=1250544 RepID=A0A5J5EZJ3_9PEZI)

HSP 1 Score: 71.6 bits (174), Expect = 1.420e-13
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 3
Query:  138 GHKAIYLPSFSITLLRSAWLPPTYARFGVPLWFNKLDLRDYLQHVYDVKVHGV 296
            G K ++LP F+I+LLR+  LPP +A+F VPL  NKLDLRDYL+H YDV+V  V
Sbjct:    5 GSKPVFLPKFTISLLRTPHLPPNFAQFAVPLNINKLDLRDYLKHAYDVEVLSV 57          
BLAST of mRNA_P-canaliculata_contig97.23768.1 vs. uniprot
Match: K2S2T4_MACPH (Lipase GDSL n=1 Tax=Macrophomina phaseolina (strain MS6) TaxID=1126212 RepID=K2S2T4_MACPH)

HSP 1 Score: 71.6 bits (174), Expect = 1.600e-13
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 3
Query:  138 GHKAIYLPSFSITLLRSAWLPPTYARFGVPLWFNKLDLRDYLQHVYDVKVHGV 296
            G K +YLP F++TLLR+ +LPPT+A+F VPL  NKLD+RDYL H Y +K   V
Sbjct:   12 GKKPVYLPDFTLTLLRTPFLPPTFAKFLVPLHLNKLDMRDYLWHAYGIKCTNV 64          
BLAST of mRNA_P-canaliculata_contig97.23768.1 vs. uniprot
Match: A0A165H863_XYLHT (Uncharacterized protein n=1 Tax=Xylona heveae (strain CBS 132557 / TC161) TaxID=1328760 RepID=A0A165H863_XYLHT)

HSP 1 Score: 71.6 bits (174), Expect = 2.540e-13
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 3
Query:  108 PTMSNFRWKPGHKAIYLPSFSITLLRSAWLPPTYARFGVPLWFNKLDLRDYLQHVYDVKVHGV 296
            P ++   +  G K +YLP+F++TLLR+ +LPP YA F VPL  NKLD+RDYL H Y VKV  V
Sbjct:    6 PALAARHFNLGGKEVYLPNFTLTLLRTPFLPPNYASFIVPLNLNKLDIRDYLFHAYGVKVVSV 68          
BLAST of mRNA_P-canaliculata_contig97.23768.1 vs. uniprot
Match: A0A8A3PHC2_9HELO (Uncharacterized protein n=1 Tax=Monilinia vaccinii-corymbosi TaxID=61207 RepID=A0A8A3PHC2_9HELO)

HSP 1 Score: 70.5 bits (171), Expect = 7.410e-13
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 3
Query:  132 KPGHKAIYLPSFSITLLRSAWLPPTYARFGVPLWFNKLDLRDYLQHVYDVKVHGV 296
            K G K IYLP+F+ITLLR+  LPP++A F VPL  NKLDLRDYL + Y ++V GV
Sbjct:   13 KMGRKQIYLPNFTITLLRTPNLPPSFASFIVPLNLNKLDLRDYLWNAYGIEVRGV 67          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97.23768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R1GRS4_BOTPV3.670e-1562.26Putative mitochondrial ribosomal protein subunit l... [more]
A0A6A6PUP7_9PEZI9.160e-1558.93Uncharacterized protein n=1 Tax=Neohortaea acidoph... [more]
A0A8E2EMQ1_9PEZI3.600e-1463.33Uncharacterized protein n=1 Tax=Glonium stellatum ... [more]
UPI000CE240B35.480e-1462.2654S ribosomal protein L23, mitochondrial-like n=1 ... [more]
A0A8H4N437_9PEZI7.900e-1460.38Lipase GDSL n=1 Tax=Botryosphaeria dothidea TaxID=... [more]
A0A5N5DHL2_9PEZI1.160e-1358.4954S ribosomal protein L41 n=1 Tax=Lasiodiplodia th... [more]
A0A5J5EZJ3_9PEZI1.420e-1360.38Ribosomal protein L23-domain-containing protein n=... [more]
K2S2T4_MACPH1.600e-1358.49Lipase GDSL n=1 Tax=Macrophomina phaseolina (strai... [more]
A0A165H863_XYLHT2.540e-1353.97Uncharacterized protein n=1 Tax=Xylona heveae (str... [more]
A0A8A3PHC2_9HELO7.410e-1361.82Uncharacterized protein n=1 Tax=Monilinia vaccinii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97contigP-canaliculata_contig97:42918..43301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size298
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817331.2990425-CDS-P-canaliculata_contig97:42917..430741622817331.2990425-CDS-P-canaliculata_contig97:42917..43074Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97 42918..43074 +
1693495228.6456091-CDS-P-canaliculata_contig97:42917..430741693495228.6456091-CDS-P-canaliculata_contig97:42917..43074Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97 42918..43074 +
1622817331.3178744-CDS-P-canaliculata_contig97:43161..433011622817331.3178744-CDS-P-canaliculata_contig97:43161..43301Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97 43162..43301 +
1693495228.6558132-CDS-P-canaliculata_contig97:43161..433011693495228.6558132-CDS-P-canaliculata_contig97:43161..43301Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97 43162..43301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97.23768.1prot_P-canaliculata_contig97.23768.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97 42918..43301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97.23768.1

