mRNA_P-canaliculata_contig96006.23636.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig96006.23636.1
Unique NamemRNA_P-canaliculata_contig96006.23636.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig96006.23636.1 vs. uniprot
Match: A0A6H5JVQ8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVQ8_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 3.060e-8
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 3 
Query:   12 PFLKPGFRSVKRRNKLQPKAVRCWYLGPAPNYPRHAMRILCKSGRIVASRHVTWAHVP 185
            PFLKP    VKR +K +PKA +C+YLGP  N  R+ +RIL + G+ + +R+ TW  VP
Sbjct:   14 PFLKPAVYKVKRTHKSEPKAKKCFYLGPGINTNRNCVRILNEEGQAITTRNFTWQSVP 71
[Close]
BLAST of mRNA_P-canaliculata_contig96006.23636.1 vs. uniprot
Match: A0A6H5KUV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUV5_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 4.410e-8
Identity = 56/184 (30.43%), Postives = 78/184 (42.39%), Query Frame = 3 
Query:   12 PFLKPGFRSVKRRNKLQPKAVRCWYLGPAPNYPRHAMRILCKSGRIVASRHVTWAHVP---THIPSSAVKITSTSSE--------DDGSSGEGYRRRSGKRV---------STSVPRAIHIHVR*RGGSCPAGTLREGQTQSGVDGRIAQVDWREDACGNESRRAPGQAGIGAGGDVRVQRGQR 503
            PFL+P    VKR +K +PKA +C+YLGP  N  R  +RIL +  + + +R+ TW  VP   T +P S   I     E         +G+S +G  R  G+ V         +T+VP    +  R      PA      Q     D        RE A    S  + G A +G G D R    +R
Sbjct:  367 PFLQPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRQAITTRNSTWQSVPAAPTALPQSLPPIAEEEEEFATGEDEVGEGASSQGGGRAEGEPVDGGPSFNLETTAVPGPAGLPAR----VAPAAPPAAPQEPGAGDASDGAPSSREGARVAPSTTSAGMADVGGGEDDRRSSSRR 546
[Close]
BLAST of mRNA_P-canaliculata_contig96006.23636.1 vs. uniprot
Match: A0A6H5KJP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP4_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.370e-7
Identity = 56/178 (31.46%), Postives = 75/178 (42.13%), Query Frame = 3 
Query:   12 PFLKPGFRSVKRRNKLQPKAVRCWYLGPAPNYPRHAMRILCKSGRIVASRHVTWAHVP---THIPSSAVKITS-----TSSEDD---GSSGEGYRRRSGKRV---------STSVPRAIHIHVR*RGGSCPAGTLREGQTQSGVDGRIAQVDWREDACGNESRRAPGQAGIGAGGDVR 485
            PFLKP    VKR +K +PKA +C+YLGP  N  R  +RI+    + + +R+ TW  VP   T +P S   I        + ED+   G+S +G  R  G+RV         +T+ P       R      PA  L   Q     D         ED     S    G A +G G D R
Sbjct:   41 PFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRIVNGKRQAITTRNFTWQSVPAAPTALPQSLPPIAEEEEKFATGEDEVGEGASSQGGGRAEGERVDGGPGFSLGTTAAPGLAGPPAR----VAPAAPLAAPQESGAGDAGDGAPSSTEDESIAPSTTLAGMADVGGGEDDR 214
[Close]
BLAST of mRNA_P-canaliculata_contig96006.23636.1 vs. uniprot
Match: A0A6H5JHM6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM6_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.600e-7
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 3 
Query:   12 PFLKPGFRSVKRRNKLQPKAVRCWYLGPAPNYPRHAMRILCKSGRIVASRHVTWAHVP 185
            PFLKP    VKR +K +PKA +C+YLGP  N  R  +RIL +  R + +R+ TW  VP
Sbjct:   14 PFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTRNFTWQSVP 71
[Close]
BLAST of mRNA_P-canaliculata_contig96006.23636.1 vs. uniprot
Match: A0A6H5JNM2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM2_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.950e-7
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 3 
Query:   12 PFLKPGFRSVKRRNKLQPKAVRCWYLGPAPNYPRHAMRILCKSGRIVASRHVTWAHVP 185
            PFLKP    VKR +K +PKA +C+YLGP  N  R  +RIL +  R + +R+ TW  VP
Sbjct:  120 PFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTRNFTWQSVP 177
[Close]
BLAST of mRNA_P-canaliculata_contig96006.23636.1 vs. uniprot
Match: A0A6H5JMU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMU6_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.980e-7
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 3 
