mRNA_P-canaliculata_contig9615.23654.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9615.23654.1
Unique NamemRNA_P-canaliculata_contig9615.23654.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig9615.23654.1 vs. uniprot
Match: D8LEA1_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEA1_ECTSI)

HSP 1 Score: 419 bits (1077), Expect = 1.370e-144
Identity = 227/290 (78.28%), Postives = 244/290 (84.14%), Query Frame = 1 
Query:    1 SPQDDMGGVELNLDLGKGRVFTLSGVPGRGPFRVSTTHPFLLDGLFVENLEEIQSQARRIQEVMSAAAEVHMCISGDGDEGEEDGGXXXKYDYDYGGEMELIMDDEQAKRSSPGAQEGGSVYEDTNISKMLGEKALVGGAGKGSASSSANTRLMRDLSRLMRSDTEKLGFSLQLKNDDALHEWNINLFGFSDCPLAEDMKKLEKEKRLDHVRLVMKFNDDYPFSPPFVRIVYPRFKRSTGYIIDGAFCMELLTNQGWTPTNDIESVVVQIRAQMVVGKARIDFGNRAVTQ 870
            S +++ GGV L LDLGKG+VFTLSGVPGRGPF VST HPFLLDGLFVENLEEIQ+QARRIQEVMSAAAEV+MCISG+         XXX              DDE+AKRS P  QEGGSV+EDT+IS+ML  KA  G AG  S ++SANTRLMRDLSRLMRSDT+KLGFSLQLKNDDALHEWNINLFGFSDCPLAEDMK+LEKEK LDHVRL+MKF DDYPFSPPFV IVYPRFKRSTGYIIDGAFCMELLTNQGWTPTNDIESVVVQIRAQMVVGKARIDF   +VTQ
Sbjct:   44 STREENGGVVLTLDLGKGKVFTLSGVPGRGPFCVSTVHPFLLDGLFVENLEEIQAQARRIQEVMSAAAEVYMCISGEXXXXXXXXXXXXXXXXXXX--XXXXXDDEKAKRSFP-TQEGGSVFEDTDISQMLSGKAKSG-AGAKSKAASANTRLMRDLSRLMRSDTKKLGFSLQLKNDDALHEWNINLFGFSDCPLAEDMKRLEKEKHLDHVRLMMKFKDDYPFSPPFVHIVYPRFKRSTGYIIDGAFCMELLTNQGWTPTNDIESVVVQIRAQMVVGKARIDFDATSVTQ 329
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BLAST of mRNA_P-canaliculata_contig9615.23654.1 vs. uniprot
Match: A0A835ZBS4_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBS4_9STRA)

HSP 1 Score: 246 bits (627), Expect = 5.260e-77
Identity = 138/276 (50.00%), Postives = 177/276 (64.13%), Query Frame = 1 
Query:   28 ELNLDLGKGRVFTLSGVPGRGPFRVSTTHPFLLDGLFVENLEEIQSQARRIQEVMSAAAEVHMCISGDGDEGEEDGGXXXKYDYDYGGEMELIMDDEQAKRSSPGAQEGGSVYEDTNISKMLGEKALVGGAGKGSASSSANTRLMRDLSRLMRSDTEKLGFSLQLKNDDALHEWNINLFGFSDCPLAEDMKKLEKEKRLDHVRLVMKFNDDYPFSPPFVRIVYPRFKRSTGYIIDGAFCMELLTNQGWTPTNDIESVVVQIRAQMVVGKARIDFGN 855
            E  L +     FT+   PG G F  ST   FL D L++ENLEE  S A  ++ V+  A  V+ CI+G   +   DG    +Y  D G  M+ + D E A +    A++  S  + T   +   E  L+GG    +    ANTRLMRDLSRLMR+DT  LGF+L+L +DD L  W + +FGF+DCPLAEDM KL+KE++L+H+ L MKF +DYP+SPPF R+VYPRF R TGYI+DGAFC ELLT QGWTPTNDIE+V+VQ+R  MV G ARIDF  
Sbjct:   18 EATLSIHGKHEFTIKKAPGSG-FTCSTRDDFLGDNLWLENLEEAVSVANGVETVLKEALGVYKCIAGPASDKGSDGESDYEYQEDMG--MDNVDDTELAAKY---AEKAVSANKATGTWEDRDEVPLIGGYAC-TYVCIANTRLMRDLSRLMRTDTSSLGFTLELVHDDNLTLWRVKVFGFTDCPLAEDMVKLKKERKLEHIELEMKFPEDYPYSPPFCRVVYPRFIRQTGYILDGAFCFELLTKQGWTPTNDIETVIVQLRFLMVFGHARIDFNE 286
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BLAST of mRNA_P-canaliculata_contig9615.23654.1 vs. uniprot
Match: A0A7S3XWH9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWH9_HETAK)

