mRNA_P-canaliculata_contig96855.23725.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig96855.23725.1
Unique NamemRNA_P-canaliculata_contig96855.23725.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig96855.23725.1 vs. uniprot
Match: A0A518EUD8_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EUD8_9BACT)

HSP 1 Score: 243 bits (621), Expect = 9.700e-75
Identity = 134/291 (46.05%), Postives = 187/291 (64.26%), Query Frame = 1 
Query:   16 QALLADHGGTHRLRPIVLTTVFGLDKSLASRIAKSLRENDVLKALHALPSPKGLQLLEHAFAEHGLSRSMLDAFSNAVDAYRGVLLEFSGGRTGLEASLAGWIPNLRAKAERDARRLVYRGLTTLDGTRTGTVYNSIYVQPSSEDSSKLDLFIVGVREDLRRLRPDEEIPLMVMAGHKSFGDWRDQRQSLDGMPMGRESEAHDDPRHMLIEPLCSDPVQELELVR-RGESTVVRISKASLDVNELATVAFGWKMSEYFSTGEEGSSDYHHISFTASVPAECMTIDLFIHED 885
            +AL +   G+  +RP+ LT   GL+KSLASR+ ++L E D L+AL  +P+P+GLQL+ HA  +   S ++L+  + A +AY  +L EFSGGRT LEA+LAGW+P  R +AERDARR V+RG+TTL GTR GTVYNSIY+ PSSED  +LD  +V +R+D+RRLR    + +M     +   DWR +R++L G       E  +DP   L+  LCS P+ +LE+ R R ++T +RI++ SLDVNE AT+  G +   +F       S Y  +   A  PAE +T DLFIH D
Sbjct:   30 EALHSAEAGS--IRPVQLTHELGLNKSLASRVIRALHEEDSLRALRGIPTPQGLQLIHHAARKAQASDAVLERLNRATEAYAELLSEFSGGRTDLEATLAGWLPEERERAERDARRSVFRGMTTLCGTRAGTVYNSIYLLPSSEDPERLDSLLVAIRQDVRRLRVGAPLLVMSFGPFRDDEDWRSKRRTLGGR------EVQEDPLSFLLPDLCSHPIPKLEVTRSRCDATEIRIAEDSLDVNEFATLGLGCRTLGHFERFATPESRYGCMPVRAGRPAEALTFDLFIHRD 312
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BLAST of mRNA_P-canaliculata_contig96855.23725.1 vs. uniprot
Match: A0A7D8UGG0_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7D8UGG0_9BACT)

HSP 1 Score: 99.8 bits (247), Expect = 3.550e-20
Identity = 67/279 (24.01%), Postives = 128/279 (45.88%), Query Frame = 1 
Query:   58 PIVLTTVFGLDKSLASRIAKSLRENDVLKALHALPSPKGLQLLEHAFAEHGLSRSMLDAFSNAVDAYRGVLLEFSGGRTGLEASLAGWIPNLRAKAERDARRLVYRGLTTLDGTRTGTVYNSIYVQPSSEDSSKLDLFIVGVREDLRRLRPDEEIPLMVMAGHKSFGDWRDQRQSLDGMPMGRESEAHDDPRHMLIEPLCSDPVQELELVRRGESTVVRISKA-SLDVNELATVAFGWKMSEYF--STGEEGSSDYHHISFTASVPAECMTIDLFIHED 885
            P  +   +G++   A R+A +L+  D L  L  +P P+ L+ L  A  + G+   +L+  + A DA++ ++   +G R+GL+A +A W+P  RA+ + DA++  YRG+  L G    TV+ + ++ P      + D  I+     LR +RP   + L +  G           +S++G+ +       ++PR +LI+  C     EL     G++ V       ++ ++    +  G     +F  S   +       ++   SVP      D+ +H+D
Sbjct:   38 PKDVARTYGMNAVFAQRLAAALKRTDPLATLQHIPGPEPLRRLIEAARKKGVPEPLLEQATAANDAFQHIIRHVAGDRSGLDAIIAAWLPEARARIDNDAKQSAYRGMRQLKGIAANTVFFTCFIHPGGPGQPRHDQLILRGHMGLRCVRPGAPLTLSIRTGSTRPTPV----ESIEGVSV------RENPRSILIDEFCCGLPLELSCHEIGDAAVYTFDWGDAVGISSARDIVLGELTRAFFRPSCPPDSPRPRSGVTHGISVPTALYFFDMILHKD 306
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BLAST of mRNA_P-canaliculata_contig96855.23725.1 vs. uniprot
Match: A0A7L9BK03_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A7L9BK03_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 3.370e-12
Identity = 48/158 (30.38%), Postives = 81/158 (51.27%), Query Frame = 1 
