mRNA_P-canaliculata_contig948.23493.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig948.23493.1
Unique NamemRNA_P-canaliculata_contig948.23493.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig948.23493.1 vs. uniprot
Match: D8LUC9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC9_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 1.460e-58
Identity = 96/156 (61.54%), Postives = 117/156 (75.00%), Query Frame = 3 
Query:  120 PTVQEGLFVKNNWIFKREFFFKRDQPRNGQDVVDMRSNRLAKFGKSGEVGYWKVERRAPPGAKRNLKLALQDGFDVLVLDVPEQGDRKDLIVSYEIPVTRGRYHPSAIMFADEGKIFVAGAKEELTGAAAAARKNIGTFKVDLATLPPIVDRTFTL 587
            P VQ+G F K +W   R+FFFKRDQ +NG D +  R N+LA+F  SGEVGYWK+ RR  PGA +       +G D LVLD+PEQG R++LIVSYEIP++ GRYHPS+IMFA +G I+VA AKE+L G AAAARK IG+F VDL TL P+VDRTFTL
Sbjct:   15 PLVQDGSFAKADWRITRDFFFKRDQAKNGADFLTARENKLARFNNSGEVGYWKLVRRPIPGAPKRQSPLGNEGIDYLVLDIPEQGPRRNLIVSYEIPISNGRYHPSSIMFAQKGTIYVANAKEQLVGPAAAARKKIGSFSVDLPTLEPMVDRTFTL 170
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig948.23493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUC9_ECTSI1.460e-5861.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig948contigP-canaliculata_contig948:1066..3985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_004500.1
Exons4
Model size1306
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig948.23493.1prot_P-canaliculata_contig948.23493.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig948 1134..3269 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817313.69918-UTR-P-canaliculata_contig948:1065..11331622817313.69918-UTR-P-canaliculata_contig948:1065..1133Pelvetia canaliculata dioeciousUTRP-canaliculata_contig948 1066..1133 +
1693495217.8180351-UTR-P-canaliculata_contig948:1065..11331693495217.8180351-UTR-P-canaliculata_contig948:1065..1133Pelvetia canaliculata dioeciousUTRP-canaliculata_contig948 1066..1133 +
1622817313.7705624-UTR-P-canaliculata_contig948:3269..39851622817313.7705624-UTR-P-canaliculata_contig948:3269..3985Pelvetia canaliculata dioeciousUTRP-canaliculata_contig948 3270..3985 +
1693495217.8686175-UTR-P-canaliculata_contig948:3269..39851693495217.8686175-UTR-P-canaliculata_contig948:3269..3985Pelvetia canaliculata dioeciousUTRP-canaliculata_contig948 3270..3985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817313.7169898-CDS-P-canaliculata_contig948:1133..11961622817313.7169898-CDS-P-canaliculata_contig948:1133..1196Pelvetia canaliculata dioeciousCDSP-canaliculata_contig948 1134..1196 +
1693495217.8269732-CDS-P-canaliculata_contig948:1133..11961693495217.8269732-CDS-P-canaliculata_contig948:1133..1196Pelvetia canaliculata dioeciousCDSP-canaliculata_contig948 1134..1196 +
1622817313.731319-CDS-P-canaliculata_contig948:1970..20331622817313.731319-CDS-P-canaliculata_contig948:1970..2033Pelvetia canaliculata dioeciousCDSP-canaliculata_contig948 1971..2033 +
1693495217.836348-CDS-P-canaliculata_contig948:1970..20331693495217.836348-CDS-P-canaliculata_contig948:1970..2033Pelvetia canaliculata dioeciousCDSP-canaliculata_contig948 1971..2033 +