HSP 1 Score: 207 bits (527), Expect = 1.660e-62
Identity = 106/253 (41.90%), Postives = 161/253 (63.64%), Query Frame = 1 
Query:   94 FRVSTTHPFLLDGLFVENLEEIQSQARRIQEVMSAAAEVHMCISGDGDEGEEDGGXXXKYDYDYGGEMELIMDDEQAKRSSPGAQEGGSVYEDTNISKMLGEKALVGGAGKGSASSSANTRLMRDLSRLMRSDTEKLGFSLQLKNDDALHEWNINLFGFSDCPLAEDMKKLEKEKRLDHVRLVMKFNDDYPFSPPFVRIVYPRFKRSTGYI-IDGAFCMELLTNQGWTPTNDIESVVVQIRAQMVVGKARIDF 849
            F V T+  FLLD  F+EN+E+  S+A  ++EV+ A ++ +  I+   +EG+       +YDY           DE  K   P  ++  +  +  +++++          G G  +++ N RLM DL+++MR+DT  LGFSL+ KN+D++  W   LF F DC LA+D+ +L++ K +D V L ++F  DYPFSPPF+R+VYPRFK  TG++ I G+ CMELLTN GWTPTNDIES+++QIR++M+ G ARI+F
Sbjct:    8 FSVETSDEFLLDNFFLENIEDAVSEATAVEEVLCAISDTYKDITSGNEEGDNSANEDEEYDYGS---------DEDFKAEPPPTKDRATKDDWRDVAEI----------GGGHGATAGNKRLMTDLAKIMRTDTTGLGFSLEPKNEDSMDRWVCKLFNFEDCALAQDLVQLKERKDIDFVELELQFKSDYPFSPPFIRVVYPRFKFHTGHVTIGGSICMELLTNSGWTPTNDIESILIQIRSEMIAGDARIEF 241
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BLAST of mRNA_P-canaliculata_contig9615.23654.1 vs. uniprot
Match: A0A1Z5K8B1_FISSO (Ubiquitin-conjugating enzyme E2 Q n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8B1_FISSO)

HSP 1 Score: 147 bits (371), Expect = 3.000e-38
Identity = 80/182 (43.96%), Postives = 106/182 (58.24%), Query Frame = 1 
Query:  304 IMDDEQAKRSSPGAQEGGSVYEDTNISKMLGEKALVGGAGKGSASSSANTRLMRDLSRLMRSDTEKLGFSLQLKNDDALHEWNINLFGFS-DCPLAEDMKKLEKEKRLDHVRLVMKFNDDYPFSPPFVRIVYPRFKRSTGYIIDGAFCMELLTNQGWTPTNDIESVVVQIRAQMVVGKARID 846
            I DDE++  ++   Q+     ++     M  E+   GG            RL +DL R+M  DT + GFSL    +D++  W I LF F  D  LA+DMK L     +DH+ L M F D YPF PPFVR+V PRFKR TG+++ GA CMELLT  GW P NDIESV+V IR+ +VVG  R++
Sbjct:  119 IRDDEESSSTAAPKQKWRQPSQEAVSMSMRAEQETTGG----------KRRLAQDLYRIMNQDTSEAGFSLHPTAEDSMKHWTIELFQFDPDSNLAKDMKVLG----IDHIELEMTFPDQYPFEPPFVRVVKPRFKRQTGFVMSGALCMELLTKDGWNPVNDIESVIVSIRSLLVVGDGRLE 286
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BLAST of mRNA_P-canaliculata_contig9615.23654.1 vs. uniprot
Match: A0A448Z8A8_9STRA (UBC core domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z8A8_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.140e-36
Identity = 70/136 (51.47%), Postives = 95/136 (69.85%), Query Frame = 1 
Query:  439 SSANTRLMRDLSRLMRSDTEKLGFSLQLKNDDALHEWNINLFGFS-DCPLAEDMKKLEKEKRLDHVRLVMKFNDDYPFSPPFVRIVYPRFKRSTGYIIDGAFCMELLTNQGWTPTNDIESVVVQIRAQMVVGKARI 843
            S +  RL +DL R+M  DTE+ GFSL  + +D++ +W I LF F  D  LA+DM  +     +DH++L MKF + YPF PPFVR+V PRFKR TG++++GA CMELLT  GW P NDIESV+V +R+ +VVG  R+
Sbjct:  265 SGSKRRLAQDLYRIMNQDTEEAGFSLAPQTEDSMEKWTIKLFQFDPDSNLAKDMLVVG----IDHIKLEMKFPEQYPFEPPFVRVVNPRFKRQTGFVMNGALCMELLTKDGWNPINDIESVIVSVRSLLVVGDGRL 396