Query:   37 GGTHRLRPIVLTTVFGLDKSLASRIAKSLRENDVLKALHALPSPKGLQLLEHAFAEHGLSRSMLDAFSNAVDAYRGVLLEFSGGRTGLEASLAGWIPNLRAKAERDARRLVYRGLTTLDGTRTGTVYNSIYVQPSSEDSSKLDLFIVGVREDLRRLRP 510
            GGT  + P  L    G+DK LASR+ K+LRE D   +LHA+P P+ L+ +  A    G+   +    S A+  Y  ++   +G R+ L+A L+ W P+ R + E   ++ ++R ++ + G R    + ++ V     + +  DL  V     L R+RP
Sbjct:   78 GGT--VGPTALAGALGIDKVLASRLLKALRERDAASSLHAMPGPEPLRRVARACVARGVHEVVGLRASEAIARYEALIRGRAGDRSRLDAVLSAWAPSARREFELRRKQSLFRAMSEVRGVRAAFSHATVIVGRGQNEEA-FDLVWVNGYRSLCRVRP 232
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig96855.23725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A518EUD8_9BACT9.700e-7546.05Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7D8UGG0_9BACT3.550e-2024.01Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A7L9BK03_9BACT3.370e-1230.38Uncharacterized protein n=1 Tax=Phycisphaeraceae b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig96855contigP-canaliculata_contig96855:94..978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size885
Cds size885
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817329.7948668-CDS-P-canaliculata_contig96855:93..9781622817329.7948668-CDS-P-canaliculata_contig96855:93..978Pelvetia canaliculata dioeciousCDSP-canaliculata_contig96855 94..978 +
1693495227.8590915-CDS-P-canaliculata_contig96855:93..9781693495227.8590915-CDS-P-canaliculata_contig96855:93..978Pelvetia canaliculata dioeciousCDSP-canaliculata_contig96855 94..978 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig96855.23725.1prot_P-canaliculata_contig96855.23725.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig96855 94..978 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig96855.23725.1

>prot_P-canaliculata_contig96855.23725.1 ID=prot_P-canaliculata_contig96855.23725.1|Name=mRNA_P-canaliculata_contig96855.23725.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=295bp
MGAALQALLADHGGTHRLRPIVLTTVFGLDKSLASRIAKSLRENDVLKAL
HALPSPKGLQLLEHAFAEHGLSRSMLDAFSNAVDAYRGVLLEFSGGRTGL
EASLAGWIPNLRAKAERDARRLVYRGLTTLDGTRTGTVYNSIYVQPSSED
SSKLDLFIVGVREDLRRLRPDEEIPLMVMAGHKSFGDWRDQRQSLDGMPM
GRESEAHDDPRHMLIEPLCSDPVQELELVRRGESTVVRISKASLDVNELA
TVAFGWKMSEYFSTGEEGSSDYHHISFTASVPAECMTIDLFIHED
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mRNA from alignment at P-canaliculata_contig96855:94..978+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig96855.23725.1 ID=mRNA_P-canaliculata_contig96855.23725.1|Name=mRNA_P-canaliculata_contig96855.23725.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=885bp|location=Sequence derived from alignment at P-canaliculata_contig96855:94..978+ (Pelvetia canaliculata dioecious)
ATGGGGGCGGCGCTGCAGGCGCTCCTCGCGGACCATGGCGGAACGCACCG
GCTTCGACCGATCGTGCTGACCACAGTCTTCGGCCTCGACAAGAGTCTAG
CGAGTCGGATCGCCAAGTCGCTGCGCGAGAACGATGTTCTCAAAGCTCTG
CACGCTTTGCCCAGTCCAAAGGGCCTGCAGCTGCTTGAGCACGCCTTTGC
CGAGCATGGTCTGAGCCGATCAATGCTCGATGCCTTTTCTAACGCCGTCG