Query:   12 PFLKPGFRSVKRRNKLQPKAVRCWYLGPAPNYPRHAMRILCKSGRIVASRHVTWAHVP 185
            PFLKP    VKR +K +PKA +C+YLGP  N  R  +RIL +  R + +R+ TW  VP
Sbjct:  575 PFLKPAVYKVKRTHKSEPKAQKCFYLGPGINNNRDCVRILNEKRRAITTRNFTWQSVP 632
[Close]
BLAST of mRNA_P-canaliculata_contig96006.23636.1 vs. uniprot
Match: A0A6H5L3E0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E0_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.000e-7
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 3 
Query:   12 PFLKPGFRSVKRRNKLQPKAVRCWYLGPAPNYPRHAMRILCKSGRIVASRHVTWAHVP 185
            PFLKP    VKR +K +PKA +C+YLGP  N  R  +RIL +  R + +R+ TW  VP
Sbjct:  747 PFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTRNFTWQSVP 804
[Close]
BLAST of mRNA_P-canaliculata_contig96006.23636.1 vs. uniprot
Match: A0A6H5JVW7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW7_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.060e-7
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 3 
Query:   12 PFLKPGFRSVKRRNKLQPKAVRCWYLGPAPNYPRHAMRILCKSGRIVASRHVTWAHVP 185
            PFLKP    VKR +K +PKA +C+YLGP  N  R  +RIL +  R + +R+ TW  VP
Sbjct:  125 PFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTRNFTWQSVP 182
[Close]
BLAST of mRNA_P-canaliculata_contig96006.23636.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.060e-7
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 3 
Query:   12 PFLKPGFRSVKRRNKLQPKAVRCWYLGPAPNYPRHAMRILCKSGRIVASRHVTWAHVP 185
            PFLKP    VKR +K +PKA +C+YLGP  N  R  +RIL +  R + +R+ TW  VP
Sbjct:  393 PFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTRNFTWQSVP 450
[Close]
BLAST of mRNA_P-canaliculata_contig96006.23636.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.100e-7
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 3 
Query:   12 PFLKPGFRSVKRRNKLQPKAVRCWYLGPAPNYPRHAMRILCKSGRIVASRHVTWAHVP 185
            PFLKP    VKR +K +PKA +C+YLGP  N  R  +RIL +  R + +R+ TW  VP
Sbjct:  911 PFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTRNFTWQSVP 968
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig96006.23636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVQ8_9PHAE3.060e-848.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KUV5_9PHAE4.410e-830.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJP4_9PHAE1.370e-731.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHM6_9PHAE1.600e-748.28Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JNM2_9PHAE1.950e-748.28Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JMU6_9PHAE1.980e-748.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3E0_9PHAE2.000e-748.28Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JVW7_9PHAE2.060e-748.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE2.060e-748.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTI6_9PHAE2.100e-748.28Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig96006contigP-canaliculata_contig96006:15..821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size514
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig96006.23636.1prot_P-canaliculata_contig96006.23636.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig96006 91..713 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817323.220515-UTR-P-canaliculata_contig96006:14..901622817323.220515-UTR-P-canaliculata_contig96006:14..90Pelvetia canaliculata dioeciousUTRP-canaliculata_contig96006 15..90 +
1693495223.7274582-UTR-P-canaliculata_contig96006:14..901693495223.7274582-UTR-P-canaliculata_contig96006:14..90Pelvetia canaliculata dioeciousUTRP-canaliculata_contig96006 15..90 +
1622817323.2628813-UTR-P-canaliculata_contig96006:713..8211622817323.2628813-UTR-P-canaliculata_contig96006:713..821Pelvetia canaliculata dioeciousUTRP-canaliculata_contig96006 714..821 +