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BLAST of mRNA_P-canaliculata_contig9615.23654.1 vs. uniprot
Match: A0A7S1ZF53_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZF53_TRICV)

HSP 1 Score: 139 bits (350), Expect = 4.270e-36
Identity = 66/131 (50.38%), Postives = 93/131 (70.99%), Query Frame = 1 
Query:  454 RLMRDLSRLMRSDTEKLGFSLQLKNDDALHEWNINLFGFS-DCPLAEDMKKLEKEKRLDHVRLVMKFNDDYPFSPPFVRIVYPRFKRSTGYIIDGAFCMELLTNQGWTPTNDIESVVVQIRAQMVVGKARI 843
            RL  DL ++M +DT++ GF ++ K++D+L  W++ LF F  D  L++D+  L     +D V L M F D YPF PPFVR+V PRFKR TG++++GA CMELLT++GW P NDIESV+V IR+ +VVG  R+
Sbjct:   15 RLAADLYKIMMADTDEAGFKIEPKSEDSLDRWSVRLFAFDEDSNLSKDLAVLG----IDAVELEMSFPDQYPFEPPFVRVVRPRFKRQTGFVMNGALCMELLTSEGWNPVNDIESVIVSIRSLLVVGDGRL 141
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BLAST of mRNA_P-canaliculata_contig9615.23654.1 vs. uniprot
Match: B8C5U5_THAPS (UBC core domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5U5_THAPS)

HSP 1 Score: 145 bits (365), Expect = 5.410e-36
Identity = 71/131 (54.20%), Postives = 94/131 (71.76%), Query Frame = 1 
Query:  454 RLMRDLSRLMRSDTEKLGFSLQLKNDDALHEWNINLFGFS-DCPLAEDMKKLEKEKRLDHVRLVMKFNDDYPFSPPFVRIVYPRFKRSTGYIIDGAFCMELLTNQGWTPTNDIESVVVQIRAQMVVGKARI 843
            RL  DL ++M +DT++ GFSL+  ++D++ +W I LFGF  D  LA+D+  +     +DHV L M F DDYPF PPFVR+V PRFKR TG++++GA CMELLT  GW P NDIESV+V IR+ MVVG  R+
Sbjct:  325 RLASDLYKIMMADTDEAGFSLEPCDEDSMDKWCIKLFGFDCDSHLAKDLMVVG----MDHVELEMSFPDDYPFEPPFVRVVRPRFKRQTGFVMNGALCMELLTKDGWNPINDIESVIVSIRSLMVVGDGRL 451
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BLAST of mRNA_P-canaliculata_contig9615.23654.1 vs. uniprot
Match: K0RZ81_THAOC (UBC core domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RZ81_THAOC)

HSP 1 Score: 143 bits (360), Expect = 1.020e-35
Identity = 73/141 (51.77%), Postives = 95/141 (67.38%), Query Frame = 1 
Query:  454 RLMRDLSRLMRSDTEKLGFSLQLKNDDALHEWNINLFGFS-DCPLAEDMKKLEKEKRLDHVRLVMKFNDDYPFSPPFVRIVYPRFKRSTGYIIDGAFCMELLTNQGWTPTNDIESVVVQIRAQMVVGKAR----IDFGNRA 861
            RL  DL ++M +DT++ GFSL+  ++D++ +W INLFGF  D  LA+D+         D V L M F DDYPF PPFVR+V PRF+R TG+++ GA CMELLT+ GW P NDIESV+V IR+ MVVG  R    +D G  A
Sbjct:  250 RLASDLYKIMMADTKEAGFSLEPVDEDSMDKWRINLFGFDEDSNLAKDLMVCGT----DSVELQMSFPDDYPFKPPFVRVVKPRFQRQTGFVMSGALCMELLTSDGWNPVNDIESVIVSIRSLMVVGNGRLQAAVDMGQDA 386
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BLAST of mRNA_P-canaliculata_contig9615.23654.1 vs. uniprot
Match: B7G7I5_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G7I5_PHATC)

HSP 1 Score: 143 bits (361), Expect = 1.270e-35
Identity = 70/137 (51.09%), Postives = 92/137 (67.15%), Query Frame = 1 
Query:  439 SSANTRLMRDLSRLMRSDTEKLGFSLQLKNDDALHEWNINLFGFS-DCPLAEDMKKLEKEKRLDHVRLVMKFNDDYPFSPPFVRIVYPRFKRSTGYIIDGAFCMELLTNQGWTPTNDIESVVVQIRAQMVVGKARID 846
