mRNA_P-canaliculata_contig96638.23701.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig96638.23701.1
Unique NamemRNA_P-canaliculata_contig96638.23701.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig96638.23701.1 vs. uniprot
Match: A0A517YZ71_9BACT (Uncharacterized protein n=1 Tax=Poriferisphaera corsica TaxID=2528020 RepID=A0A517YZ71_9BACT)

HSP 1 Score: 85.9 bits (211), Expect = 1.700e-15
Identity = 75/305 (24.59%), Postives = 140/305 (45.90%), Query Frame = 1 
Query:   19 QQVSGYLRGHVQSLMSGEESAIERSRESIMAPFGTAGATEPFVRQYARAISREIAPATQ-----ADS------------LQVRVNAMILAGRLPDSSALDPV-AVGLQDDDAGVRYLAAVALNGLIARDQVVDNQRGRVLELVNGQLEKETSTFAAAPMFKAMLDLG---AIDPLLQSLNVRVSRHVGRPNADLSPEADALRGIYTRLFSGEGT----AAEVKQLGRAAVRYQFLAARQLAAGNVSDTDSHIE---MIRVGQTTLTFVRERLNSTESIPPSVVAPITQERWDDVVEIANRWSTLL 849
            Q ++ +    V  L SG+E+ I ++R+ +      +G+++ FV+Q+   +  ++A   Q     +DS            L  R+NAMI+     + + ++PV A+GL D++ GVRY A+ A++ +    ++   ++  VL+L+   L +ET + A      A+ ++    A   LL  L  RV  H     A  SPE  AL+ ++T+L +        + ++K     A RY  LA  QL        ++  +   +IR+G   + F  E ++     P  +   ++   W  +    N W+ +L
Sbjct:   54 QAINAFNDYWVMQLASGDEAQIAKARKELKQIVSPSGSSKEFVKQFNHNLLAKLAQVIQKPNIPSDSSADEKAQIENNFLLTRINAMIVLVNT-EGAGIEPVLAIGLNDENPGVRYWASKAVSKIAQYKRLTKEEQAPVLKLLEQALGRETQSAALTEQLAALSNMNVGTARGILLNVLTARVGVHAKDIYASYSPEQKALQEMFTKLIADIARNGIDSDQIKSFTSVAFRYMTLATDQLLTDTAFTNETIADKRTIIRLGDRIMRFAHENIDPGARSPEKIDNALSLGDWAFIKTKVNDWNKIL 357
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig96638.23701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A517YZ71_9BACT1.700e-1524.59Uncharacterized protein n=1 Tax=Poriferisphaera co... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig96638contigP-canaliculata_contig96638:193..1041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size849
Cds size849
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817328.42561-CDS-P-canaliculata_contig96638:192..10411622817328.42561-CDS-P-canaliculata_contig96638:192..1041Pelvetia canaliculata dioeciousCDSP-canaliculata_contig96638 193..1041 -
1693495227.11106-CDS-P-canaliculata_contig96638:192..10411693495227.11106-CDS-P-canaliculata_contig96638:192..1041Pelvetia canaliculata dioeciousCDSP-canaliculata_contig96638 193..1041 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig96638.23701.1prot_P-canaliculata_contig96638.23701.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig96638 193..1041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig96638.23701.1

>prot_P-canaliculata_contig96638.23701.1 ID=prot_P-canaliculata_contig96638.23701.1|Name=mRNA_P-canaliculata_contig96638.23701.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=283bp
WNDAQTQQVSGYLRGHVQSLMSGEESAIERSRESIMAPFGTAGATEPFVR
QYARAISREIAPATQADSLQVRVNAMILAGRLPDSSALDPVAVGLQDDDA
GVRYLAAVALNGLIARDQVVDNQRGRVLELVNGQLEKETSTFAAAPMFKA
MLDLGAIDPLLQSLNVRVSRHVGRPNADLSPEADALRGIYTRLFSGEGTA
AEVKQLGRAAVRYQFLAARQLAAGNVSDTDSHIEMIRVGQTTLTFVRERL
NSTESIPPSVVAPITQERWDDVVEIANRWSTLL
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mRNA from alignment at P-canaliculata_contig96638:193..1041-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig96638.23701.1 ID=mRNA_P-canaliculata_contig96638.23701.1|Name=mRNA_P-canaliculata_contig96638.23701.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=849bp|location=Sequence derived from alignment at P-canaliculata_contig96638:193..1041- (Pelvetia canaliculata dioecious)
TGGAACGACGCCCAGACACAGCAGGTCTCGGGCTATCTGCGGGGTCACGT
GCAATCGCTGATGAGCGGTGAAGAGTCCGCTATCGAGCGTTCGCGTGAAT
CCATCATGGCTCCGTTCGGTACCGCCGGAGCCACCGAGCCCTTCGTCCGG
CAGTATGCCCGCGCTATTTCCCGCGAGATCGCCCCCGCGACCCAGGCGGA
TTCGCTTCAGGTCCGCGTCAACGCAATGATTCTGGCCGGTCGGCTGCCCG
ATTCCAGTGCCCTGGATCCCGTGGCCGTCGGGCTGCAGGACGACGACGCC
GGGGTGCGTTACCTCGCGGCCGTGGCCCTCAACGGCCTGATCGCCCGCGA
TCAGGTGGTGGACAACCAGCGCGGCCGGGTGCTGGAACTCGTCAACGGCC
AGCTCGAAAAAGAGACCAGCACGTTCGCGGCCGCGCCCATGTTCAAGGCC
ATGCTGGACCTGGGGGCAATCGACCCGCTTTTGCAGAGCCTCAACGTCCG
CGTCAGCCGGCACGTGGGCCGCCCCAATGCGGACCTGAGCCCCGAAGCCG
ACGCGCTCCGCGGGATCTACACCCGGCTGTTCAGCGGCGAGGGCACCGCC
GCCGAGGTGAAGCAACTGGGCCGGGCCGCCGTGCGCTACCAGTTTCTTGC
CGCCCGGCAGCTGGCGGCGGGCAACGTCTCGGATACCGACTCGCATATCG
AAATGATCAGAGTTGGCCAGACCACCCTGACTTTCGTCCGCGAGCGACTC
AATTCGACCGAGTCGATCCCCCCGAGCGTGGTCGCCCCGATCACCCAGGA
GCGGTGGGACGACGTGGTCGAGATCGCCAACCGCTGGTCCACGCTGCTT
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Coding sequence (CDS) from alignment at P-canaliculata_contig96638:193..1041-