1693495223.7565036-UTR-P-canaliculata_contig96006:713..8211693495223.7565036-UTR-P-canaliculata_contig96006:713..821Pelvetia canaliculata dioeciousUTRP-canaliculata_contig96006 714..821 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817323.2348392-CDS-P-canaliculata_contig96006:90..2691622817323.2348392-CDS-P-canaliculata_contig96006:90..269Pelvetia canaliculata dioeciousCDSP-canaliculata_contig96006 91..269 +
1693495223.7360036-CDS-P-canaliculata_contig96006:90..2691693495223.7360036-CDS-P-canaliculata_contig96006:90..269Pelvetia canaliculata dioeciousCDSP-canaliculata_contig96006 91..269 +
1622817323.2511396-CDS-P-canaliculata_contig96006:562..7131622817323.2511396-CDS-P-canaliculata_contig96006:562..713Pelvetia canaliculata dioeciousCDSP-canaliculata_contig96006 563..713 +
1693495223.7468119-CDS-P-canaliculata_contig96006:562..7131693495223.7468119-CDS-P-canaliculata_contig96006:562..713Pelvetia canaliculata dioeciousCDSP-canaliculata_contig96006 563..713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig96006.23636.1

>prot_P-canaliculata_contig96006.23636.1 ID=prot_P-canaliculata_contig96006.23636.1|Name=mRNA_P-canaliculata_contig96006.23636.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=110bp
MLVPWSSPKLPPSRNAHSVQIWSNCSIAACNLGPCTHSHSKFCCKDHVHE
LRGRRVQRGGVPSAVGKASQHLRPTRHPHPRQIAGRELPSRYSPGGTDPI
WSGWKDCPS*
back to top

mRNA from alignment at P-canaliculata_contig96006:15..821+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig96006.23636.1 ID=mRNA_P-canaliculata_contig96006.23636.1|Name=mRNA_P-canaliculata_contig96006.23636.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=807bp|location=Sequence derived from alignment at P-canaliculata_contig96006:15..821+ (Pelvetia canaliculata dioecious)
GCAGCCCGAAACCCTTCCTAAAGCCAGGATTTCGCAGCGTAAAGAGGAGG
AACAAGTTGCAACCGAAAGCAGTAAGATGCTGGTACCTTGGTCCAGCCCC
AAATTACCCCCGTCACGCAATGCGCATTCTGTGCAAATCTGGTCGAATTG
TAGCATCGCGGCATGTAACTTGGGCCCATGTACCCACTCACATTCCAAGT
TCTGCTGTAAAGATCACGTCCACGAGCTCCGAGGACGACGGGTCCAGCGG
GGAGGGCCACTCCGTGGGTGACAGTACCGACAGCATTTTCGTGTACGACG
GCGTGAGCGTTGGTGATGGTCGGGACGACCTAGACCGCACACCCCAGAAG
ACGAAGGAAAGCCGGCATTGGTGTCAGACCAACTCCGGTAAGGTTTCCAA
CGCGCCGTCCAGGGGCGGGGAGGGCCACTCATTTTTGCGCTCCAGAGCCG
GAGGTGACGGCAGAAGTGGCAGTGATTCCGCGAACAACACCGTGGGAAGC
GAAAACGAGTCCGCACCAACATCACCATCTTCGCAAGACAGCAGAGAGGG
TACCGTCGGCGGTCGGGAAAGCGAGTCAGCACCTCCGTCCCACGCGCCAT
CCACATCCACGTCAGATAGCGGGGAGGGAGTTGCCCAGCCGGTACTCTCC
GGGAGGGACAGACCCAATCTGGAGTGGATGGAAGGATTGCCCAAGTTGAC
TGGCGGGAGGACGCGTGCGGAAACGAGAGCAGGCGCGCTCCTGGCCAAGC
TGGAATCGGTGCGGGAGGAGATGTACGCGTTCAACGTGGCCAACGCATCA
TCCCCAG
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig96006:15..821+

>mRNA_P-canaliculata_contig96006.23636.1 ID=mRNA_P-canaliculata_contig96006.23636.1|Name=mRNA_P-canaliculata_contig96006.23636.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at P-canaliculata_contig96006:15..821+ (Pelvetia canaliculata dioecious)
ATGCTGGTACCTTGGTCCAGCCCCAAATTACCCCCGTCACGCAATGCGCA
TTCTGTGCAAATCTGGTCGAATTGTAGCATCGCGGCATGTAACTTGGGCC
CATGTACCCACTCACATTCCAAGTTCTGCTGTAAAGATCACGTCCACGAG
CTCCGAGGACGACGGGTCCAGCGGGGAGGATGCTGGTACCTTGGTCCAGC
CCCAAATTACCCCCGTCACGCAATGCGCATTCTGTGCAAATCTGGTCGAA
TTGTAGCATCGCGGCATGTAACTTGGGCCCATGTACCCACTCACATTCCA
AGTTCTGCTGTAAAGATCACGTCCACGAGCTCCGAGGACGACGGGTCCAG
CGGGGAGGGGTACCGTCGGCGGTCGGGAAAGCGAGTCAGCACCTCCGTCC
CACGCGCCATCCACATCCACGTCAGATAGCGGGGAGGGAGTTGCCCAGCC
GGTACTCTCCGGGAGGGACAGACCCAATCTGGAGTGGATGGAAGGATTGC
CCAAGTTGAGGTACCGTCGGCGGTCGGGAAAGCGAGTCAGCACCTCCGTC
CCACGCGCCATCCACATCCACGTCAGATAGCGGGGAGGGAGTTGCCCAGC
CGGTACTCTCCGGGAGGGACAGACCCAATCTGGAGTGGATGGAAGGATTG
CCCAAGTTGA
back to top