            S    RL +DL R+M  DT K GFSL+   +D++  W I LF F  D  LA+DM  L     L+H+ L M F + YPF PPFVR+  PRFKR TG++++GA CMELLTN+GW P NDIESV+V +R+ +VVG  R++
Sbjct:  287 SGGKRRLAQDLYRIMNQDTNKAGFSLKPSKEDSMERWTIKLFKFDEDSNLAKDMLVLG----LEHIELEMSFPEQYPFEPPFVRVSRPRFKRQTGFVMNGALCMELLTNEGWNPINDIESVIVSVRSLLVVGDGRLE 419
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BLAST of mRNA_P-canaliculata_contig9615.23654.1 vs. uniprot
Match: A0A7S4V873_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V873_9STRA)

HSP 1 Score: 137 bits (346), Expect = 3.470e-35
Identity = 67/131 (51.15%), Postives = 93/131 (70.99%), Query Frame = 1 
Query:  454 RLMRDLSRLMRSDTEKLGFSLQLKNDDALHEWNINLFGFS-DCPLAEDMKKLEKEKRLDHVRLVMKFNDDYPFSPPFVRIVYPRFKRSTGYIIDGAFCMELLTNQGWTPTNDIESVVVQIRAQMVVGKARI 843
            RL  DL ++M +DT + GFSL+ K++D++ +W I LF F  D  LA+D+  L     +D + L M F + YPF PPFVR+V PRFKR TG++++GA CMELLT++GW P NDIESV+V IR+ +VVG  R+
Sbjct:   66 RLASDLYKVMMADTNEAGFSLEPKSEDSMDKWTIKLFKFDEDSNLAKDLLCLG----MDFIELEMSFPEQYPFEPPFVRVVRPRFKRQTGFVMNGALCMELLTSEGWNPINDIESVIVSIRSLLVVGDGRL 192
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9615.23654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEA1_ECTSI1.370e-14478.28UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A835ZBS4_9STRA5.260e-7750.00Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A7S3XWH9_HETAK1.660e-6241.90Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Z5K8B1_FISSO3.000e-3843.96Ubiquitin-conjugating enzyme E2 Q n=2 Tax=Fistulif... [more]
A0A448Z8A8_9STRA2.140e-3651.47UBC core domain-containing protein n=1 Tax=Pseudo-... [more]
A0A7S1ZF53_TRICV4.270e-3650.38Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
B8C5U5_THAPS5.410e-3654.20UBC core domain-containing protein n=1 Tax=Thalass... [more]
K0RZ81_THAOC1.020e-3551.77UBC core domain-containing protein n=1 Tax=Thalass... [more]
B7G7I5_PHATC1.270e-3551.09Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S4V873_9STRA3.470e-3551.15Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9615contigP-canaliculata_contig9615:6153..10066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score417.9
Seed ortholog evalue3.8e-114
Seed eggNOG ortholog2880.D8LEA1
Preferred nameUBE2Q1
KEGG koko:K10582,ko:K19362
KEGG Pathwayko04120,map04120