>mRNA_P-canaliculata_contig96638.23701.1 ID=mRNA_P-canaliculata_contig96638.23701.1|Name=mRNA_P-canaliculata_contig96638.23701.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1698bp|location=Sequence derived from alignment at P-canaliculata_contig96638:193..1041- (Pelvetia canaliculata dioecious)
TGGAACGACGCCCAGACACAGCAGGTCTCGGGCTATCTGCGGGGTCACGT
GCAATCGCTGATGAGCGGTGAAGAGTCCGCTATCGAGCGTTCGCGTGAAT
CCATCATGGCTCCGTTCGGTACCGCCGGAGCCACCGAGCCCTTCGTCCGG
CAGTATGCCCGCGCTATTTCCCGCGAGATCGCCCCCGCGACCCAGGCGGA
TTCGCTTCAGGTCCGCGTCAACGCAATGATTCTGGCCGGTCGGCTGCCCG
ATTCCAGTGCCCTGGATCCCGTGGCCGTCGGGCTGCAGGACGACGACGCC
GGGGTGCGTTACCTCGCGGCCGTGGCCCTCAACGGCCTGATCGCCCGCGA
TCAGGTGGTGGACAACCAGCGCGGCCGGGTGCTGGAACTCGTCAACGGCC
AGCTCGAAAAAGAGACCAGCACGTTCGCGGCCGCGCCCATGTTCAAGGCC
ATGCTGGACCTGGGGGCAATCGACCCGCTTTTGCAGAGCCTCAACGTCCG
CGTCAGCCGGCACGTGGGCCGCCCCAATGCGGACCTGAGCCCCGAAGCCG
ACGCGCTCCGCGGGATCTACACCCGGCTGTTCAGCGGCGAGGGCACCGCC
GCCGAGGTGAAGCAACTGGGCCGGGCCGCCGTGCGCTACCAGTTTCTTGC
CGCCCGGCAGCTGGCGGCGGGCAACGTCTCGGATACCGACTCGCATATCG
AAATGATCAGAGTTGGCCAGACCACCCTGACTTTCGTCCGCGAGCGACTC
AATTCGACCGAGTCGATCCCCCCGAGCGTGGTCGCCCCGATCACCCAGGA
GCGGTGGGACGACGTGGTCGAGATCGCCAACCGCTGGTCCACGCTGCTTT
GGAACGACGCCCAGACACAGCAGGTCTCGGGCTATCTGCGGGGTCACGTG
CAATCGCTGATGAGCGGTGAAGAGTCCGCTATCGAGCGTTCGCGTGAATC
CATCATGGCTCCGTTCGGTACCGCCGGAGCCACCGAGCCCTTCGTCCGGC
AGTATGCCCGCGCTATTTCCCGCGAGATCGCCCCCGCGACCCAGGCGGAT
TCGCTTCAGGTCCGCGTCAACGCAATGATTCTGGCCGGTCGGCTGCCCGA
TTCCAGTGCCCTGGATCCCGTGGCCGTCGGGCTGCAGGACGACGACGCCG
GGGTGCGTTACCTCGCGGCCGTGGCCCTCAACGGCCTGATCGCCCGCGAT
CAGGTGGTGGACAACCAGCGCGGCCGGGTGCTGGAACTCGTCAACGGCCA
GCTCGAAAAAGAGACCAGCACGTTCGCGGCCGCGCCCATGTTCAAGGCCA
TGCTGGACCTGGGGGCAATCGACCCGCTTTTGCAGAGCCTCAACGTCCGC
GTCAGCCGGCACGTGGGCCGCCCCAATGCGGACCTGAGCCCCGAAGCCGA
CGCGCTCCGCGGGATCTACACCCGGCTGTTCAGCGGCGAGGGCACCGCCG
CCGAGGTGAAGCAACTGGGCCGGGCCGCCGTGCGCTACCAGTTTCTTGCC
GCCCGGCAGCTGGCGGCGGGCAACGTCTCGGATACCGACTCGCATATCGA
AATGATCAGAGTTGGCCAGACCACCCTGACTTTCGTCCGCGAGCGACTCA
ATTCGACCGAGTCGATCCCCCCGAGCGTGGTCGCCCCGATCACCCAGGAG
CGGTGGGACGACGTGGTCGAGATCGCCAACCGCTGGTCCACGCTGCTT
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