1622817313.7444468-CDS-P-canaliculata_contig948:2684..28941622817313.7444468-CDS-P-canaliculata_contig948:2684..2894Pelvetia canaliculata dioeciousCDSP-canaliculata_contig948 2685..2894 +
1693495217.846088-CDS-P-canaliculata_contig948:2684..28941693495217.846088-CDS-P-canaliculata_contig948:2684..2894Pelvetia canaliculata dioeciousCDSP-canaliculata_contig948 2685..2894 +
1622817313.7560692-CDS-P-canaliculata_contig948:3083..32691622817313.7560692-CDS-P-canaliculata_contig948:3083..3269Pelvetia canaliculata dioeciousCDSP-canaliculata_contig948 3084..3269 +
1693495217.8594432-CDS-P-canaliculata_contig948:3083..32691693495217.8594432-CDS-P-canaliculata_contig948:3083..3269Pelvetia canaliculata dioeciousCDSP-canaliculata_contig948 3084..3269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig948.23493.1

>prot_P-canaliculata_contig948.23493.1 ID=prot_P-canaliculata_contig948.23493.1|Name=mRNA_P-canaliculata_contig948.23493.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=174bp
MLAMLADLTLARSIMPGPTVQEGLFVKNNWIFKREFFFKRDQPRNGQDVV
DMRSNRLAKFGKSGEVGYWKVERRAPPGAKRNLKLALQDGFDVLVLDVPE
QGDRKDLIVSYEIPVTRGRYHPSAIMFADEGKIFVAGAKEELTGAAAAAR
KNIGTFKVDLATLPPIVDRTFTL*
back to top

mRNA from alignment at P-canaliculata_contig948:1066..3985+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig948.23493.1 ID=mRNA_P-canaliculata_contig948.23493.1|Name=mRNA_P-canaliculata_contig948.23493.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2920bp|location=Sequence derived from alignment at P-canaliculata_contig948:1066..3985+ (Pelvetia canaliculata dioecious)
ATTCCGCTGGGCGGTTGCTGTCTTCATGTGCGGTTGCTTCTAGATTGACA
TTGACGCTTTTCTTGGCGATGTTGGCGATGTTGGCGGACTTGACGTTAGC
GAGGAGCATCATGCCAGGGCCGACGGTTCAGGTACGCGTTGTATCTTGAT
TCTTGCACCAATTTTATGGGACTATAGCTTGCGACTTAACAGGTCGAGGA
TAACGTAGTACCTTTCTAGCTATTGGTACTTGTGATGTACCAGTACCATA
CCATAAATGACCACACTGTCGGTACTGCCGTCGCAGCCGCCCGTTAGCAA
GGCCTCACGCGGCAAGCCGAGATGCGTGTAGTCACCTGGAGGGCAAGCGT
AATGTTAGCTGGTCAGCACGGATCGAGGGCAGCACGCAACTTAGTGTTCG
CCATTTGTAAGATGTTTGCATTTGTAGGGCAGTCCTGGATTTGCAGCAGG
TCAACTGCTGTGCTGGCGGGAGATACCGCAGAGCACGCACGTACCCCGTA
CAAGCCATAATGCTAGGTAGGTACCACGCACCGGCAGTTTTTGCGCGGTC
TGATCGTCCCTTTTATCTCGGTTTAAGACTAAACTTACAACAAGACATTT
TGTTTAGCGTGTTTTAGGTGGTACACGCTCAGAGATGTGCGGTTGATTTC
CGTCAGCGTGCCCAGACCTTCGACCCTATTAGGAGGAAGTTGCTTGAAAT
GAAGCTGCGGACAGACAAGTTCTATCTTTAGATCACTACAATACGGAGCG
ACTTGCGCGTTATAGAGAGGAACATGGCCGAGTTCTTTTTGACCGAACGC
AGCGCGTCTCTTACGTAATGCGATCGATATGTCGCCTGCTTCTCTTCGCA
CCCACCCCAAGTCCGGGAACTGTCTTGTCTGCTCGCGTCTTCGTGTGTGC
TCCAGGAAGGCCTGTTTGTCAAGAATAACTGGATTTTCAAGCGTGAGTTC
TTCTTCAAGCGGGATCAGGTATTGCACGCCGTGCCTCCTCGTCGTTGTAA
ACATTGCCCACTCCTTCGCGCTTTTCCGACAGCCAACCTTCCCCAAAGAT
CAGGGGACACCTGTGACCCATTTTGGCTATTTAGGCTCTTCAACTATATA
GAGTCACATGGCTTTCCGGATTCCCCCTTATTACATGAATATCGGTTATT
CACATTTTCAGCGTTATTTCCTGGCAACTGAGAACTAGAGTCACAAAAGC
TCGGTCAAGTTTGCACCCATCAAATACCCTTCCCGCTTTTGGTCTGCGGA
GTCCACCGGGTCACATGTTCTGTTGACGCTCAATACTACTACTGTGTCTC
GCAACGCGCACCACCAGGCACCCGAATAATGCCACAAAACCCTCGTCAGC