GOsGO:0000003,GO:0000209,GO:0001967,GO:0002790,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006807,GO:0006810,GO:0007154,GO:0007267,GO:0007275,GO:0007565,GO:0007566,GO:0007610,GO:0007617,GO:0007618,GO:0007631,GO:0008104,GO:0008150,GO:0008152,GO:0009306,GO:0009566,GO:0009914,GO:0009987,GO:0010817,GO:0015031,GO:0015833,GO:0016020,GO:0016567,GO:0016740,GO:0019098,GO:0019538,GO:0019787,GO:0019953,GO:0022414,GO:0023052,GO:0023061,GO:0030072,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032940,GO:0033036,GO:0036211,GO:0036477,GO:0040011,GO:0042886,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044297,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0044706,GO:0045184,GO:0046879,GO:0046903,GO:0048609,GO:0048731,GO:0048856,GO:0051179,GO:0051234,GO:0051704,GO:0051705,GO:0061458,GO:0061631,GO:0061650,GO:0065007,GO:0065008,GO:0070459,GO:0070647,GO:0070936,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0097458,GO:0140096,GO:1901564
EggNOG free text desc.ubiquitin conjugating enzyme activity
EggNOG OGsKOG0897@1,KOG0897@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-conjugating enzyme E2
Ec32 orthologEc-00_001460.1
Exons6
Model size876
Cds size861
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817324.8821442-UTR-P-canaliculata_contig9615:6152..61671622817324.8821442-UTR-P-canaliculata_contig9615:6152..6167Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9615 6153..6167 +
1693495224.6955898-UTR-P-canaliculata_contig9615:6152..61671693495224.6955898-UTR-P-canaliculata_contig9615:6152..6167Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9615 6153..6167 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817324.895863-CDS-P-canaliculata_contig9615:6167..63351622817324.895863-CDS-P-canaliculata_contig9615:6167..6335Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9615 6168..6335 +
1693495224.7159052-CDS-P-canaliculata_contig9615:6167..63351693495224.7159052-CDS-P-canaliculata_contig9615:6167..6335Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9615 6168..6335 +
1622817324.909091-CDS-P-canaliculata_contig9615:7028..71721622817324.909091-CDS-P-canaliculata_contig9615:7028..7172Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9615 7029..7172 +
1693495224.727538-CDS-P-canaliculata_contig9615:7028..71721693495224.727538-CDS-P-canaliculata_contig9615:7028..7172Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9615 7029..7172 +
1622817324.921748-CDS-P-canaliculata_contig9615:7838..79511622817324.921748-CDS-P-canaliculata_contig9615:7838..7951Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9615 7839..7951 +
1693495224.7358136-CDS-P-canaliculata_contig9615:7838..79511693495224.7358136-CDS-P-canaliculata_contig9615:7838..7951Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9615 7839..7951 +
1622817324.9373283-CDS-P-canaliculata_contig9615:8645..87961622817324.9373283-CDS-P-canaliculata_contig9615:8645..8796Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9615 8646..8796 +
1693495224.7464201-CDS-P-canaliculata_contig9615:8645..87961693495224.7464201-CDS-P-canaliculata_contig9615:8645..8796Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9615 8646..8796 +
