mRNA_P-canaliculata_contig97.23767.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig97.23767.1
Unique NamemRNA_P-canaliculata_contig97.23767.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig97.23767.1 vs. uniprot
Match: A0A6A6CGZ5_9PEZI (DUF202 domain-containing protein n=1 Tax=Zasmidium cellare ATCC 36951 TaxID=1080233 RepID=A0A6A6CGZ5_9PEZI)

HSP 1 Score: 131 bits (329), Expect = 2.570e-36
Identity = 62/86 (72.09%), Postives = 75/86 (87.21%), Query Frame = 2 
Query:    2 VAILISFHLNDEPTATERHVALPFGVLFWLLGCSCLAAGLHNYIKTVNGYATRRALVQSGIGTQVVFTIVASAIIAACVLFLSTNA 259
            +AILISFHL  +P+  ER VALPFG++FW+L  +CL +GLHNYIKTVN Y+ R+ALVQ+G+GTQVVFT+VA AIIAACVLFLSTNA
Sbjct:   91 IAILISFHLKHQPSELERKVALPFGIIFWVLALACLVSGLHNYIKTVNRYSRRQALVQTGVGTQVVFTVVACAIIAACVLFLSTNA 176
[Close]
BLAST of mRNA_P-canaliculata_contig97.23767.1 vs. uniprot
Match: A0A4U0UDV4_9PEZI (DUF202 domain-containing protein n=1 Tax=Salinomyces thailandica TaxID=706561 RepID=A0A4U0UDV4_9PEZI)

HSP 1 Score: 129 bits (325), Expect = 9.530e-36
Identity = 63/89 (70.79%), Postives = 76/89 (85.39%), Query Frame = 2 
Query:    2 VAILISFHLNDEPTATERHVALPFGVLFWLLGCSCLAAGLHNYIKTVNGYATRRALVQSGIGTQVVFTIVASAIIAACVLFLSTNATTR 268
            VAILISFHL   P++ E+ VALP G++FW+L  +CL +GL+NYI TVN Y+ R+ALVQSG+GTQVVFT+VASAIIAACVLFLSTN TTR
Sbjct:   89 VAILISFHLKHAPSSMEKRVALPLGIIFWVLSLACLVSGLNNYIMTVNRYSRRQALVQSGVGTQVVFTVVASAIIAACVLFLSTNVTTR 177
[Close]
BLAST of mRNA_P-canaliculata_contig97.23767.1 vs. uniprot
Match: A0A6A6PTZ4_9PEZI (DUF202 domain-containing protein n=1 Tax=Neohortaea acidophila TaxID=245834 RepID=A0A6A6PTZ4_9PEZI)

HSP 1 Score: 129 bits (325), Expect = 9.800e-36
Identity = 62/86 (72.09%), Postives = 74/86 (86.05%), Query Frame = 2 
Query:    2 VAILISFHLNDEPTATERHVALPFGVLFWLLGCSCLAAGLHNYIKTVNGYATRRALVQSGIGTQVVFTIVASAIIAACVLFLSTNA 259
            VAILISFHL  EPT  ER VALPFG+LFWLL  +CL +GL NYIKTVNGY+ R+ALVQSG+GTQ+VFT+V+ AIIAAC+LFL+T +
Sbjct:   90 VAILISFHLKHEPTPLERRVALPFGLLFWLLAFACLVSGLFNYIKTVNGYSRRQALVQSGVGTQIVFTVVSCAIIAACILFLATKS 175
[Close]
BLAST of mRNA_P-canaliculata_contig97.23767.1 vs. uniprot
Match: M2MZ28_BAUPA (DUF202 domain-containing protein n=1 Tax=Baudoinia panamericana (strain UAMH 10762) TaxID=717646 RepID=M2MZ28_BAUPA)

HSP 1 Score: 129 bits (323), Expect = 1.910e-35
Identity = 63/89 (70.79%), Postives = 77/89 (86.52%), Query Frame = 2 
Query:    2 VAILISFHLNDEPTATERHVALPFGVLFWLLGCSCLAAGLHNYIKTVNGYATRRALVQSGIGTQVVFTIVASAIIAACVLFLSTNATTR 268
            VAILISFHL   PT  ER VALPFGV+FWLL  +CLA+G+ NYIKTV+ Y+ R+ALVQSG GTQ+VFT+VA+AI+AAC+LFLSTNA+T+
Sbjct:   89 VAILISFHLKHTPTPIERRVALPFGVVFWLLALACLASGVTNYIKTVSRYSRRQALVQSGAGTQLVFTVVAAAIVAACILFLSTNASTK 177
[Close]
BLAST of mRNA_P-canaliculata_contig97.23767.1 vs. uniprot
Match: UPI0004E9CE1C (uncharacterized protein n=1 Tax=Passalora fulva TaxID=5499 RepID=UPI0004E9CE1C)