TCCAACCGCCCAGGAACAGCTAGAAACGTTATCGACGTCATGGCGATATC
TTTGTCTCAAAACCTGCAGTGTCTGTAATCTGACATGCTGCATGTGATCC
GAAGTCTGAATTACCCACTACAGAGAACACTCGTCTTCCAAGATCACGGT
TCGCCAGATTGCGTACGACGGGCATCTGCCCCTGTAGATATTGCAGCAAG
TCTTTTTTTTGACACACTTACTTTCCCGCCCTTCCACGTTGATTGCGCTC
GGGGGCATCCCTGACACAGCCCCGCAACGGGCAGGACGTGGTGGACATGC
GTTCAAACCGATTGGCCAAGTTCGGCAAATCGGGTGAGGTTGGGTACTGG
AAGGTGGAGCGACGCGCCCCTCCGGGCGCGAAGCGCAACTTGAAGCTAGC
CCTTCAGGACGGGTTTGACGTCCTGGTGCTGGATGTACCGGAGCAAGGAG
ACCGCAAGGACCTCATCGTCTCGTACGAGGTTCGTTCGTTCGTTACGTCC
CGCTCGAGACGAGCGTCTGCCAGGAATACATCGAAATAAGGATAGCATCC
TCCCCGATGCCCTTCAATCCCCCCCCCTTTACCCGACACCGATCGACGTA
CTTTGGATTCGTTTTTTAGAAGCCATGACGCCCCAGTGACCGTGATGCCT
CGCGCGCGATGTTCGCAGATCCCCGTCACGCGAGGGCGGTATCACCCGTC
GGCAATCATGTTTGCCGACGAGGGCAAAATATTCGTGGCCGGGGCAAAGG
AAGAACTTACCGGAGCCGCGGCCGCTGCTCGCAAAAATATTGGTACTTTC
AAGGTGGACTTGGCAACGCTTCCTCCTATAGTCGATCGGACCTTCACGTT
GTAGTTACGAAGATGGTAATGGTGGACGGGAGGAAGCATGAGTGTTTCAA
GACACGACACAGGAGACAATGTCGAAACCGCTAGGGGGAGCCGATTCGGC
AGAATACGGCGCGCACGTGGCGCGGTGTGGCGCCTCTGGTGATTTTGTCG
TGCTTGACTCATGAAAAAAGCTGCGTGATCTTATTAGACCTTCTGTGCCC
GTTAACAGAACGTGTCCGACGAAACGTTCTGTGTTTGTTTTTGATGTGCT
GGGCGGCGAACGAAGAAGCTGGCCGATTGGTCGGTAAAGCACGCAGAGTT
CAATGATATGAGCAAAAGGCTGAAGTTTGACAGCTCGTTTAGAAAGATGT
TCGCAAAACGCCCGATTTTAGTAGTTCCAAGAAAAAGGAAAGCTTGCATG
AACTACTAAATAAAGCGGTAAAAGACTTGCTCGTGGGAGAAACAACCAAT
CGCCCGAAAATGACTCTAAATAAAAGGTTGGGCTACTTTCGGCGTTCCTG
TTTCAAGGTGCTCGCCGTCATGCACCCGAACTCTACTTTCGGTGGGAAAA
ACCGCGGCTCGAAGTTTTTCTGGTGCCTGTTTTCCCGACACATCCCGTGG
TCGGGCTTTGTATTTTCGAGATTCAGACTTTTCAAGATGTAGACTAAGTG
AAACGTCCGAACGGCAAGCGGGCTACGATACCGCGCTCTAAAAATCGACC
AGAACTTAGTCCAGTGCTCT
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig948:1066..3985+

>mRNA_P-canaliculata_contig948.23493.1 ID=mRNA_P-canaliculata_contig948.23493.1|Name=mRNA_P-canaliculata_contig948.23493.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at P-canaliculata_contig948:1066..3985+ (Pelvetia canaliculata dioecious)
ATGTTGGCGATGTTGGCGGACTTGACGTTAGCGAGGAGCATCATGCCAGG
GCCGACGGTTCAGATGTTGGCGATGTTGGCGGACTTGACGTTAGCGAGGA
GCATCATGCCAGGGCCGACGGTTCAGGAAGGCCTGTTTGTCAAGAATAAC
TGGATTTTCAAGCGTGAGTTCTTCTTCAAGCGGGATCAGGAAGGCCTGTT
TGTCAAGAATAACTGGATTTTCAAGCGTGAGTTCTTCTTCAAGCGGGATC
AGCCCCGCAACGGGCAGGACGTGGTGGACATGCGTTCAAACCGATTGGCC
AAGTTCGGCAAATCGGGTGAGGTTGGGTACTGGAAGGTGGAGCGACGCGC
CCCTCCGGGCGCGAAGCGCAACTTGAAGCTAGCCCTTCAGGACGGGTTTG
ACGTCCTGGTGCTGGATGTACCGGAGCAAGGAGACCGCAAGGACCTCATC
GTCTCGTACGAGCCCCGCAACGGGCAGGACGTGGTGGACATGCGTTCAAA
CCGATTGGCCAAGTTCGGCAAATCGGGTGAGGTTGGGTACTGGAAGGTGG
AGCGACGCGCCCCTCCGGGCGCGAAGCGCAACTTGAAGCTAGCCCTTCAG
GACGGGTTTGACGTCCTGGTGCTGGATGTACCGGAGCAAGGAGACCGCAA
GGACCTCATCGTCTCGTACGAGATCCCCGTCACGCGAGGGCGGTATCACC
CGTCGGCAATCATGTTTGCCGACGAGGGCAAAATATTCGTGGCCGGGGCA
AAGGAAGAACTTACCGGAGCCGCGGCCGCTGCTCGCAAAAATATTGGTAC
TTTCAAGGTGGACTTGGCAACGCTTCCTCCTATAGTCGATCGGACCTTCA
CGTTGTAGATCCCCGTCACGCGAGGGCGGTATCACCCGTCGGCAATCATG
TTTGCCGACGAGGGCAAAATATTCGTGGCCGGGGCAAAGGAAGAACTTAC
CGGAGCCGCGGCCGCTGCTCGCAAAAATATTGGTACTTTCAAGGTGGACT
TGGCAACGCTTCCTCCTATAGTCGATCGGACCTTCACGTTGTAG
back to top