1622817324.9504013-CDS-P-canaliculata_contig9615:9395..95691622817324.9504013-CDS-P-canaliculata_contig9615:9395..9569Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9615 9396..9569 +
1693495224.7552373-CDS-P-canaliculata_contig9615:9395..95691693495224.7552373-CDS-P-canaliculata_contig9615:9395..9569Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9615 9396..9569 +
1622817324.964982-CDS-P-canaliculata_contig9615:9955..100661622817324.964982-CDS-P-canaliculata_contig9615:9955..10066Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9615 9956..10066 +
1693495224.7645342-CDS-P-canaliculata_contig9615:9955..100661693495224.7645342-CDS-P-canaliculata_contig9615:9955..10066Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9615 9956..10066 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9615.23654.1prot_P-canaliculata_contig9615.23654.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9615 6168..10066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9615.23654.1

>prot_P-canaliculata_contig9615.23654.1 ID=prot_P-canaliculata_contig9615.23654.1|Name=mRNA_P-canaliculata_contig9615.23654.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=287bp
MGGVELNLDLGKGRVFTLSGVPGRGPFRVSTTHPFLLDGLFVENLEEIQS
QARRIQEVMSAAAEVHMCISGDGDEGEEDGGEGEKYDYDYGGEMELIMDD
EQAKRSSPGAQEGGSVYEDTNISKMLGEKALVGGAGKGSASSSANTRLMR
DLSRLMRSDTEKLGFSLQLKNDDALHEWNINLFGFSDCPLAEDMKKLEKE
KRLDHVRLVMKFNDDYPFSPPFVRIVYPRFKRSTGYIIDGAFCMELLTNQ
GWTPTNDIESVVVQIRAQMVVGKARIDFGNRAVTQV*
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mRNA from alignment at P-canaliculata_contig9615:6153..10066+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9615.23654.1 ID=mRNA_P-canaliculata_contig9615.23654.1|Name=mRNA_P-canaliculata_contig9615.23654.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3914bp|location=Sequence derived from alignment at P-canaliculata_contig9615:6153..10066+ (Pelvetia canaliculata dioecious)
TCGCCGCAGGACGACATGGGCGGCGTGGAGCTCAATCTGGACCTCGGGAA
AGGCCGGGTGTTCACCCTCAGCGGCGTGCCTGGGCGGGGACCGTTTCGCG
TGTCCACGACGCACCCGTTCTTGCTGGACGGGCTTTTCGTCGAAAATCTC
GAGGAGATTCAGTCCCAGGCGAGGCGCATACAGGTGACGAATGCCTGCGT
AAGAGCTCGCGTGGCGGCCTTCGTCGAATTCCGTAAAAAGACACAGTAGC
GACGCGTTAGAGTGCCGCCCCTTTATGTATTCAGTCCAACGTCCCGCCCA
CGTTTTCTCGCCGTTGAAGGAAATGAAGATTTCCACCACCCTAGAATCGG
GATCTAGTAAAGGTTTGACGAATTTACAATCCCCTCCTTGCTTTCCGATG
ACGGAAGCGCCAAGCAAGTGGGGGCGGCTGTTTTCGCCGAGACCGCTTCG
GTAGGATCGAGCTTGCGAAGAACGTGATGCCGAAGGATCGTACCTGTCTG
GCACTTCGAAGGTTTTTCGATCTATCGCTTGTCATCCAAGCTCTTCAACG
GAAGGCGCTTGGCGCGCGAGACCGCGAGCTGCCCGATTGGAGCATGCCGA
TCGAGAAAAAGAAACTGACAACCAAGCGCGTGACCAGATCATACCTTACT
TTACGTTGCTTGATGCCCTAGAGTGGCGATCGACTCAGGGGGTTTGGGGA
GGGGTGATGTGCAGAGAAATGGTGATTTTGCTCCAAGCGCTGCGAGACGT