>prot_P-canaliculata_contig97.23768.1 ID=prot_P-canaliculata_contig97.23768.1|Name=mRNA_P-canaliculata_contig97.23768.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=99bp
SDHPYILQTHGHPIRPPLLSKTHESNRETDRDVPPPQPCPTSAGNLDTRP
STYPVSPSRCCARRGCRRRTRASECRCGSTSWTCATTCSTCTTSRCTG*
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mRNA from alignment at P-canaliculata_contig97:42918..43301+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97.23768.1 ID=mRNA_P-canaliculata_contig97.23768.1|Name=mRNA_P-canaliculata_contig97.23768.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=384bp|location=Sequence derived from alignment at P-canaliculata_contig97:42918..43301+ (Pelvetia canaliculata dioecious)
TCGGATCATCCCTACATCCTCCAAACGCACGGCCATCCCATCCGCCCACC GCTACTTTCCAAAACGCACGAATCCAACCGTGAGACCGACCGCGACGTTC CTCCCCCCCAACCATGTCCAACTTCCGCTGGAAACCTGGACACAAGGCCA TCTACCTGTGCGTGCTTCCTCCTCCCCATCCTGCCCGCGATGGCCTCCCA CGTAGTACCCCCCACAACTCATGCGTGCCGTGCGGCGACTGCAGACCCAG TTTCTCCATCACGCTGCTGCGCTCGGCGTGGCTGCCGCCGACGTACGCGC GCTTCGGAGTGCCGCTGTGGTTCAACAAGCTGGACCTGCGCGACTACCTG CAGCACGTGTACGACGTCAAGGTGCACGGGGTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig97:42918..43301+

>mRNA_P-canaliculata_contig97.23768.1 ID=mRNA_P-canaliculata_contig97.23768.1|Name=mRNA_P-canaliculata_contig97.23768.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at P-canaliculata_contig97:42918..43301+ (Pelvetia canaliculata dioecious)
TCGGATCATCCCTACATCCTCCAAACGCACGGCCATCCCATCCGCCCACC
GCTACTTTCCAAAACGCACGAATCCAACCGTGAGACCGACCGCGACGTTC
CTCCCCCCCAACCATGTCCAACTTCCGCTGGAAACCTGGACACAAGGCCA
TCTACCTTCGGATCATCCCTACATCCTCCAAACGCACGGCCATCCCATCC
GCCCACCGCTACTTTCCAAAACGCACGAATCCAACCGTGAGACCGACCGC
GACGTTCCTCCCCCCCAACCATGTCCAACTTCCGCTGGAAACCTGGACAC
AAGGCCATCTACCTACCCAGTTTCTCCATCACGCTGCTGCGCTCGGCGTG
GCTGCCGCCGACGTACGCGCGCTTCGGAGTGCCGCTGTGGTTCAACAAGC
TGGACCTGCGCGACTACCTGCAGCACGTGTACGACGTCAAGGTGCACGGG
GTGAACCCAGTTTCTCCATCACGCTGCTGCGCTCGGCGTGGCTGCCGCCG
ACGTACGCGCGCTTCGGAGTGCCGCTGTGGTTCAACAAGCTGGACCTGCG
CGACTACCTGCAGCACGTGTACGACGTCAAGGTGCACGGGGTGA
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