HSP 1 Score: 126 bits (317), Expect = 2.110e-34
Identity = 62/89 (69.66%), Postives = 74/89 (83.15%), Query Frame = 2 
Query:    2 VAILISFHLNDEPTATERHVALPFGVLFWLLGCSCLAAGLHNYIKTVNGYATRRALVQSGIGTQVVFTIVASAIIAACVLFLSTNATTR 268
            +AILISFHL  +PTA ER VALPFG++FWLL  +CL +GL NYIKTVN Y+ R+ALVQSG GTQVVFT+VA+AI+AACVL LST   +R
Sbjct:   98 IAILISFHLKHQPTALERRVALPFGIIFWLLALACLLSGLSNYIKTVNRYSRRQALVQSGWGTQVVFTVVATAIVAACVLLLSTQGESR 186
[Close]
BLAST of mRNA_P-canaliculata_contig97.23767.1 vs. uniprot
Match: A0A4U0UPL1_9PEZI (DUF202 domain-containing protein n=2 Tax=Friedmanniomyces endolithicus TaxID=329885 RepID=A0A4U0UPL1_9PEZI)

HSP 1 Score: 126 bits (316), Expect = 2.190e-34
Identity = 61/89 (68.54%), Postives = 75/89 (84.27%), Query Frame = 2 
Query:    2 VAILISFHLNDEPTATERHVALPFGVLFWLLGCSCLAAGLHNYIKTVNGYATRRALVQSGIGTQVVFTIVASAIIAACVLFLSTNATTR 268
            VAILISFHL  +P+A ER VALPFG++FW L  +CL +G  NYIKTVN Y+ R+A+VQ+G GTQ+VFT+VA+AIIAACVLFLSTNA T+
Sbjct:   89 VAILISFHLKHQPSAIERRVALPFGLVFWFLALACLISGFSNYIKTVNKYSRRQAMVQTGTGTQIVFTVVAAAIIAACVLFLSTNAGTK 177
[Close]
BLAST of mRNA_P-canaliculata_contig97.23767.1 vs. uniprot
Match: M3A2B5_PSEFD (DUF202 domain-containing protein n=4 Tax=Pseudocercospora TaxID=131324 RepID=M3A2B5_PSEFD)

HSP 1 Score: 125 bits (314), Expect = 4.520e-34
Identity = 61/86 (70.93%), Postives = 72/86 (83.72%), Query Frame = 2 
Query:    2 VAILISFHLNDEPTATERHVALPFGVLFWLLGCSCLAAGLHNYIKTVNGYATRRALVQSGIGTQVVFTIVASAIIAACVLFLSTNA 259
            VAILISFHL  +PT  ER VALPFG++FWLL   C+ +GL+NY+KTVN Y+ R+ALVQSG GTQVVFT+VA AI+AACVLFLST A
Sbjct:   89 VAILISFHLKHQPTELERKVALPFGIVFWLLALGCMGSGLNNYVKTVNRYSRRQALVQSGWGTQVVFTVVAVAIVAACVLFLSTQA 174
[Close]
BLAST of mRNA_P-canaliculata_contig97.23767.1 vs. uniprot
Match: A0A6J3M0V9_9PEZI (uncharacterized protein n=1 Tax=Dissoconium aciculare CBS 342.82 TaxID=1314786 RepID=A0A6J3M0V9_9PEZI)