CGCGGTTTGGTGCGACACGACACCAACATGACGCATCCACGCTCACAAGC
TGTCCGGTCCATGCCTTTTTTTGTGTTTTTTCCTCGCGCGCGCTCGTTCG
TTGATGCGATCACCTCGGGGCGAAAGGAGGTGATGTCGGCAGCGGCGGAG
GTCCACATGTGTATCTCGGGGGATGGGGATGAGGGAGAAGAGGATGGTGG
GGAGGGTGAGAAGTACGACTACGACTACGGCGGCGAGATGGAGCTGATCA
TGGACGATGAACAGGCCAAAGTGTGTAACGAAACACGCCACCGGACTGTC
GGGGCCACGGATCGCTCTTTTGAGAGAACCGGTCCCCTCTTGCTTTTTGT
TATTGCAATATTTGTAATAAGTGGGGGCCGCAGCCGCGATCGTTGGAGCG
TCTTCGCTACTTCTCTTCCGGCCCTAATGTTTTATTGTCATTTTATTACG
GGGTAGCTGATTCTGGTTGTTGTTACACCCTCACATACACACACACTCAG
TGCGACCCGACGCGAAGCAATGAAGTATTATGGCGTTCACCCGGCGGGCG
TCCGGCTCACTTATGTTGTAGCTTTACTCTCCAGCGCGCGGAGGGCGCTC
AGAAGTCTCTTTCTCTCAAACGGGGGTGAAAAATTTCTGCTTCCCCTAGA
GATTTGGCGCTCATGTCCCATCCGCACTACCACGGCGCCGGACTGATTGG
GAACGTTGGGGTGGGACTGTCACCAAGCGGTAAAGGGTATTTTCATGTTT
TCGCCGGAAGGGTATTCCGACGACCCCCGGTCGTACTCTTCTCTTTTACT
GTATATAGAGGCGTTAGTGTGCTCTCAAGGCGAGTCCCCCCCCCCCCTCC
CTACACCCATAAGGGTGTCACGTGATTGGTTGTAAAATCGGCTCTTCGTC
TCCTACACGTGCGTTTCACACCCGCCGAATGTTCAGCGATCCTCTCCCGG
AGCCCAGGAGGGGGGTTCCGTGTACGAGGACACGAACATTAGCAAGATGC
TGGGGGAGAAGGCGTTGGTGGGCGGGGCGGGCAAGGGGTCGGCGTCAAGG
TACGCTTCCATCGCTGGGCGAGGATTGCTGCTGCTGCTTTCGCCTCTACA
TAGTTTTGACATTTTAATATTTCGAGGCTTGATACGCTCCACGTCTTGCT
ACCAAAATCCCGAGCACCTTTTGTCGACGGCGGCGCGCAGGGGGGGGGGG
GAGGGTTACGAACGCAATGCGACACAGACTAGAAGGAATGCCTGCGGCAC
ATACTTCGGCGCACACGTAAACTCTCAAAAACGGTTTTGCCGTTCGAGAT
GCAAAGAACGTGCGGAACCGACCGACAGATTCGACATGCATAGATCCTCT
TATATACTTCGCTGGGCCACGTCCCCGCGCCCGCAGCACCGCAGCAGTGT
AGCAGTATAGCAGTGATTAACAGTACACAAGTGCTGCGAACTAAGTGTTG
ATCAGAGCCTGTCACGAGTCCTTGCGCAAGGCGACAAAAACAAGTGTAGT
CATCACTATTAATATTACGTGGTGTCGCCGAAAGAAATGCGCTGCTGCTG
TATACACAGCGCTCGCTGTGGGCGTTGCTAGGATCCCCTCCAATGGATCA
TTTTGGGCTCGTTGGTTCGTTTGTTTTTTCTCCTCGTCTGTTTTATGTGG
GTTCGGCGGCGGCAACTTTTCCTGCCCCTAGATCCACACCTCCTGCATTG
GCCGCTCTCTCGGTCGCTCTCTTTTATCTTCCCCGTCTGCCAGCTCTGCC
AACACGCGCTTGATGAGAGACCTTTCGAGGCTAATGCGGTCCGATACGGA
AAAGCTGGGGTTCTCCCTCCAGCTGAAAAACGACGATGCCCTCCACGAGT
GGAACATCAACCTCTTCGGGTTCAGCGACTGCCCCTTGGCAGAGGTACGC
AACAAGTACGATAACGATAGACACGGTAGACTATAGACACGTCCAAGCGC
CAACGCGGATGATACAACGAGCGATTAAAGATGTGGTCAGGTACGCTTTT
TTTTCGGGGGGAGGGATGGGGTGGGCGGGGCGGGGTTGTCCTACTCTCGA
CGGATGCCCATAAAAAATTGTTCCAGAGCCGCTCGCTAGCGTTTGGGCAG
GCGGGGCGTATTCCTTGCGCAAAGGGATAAAAAAAATGTTGCGACAGGGA
CTCTGGTCCTTTTCTGTCGTGTACTAAATAACTCTCTTAAGATCTAGCTC
TCGGAGTTATCAGAGGTCAAGGGGCGCATTGTTATGTGAATGAAGTGTCG
ATGTCGGTGGTGTCTCAATGCCTTTTTATTTTCTGGTGGTGAATGTTGGG
GAGGGAAGGATCTGCGTCCCCCGACAGAACTAAGGAACAAGAAAGGCGCT
GCGTTCCTCGGCGTACGCCGAGAGACTTCCTTGTCTTGGAGGAGAGGCGA
GACTCTCCTCGGCAACATCTTGCTTAGGGTCAAATCGCCGATGACTTCTT
GCTGCCCTGTCCTCAGCCTCCTTCACCCGTCCTCGGCTCGCAGGATATGA
AAAAGTTAGAAAAAGAGAAGCGCCTGGACCACGTGCGTCTGGTTATGAAG
TTCAACGACGACTACCCCTTCAGCCCTCCCTTTGTGCGCATCGTCTACCC
GCGCTTCAAGCGCTCCACGGGCTACATCATAGACGGTGCCTTTTGTATGG