ATGCCTACCGCGGCGTCCTCTTGGAATTCAGCGGGGGACGGACGGGGCTA
GAGGCCTCGCTCGCCGGCTGGATACCGAATCTGCGAGCGAAGGCCGAGCG
GGACGCAAGGAGACTTGTCTATCGTGGGCTCACGACCCTCGATGGGACAC
GCACTGGCACGGTGTATAACTCGATCTACGTCCAGCCGTCCTCGGAGGAC
TCGTCAAAGCTCGACCTGTTCATCGTTGGCGTCCGCGAGGACCTTCGTCG
CCTTCGGCCCGATGAGGAAATTCCGCTCATGGTGATGGCTGGTCACAAGA
GCTTTGGAGACTGGCGCGATCAGCGTCAGAGTCTCGACGGCATGCCGATG
GGGCGCGAGTCAGAGGCGCACGATGATCCTCGTCATATGTTGATCGAGCC
GCTCTGTTCGGACCCTGTTCAGGAGCTGGAACTGGTCAGACGGGGGGAGT
CTACGGTCGTCAGGATCTCGAAGGCTTCTCTAGACGTCAACGAGCTGGCC
ACGGTGGCGTTTGGGTGGAAGATGAGCGAGTACTTCTCCACCGGTGAAGA
AGGTTCTTCGGATTATCACCACATCTCCTTTACCGCGTCGGTTCCGGCTG
AGTGCATGACCATTGACCTGTTCATTCACGAGGAT
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Coding sequence (CDS) from alignment at P-canaliculata_contig96855:94..978+

>mRNA_P-canaliculata_contig96855.23725.1 ID=mRNA_P-canaliculata_contig96855.23725.1|Name=mRNA_P-canaliculata_contig96855.23725.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1770bp|location=Sequence derived from alignment at P-canaliculata_contig96855:94..978+ (Pelvetia canaliculata dioecious)
ATGGGGGCGGCGCTGCAGGCGCTCCTCGCGGACCATGGCGGAACGCACCG
GCTTCGACCGATCGTGCTGACCACAGTCTTCGGCCTCGACAAGAGTCTAG
CGAGTCGGATCGCCAAGTCGCTGCGCGAGAACGATGTTCTCAAAGCTCTG
CACGCTTTGCCCAGTCCAAAGGGCCTGCAGCTGCTTGAGCACGCCTTTGC
CGAGCATGGTCTGAGCCGATCAATGCTCGATGCCTTTTCTAACGCCGTCG
ATGCCTACCGCGGCGTCCTCTTGGAATTCAGCGGGGGACGGACGGGGCTA
GAGGCCTCGCTCGCCGGCTGGATACCGAATCTGCGAGCGAAGGCCGAGCG
GGACGCAAGGAGACTTGTCTATCGTGGGCTCACGACCCTCGATGGGACAC
GCACTGGCACGGTGTATAACTCGATCTACGTCCAGCCGTCCTCGGAGGAC
TCGTCAAAGCTCGACCTGTTCATCGTTGGCGTCCGCGAGGACCTTCGTCG
CCTTCGGCCCGATGAGGAAATTCCGCTCATGGTGATGGCTGGTCACAAGA
GCTTTGGAGACTGGCGCGATCAGCGTCAGAGTCTCGACGGCATGCCGATG
GGGCGCGAGTCAGAGGCGCACGATGATCCTCGTCATATGTTGATCGAGCC
GCTCTGTTCGGACCCTGTTCAGGAGCTGGAACTGGTCAGACGGGGGGAGT
CTACGGTCGTCAGGATCTCGAAGGCTTCTCTAGACGTCAACGAGCTGGCC
ACGGTGGCGTTTGGGTGGAAGATGAGCGAGTACTTCTCCACCGGTGAAGA
AGGTTCTTCGGATTATCACCACATCTCCTTTACCGCGTCGGTTCCGGCTG
AGTGCATGACCATTGACCTGTTCATTCACGAGGATATGGGGGCGGCGCTG
CAGGCGCTCCTCGCGGACCATGGCGGAACGCACCGGCTTCGACCGATCGT
GCTGACCACAGTCTTCGGCCTCGACAAGAGTCTAGCGAGTCGGATCGCCA
AGTCGCTGCGCGAGAACGATGTTCTCAAAGCTCTGCACGCTTTGCCCAGT
CCAAAGGGCCTGCAGCTGCTTGAGCACGCCTTTGCCGAGCATGGTCTGAG
CCGATCAATGCTCGATGCCTTTTCTAACGCCGTCGATGCCTACCGCGGCG
TCCTCTTGGAATTCAGCGGGGGACGGACGGGGCTAGAGGCCTCGCTCGCC
GGCTGGATACCGAATCTGCGAGCGAAGGCCGAGCGGGACGCAAGGAGACT
TGTCTATCGTGGGCTCACGACCCTCGATGGGACACGCACTGGCACGGTGT
ATAACTCGATCTACGTCCAGCCGTCCTCGGAGGACTCGTCAAAGCTCGAC
CTGTTCATCGTTGGCGTCCGCGAGGACCTTCGTCGCCTTCGGCCCGATGA
GGAAATTCCGCTCATGGTGATGGCTGGTCACAAGAGCTTTGGAGACTGGC
GCGATCAGCGTCAGAGTCTCGACGGCATGCCGATGGGGCGCGAGTCAGAG
GCGCACGATGATCCTCGTCATATGTTGATCGAGCCGCTCTGTTCGGACCC
TGTTCAGGAGCTGGAACTGGTCAGACGGGGGGAGTCTACGGTCGTCAGGA
TCTCGAAGGCTTCTCTAGACGTCAACGAGCTGGCCACGGTGGCGTTTGGG
TGGAAGATGAGCGAGTACTTCTCCACCGGTGAAGAAGGTTCTTCGGATTA
TCACCACATCTCCTTTACCGCGTCGGTTCCGGCTGAGTGCATGACCATTG
ACCTGTTCATTCACGAGGAT
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