HSP 1 Score: 124 bits (312), Expect = 8.340e-34
Identity = 56/86 (65.12%), Postives = 74/86 (86.05%), Query Frame = 2 
Query:    2 VAILISFHLNDEPTATERHVALPFGVLFWLLGCSCLAAGLHNYIKTVNGYATRRALVQSGIGTQVVFTIVASAIIAACVLFLSTNA 259
            VAI++SFHL  +PTA E  VA P G++FWLL  +CL +GLHNY+KTVN Y+TR+A+VQSG+GTQ+VFT++ASAI+AAC+LFLST +
Sbjct:   88 VAIMVSFHLKRQPTAIELKVAAPLGLIFWLLSLACLISGLHNYVKTVNHYSTRQAIVQSGLGTQLVFTVIASAIVAACILFLSTGS 173
[Close]
BLAST of mRNA_P-canaliculata_contig97.23767.1 vs. uniprot
Match: A0A2I0RW38_9PEZI (DUF202 domain-containing protein n=2 Tax=Cercospora TaxID=29002 RepID=A0A2I0RW38_9PEZI)

HSP 1 Score: 124 bits (312), Expect = 1.170e-33
Identity = 59/85 (69.41%), Postives = 73/85 (85.88%), Query Frame = 2 
Query:    2 VAILISFHLNDEPTATERHVALPFGVLFWLLGCSCLAAGLHNYIKTVNGYATRRALVQSGIGTQVVFTIVASAIIAACVLFLSTN 256
            +AILISFH + +P+  ER +ALPFG+LFW+L  +CL +GLHNYIKTVN Y+ R+ALVQSG GTQVVFT+V+SAI+AACVLFLS N
Sbjct:   95 IAILISFHFHKQPSRLERRLALPFGLLFWVLAVACLISGLHNYIKTVNRYSRRQALVQSGWGTQVVFTVVSSAIVAACVLFLSVN 179
[Close]
BLAST of mRNA_P-canaliculata_contig97.23767.1 vs. uniprot
Match: N1PGM1_DOTSN (DUF202 domain-containing protein n=1 Tax=Dothistroma septosporum (strain NZE10 / CBS 128990) TaxID=675120 RepID=N1PGM1_DOTSN)

HSP 1 Score: 123 bits (309), Expect = 3.600e-33
Identity = 60/86 (69.77%), Postives = 72/86 (83.72%), Query Frame = 2 
Query:    2 VAILISFHLNDEPTATERHVALPFGVLFWLLGCSCLAAGLHNYIKTVNGYATRRALVQSGIGTQVVFTIVASAIIAACVLFLSTNA 259
            +AILISFHL  +PT  ER VALPFG++FW L  +CL +GL+NYIKTVN Y+ R+ALVQSG GTQVVFT+VA+AI+AACVL LST A
Sbjct:   98 IAILISFHLKHQPTPLERRVALPFGLIFWFLAMACLLSGLNNYIKTVNRYSRRQALVQSGWGTQVVFTVVATAIVAACVLLLSTQA 183
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97.23767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A6CGZ5_9PEZI2.570e-3672.09DUF202 domain-containing protein n=1 Tax=Zasmidium... [more]
A0A4U0UDV4_9PEZI9.530e-3670.79DUF202 domain-containing protein n=1 Tax=Salinomyc... [more]
A0A6A6PTZ4_9PEZI9.800e-3672.09DUF202 domain-containing protein n=1 Tax=Neohortae... [more]
M2MZ28_BAUPA1.910e-3570.79DUF202 domain-containing protein n=1 Tax=Baudoinia... [more]
UPI0004E9CE1C2.110e-3469.66uncharacterized protein n=1 Tax=Passalora fulva Ta... [more]
A0A4U0UPL1_9PEZI2.190e-3468.54DUF202 domain-containing protein n=2 Tax=Friedmann... [more]
M3A2B5_PSEFD4.520e-3470.93DUF202 domain-containing protein n=4 Tax=Pseudocer... [more]
A0A6J3M0V9_9PEZI8.340e-3465.12uncharacterized protein n=1 Tax=Dissoconium acicul... [more]
A0A2I0RW38_9PEZI1.170e-3369.41DUF202 domain-containing protein n=2 Tax=Cercospor... [more]
N1PGM1_DOTSN3.600e-3369.77DUF202 domain-containing protein n=1 Tax=Dothistro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97contigP-canaliculata_contig97:41834..42289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size374
Cds size300
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97.23767.1prot_P-canaliculata_contig97.23767.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig97 41908..42289 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817331.2330546-UTR-P-canaliculata_contig97:41833..419071622817331.2330546-UTR-P-canaliculata_contig97:41833..41907Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97 41834..41907 -
1693495228.6083329-UTR-P-canaliculata_contig97:41833..419071693495228.6083329-UTR-P-canaliculata_contig97:41833..41907Pelvetia canaliculata dioeciousUTRP-canaliculata_contig97 41834..41907 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817331.2454727-CDS-P-canaliculata_contig97:41907..420111622817331.2454727-CDS-P-canaliculata_contig97:41907..42011Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97 41908..42011 -
1693495228.6179278-CDS-P-canaliculata_contig97:41907..420111693495228.6179278-CDS-P-canaliculata_contig97:41907..42011Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97 41908..42011 -
1622817331.2575178-CDS-P-canaliculata_contig97:42093..422891622817331.2575178-CDS-P-canaliculata_contig97:42093..42289Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97 42094..42289 -
1693495228.6278148-CDS-P-canaliculata_contig97:42093..422891693495228.6278148-CDS-P-canaliculata_contig97:42093..42289Pelvetia canaliculata dioeciousCDSP-canaliculata_contig97 42094..42289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig97.23767.1