AACTCCTCACGAATCAGGCGAGGATTTTATTTTGTTTTTCCTTTGTGCCT
ACTTTCGTCTCTCGCCAAAAGGACGAGAGACGCTTTGAGTTCGCCGCTCA
CGCCCCGATCGCTCCACCTGAAAACGTTTTGAAGCGCAATTTATTACCCA
CCGAGGTTTTTTTCGAAGTACAGCAGTGAGTCCGTAAATCTGCGTGACCT
TGCTGCTCGTCTCCAACGGCACTGTTTTTGCGGGGTTTCTTCCCCCCTCT
CACGCCCCCTTCCCCGGATGCCTTCCATGAGTGTGGGGGAGGGTTTGCGC
GCGCGCTCGTCCGTTCTCACCATGGGCAACACTCTCTCTCCCCCTGTCAT
GCGTTTGTCGTACACTCTGGAATGTAAACCGTTCCGCGTACCGGCAAGAG
CAGGGCTGGACGCCGACGAACGACATCGAAAGCGTTGTGGTGCAGATCCG
CGCGCAGATGGTGGTGGGGAAGGCGAGGATTGATTTCGGAAACAGGGCAG
TCACCCAGGTATAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig9615:6153..10066+

>mRNA_P-canaliculata_contig9615.23654.1 ID=mRNA_P-canaliculata_contig9615.23654.1|Name=mRNA_P-canaliculata_contig9615.23654.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1722bp|location=Sequence derived from alignment at P-canaliculata_contig9615:6153..10066+ (Pelvetia canaliculata dioecious)
ATGGGCGGCGTGGAGCTCAATCTGGACCTCGGGAAAGGCCGGGTGTTCAC
CCTCAGCGGCGTGCCTGGGCGGGGACCGTTTCGCGTGTCCACGACGCACC
CGTTCTTGCTGGACGGGCTTTTCGTCGAAAATCTCGAGGAGATTCAGTCC
CAGGCGAGGCGCATACAGATGGGCGGCGTGGAGCTCAATCTGGACCTCGG
GAAAGGCCGGGTGTTCACCCTCAGCGGCGTGCCTGGGCGGGGACCGTTTC
GCGTGTCCACGACGCACCCGTTCTTGCTGGACGGGCTTTTCGTCGAAAAT
CTCGAGGAGATTCAGTCCCAGGCGAGGCGCATACAGGAGGTGATGTCGGC
AGCGGCGGAGGTCCACATGTGTATCTCGGGGGATGGGGATGAGGGAGAAG
AGGATGGTGGGGAGGGTGAGAAGTACGACTACGACTACGGCGGCGAGATG
GAGCTGATCATGGACGATGAACAGGCCAAAGAGGTGATGTCGGCAGCGGC
GGAGGTCCACATGTGTATCTCGGGGGATGGGGATGAGGGAGAAGAGGATG
GTGGGGAGGGTGAGAAGTACGACTACGACTACGGCGGCGAGATGGAGCTG
ATCATGGACGATGAACAGGCCAAACGATCCTCTCCCGGAGCCCAGGAGGG
GGGTTCCGTGTACGAGGACACGAACATTAGCAAGATGCTGGGGGAGAAGG
CGTTGGTGGGCGGGGCGGGCAAGGGGTCGGCGTCAAGCGATCCTCTCCCG
GAGCCCAGGAGGGGGGTTCCGTGTACGAGGACACGAACATTAGCAAGATG
CTGGGGGAGAAGGCGTTGGTGGGCGGGGCGGGCAAGGGGTCGGCGTCAAG
CTCTGCCAACACGCGCTTGATGAGAGACCTTTCGAGGCTAATGCGGTCCG
ATACGGAAAAGCTGGGGTTCTCCCTCCAGCTGAAAAACGACGATGCCCTC
CACGAGTGGAACATCAACCTCTTCGGGTTCAGCGACTGCCCCTTGGCAGA
GCTCTGCCAACACGCGCTTGATGAGAGACCTTTCGAGGCTAATGCGGTCC
GATACGGAAAAGCTGGGGTTCTCCCTCCAGCTGAAAAACGACGATGCCCT
CCACGAGTGGAACATCAACCTCTTCGGGTTCAGCGACTGCCCCTTGGCAG
AGGATATGAAAAAGTTAGAAAAAGAGAAGCGCCTGGACCACGTGCGTCTG
GTTATGAAGTTCAACGACGACTACCCCTTCAGCCCTCCCTTTGTGCGCAT
CGTCTACCCGCGCTTCAAGCGCTCCACGGGCTACATCATAGACGGTGCCT
TTTGTATGGAACTCCTCACGAATCAGGATATGAAAAAGTTAGAAAAAGAG
AAGCGCCTGGACCACGTGCGTCTGGTTATGAAGTTCAACGACGACTACCC
CTTCAGCCCTCCCTTTGTGCGCATCGTCTACCCGCGCTTCAAGCGCTCCA
CGGGCTACATCATAGACGGTGCCTTTTGTATGGAACTCCTCACGAATCAG
GGCTGGACGCCGACGAACGACATCGAAAGCGTTGTGGTGCAGATCCGCGC
GCAGATGGTGGTGGGGAAGGCGAGGATTGATTTCGGAAACAGGGCAGTCA
CCCAGGTATAGGGCTGGACGCCGACGAACGACATCGAAAGCGTTGTGGTG
CAGATCCGCGCGCAGATGGTGGTGGGGAAGGCGAGGATTGATTTCGGAAA
CAGGGCAGTCACCCAGGTATAG
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