>prot_P-canaliculata_contig97.23767.1 ID=prot_P-canaliculata_contig97.23767.1|Name=mRNA_P-canaliculata_contig97.23767.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=100bp
RRHSHLIPPERRTDRDGASCRTAIRRLVLAPGVQLSRRRTPQLHQDGQRI
CDPSSISSERYRDAGGVHHRRECNHRRVCLVLVHQRYDAMNLIYGRAST*
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mRNA from alignment at P-canaliculata_contig97:41834..42289-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig97.23767.1 ID=mRNA_P-canaliculata_contig97.23767.1|Name=mRNA_P-canaliculata_contig97.23767.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=456bp|location=Sequence derived from alignment at P-canaliculata_contig97:41834..42289- (Pelvetia canaliculata dioecious)
CGTCGCCATTCTCATCTCATTCCACCTGAACGACGAACCGACCGCGACGG
AGCGTCATGTCGCACTGCCATTCGGCGTCTTGTTCTGGCTCCTGGGGTGC
AGCTGTCTCGCCGCCGGACTCCACAATTACATCAAGACGGTCAACGGATA
TGCGACCCGTCGAGCATTAGTTCAGAGCGGTATCGGGACGCAGGTGGTAA
TGTCGGCCCCTTTCTTGCGCCACGGTCCTGTCGAGTCGGTGGCTTCGAAG
CACCCCGGCTAATGTGCGCCACGCACAGGTGTTCACCATCGTCGCGAGTG
CAATCATCGCCGCGTGTGTCTTGTTCTTGTCCACCAACGCTACGACGCGA
TGAACCTGATCTACGGTCGAGCATCTACATGAGCCGTCAACCTCTTCTCC
GAGTCCGAACCCCATTCGAGTACCGTCTCATGCGTCATGTCAGGCCGCAA
CCGAAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig97:41834..42289-

>mRNA_P-canaliculata_contig97.23767.1 ID=mRNA_P-canaliculata_contig97.23767.1|Name=mRNA_P-canaliculata_contig97.23767.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at P-canaliculata_contig97:41834..42289- (Pelvetia canaliculata dioecious)
CGTCGCCATTCTCATCTCATTCCACCTGAACGACGAACCGACCGCGACGG
AGCGTCATGTCGCACTGCCATTCGGCGTCTTGTTCTGGCTCCTGGGGTGC
AGCTGTCTCGCCGCCGGACTCCACAATTACATCAAGACGGTCAACGGATA
TGCGACCCGTCGAGCATTAGTTCAGAGCGGTATCGGGACGCAGGTGCGTC
GCCATTCTCATCTCATTCCACCTGAACGACGAACCGACCGCGACGGAGCG
TCATGTCGCACTGCCATTCGGCGTCTTGTTCTGGCTCCTGGGGTGCAGCT
GTCTCGCCGCCGGACTCCACAATTACATCAAGACGGTCAACGGATATGCG
ACCCGTCGAGCATTAGTTCAGAGCGGTATCGGGACGCAGGTGGTGTTCAC
CATCGTCGCGAGTGCAATCATCGCCGCGTGTGTCTTGTTCTTGTCCACCA
ACGCTACGACGCGATGAACCTGATCTACGGTCGAGCATCTACATGAGTGT
TCACCATCGTCGCGAGTGCAATCATCGCCGCGTGTGTCTTGTTCTTGTCC
ACCAACGCTACGACGCGATGAACCTGATCTACGGTCGAGCATCTACATGA
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