mRNA_P-canaliculata_contig9467.23485.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9467.23485.1
Unique NamemRNA_P-canaliculata_contig9467.23485.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig9467.23485.1 vs. uniprot
Match: A0A6H5L3X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X2_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.270e-10
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 3 
Query:  255 PSSTTAARLVVTHSS----------YMDGLIPLLDRFVVDPDAAPKIASVVPGRMYSCSGKHVL 416
            P   T ARLVVTHSS          YMDGLIPLLDRF+ DPDA   ++SV+PGR+Y   G+  L
Sbjct:   67 PERPTPARLVVTHSSECAPARAYPCYMDGLIPLLDRFIADPDAVNSVSSVIPGRIYVVKGRSEL 130
[Close]
BLAST of mRNA_P-canaliculata_contig9467.23485.1 vs. uniprot
Match: D7FP95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP95_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 2.200e-6
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 3 
Query:  303 MDGLIPLLDRFVVDPDAAPKIASVVPGRMYSCSGKHVL 416
            MDGLIPLLDRF+ DPDA   ++SV+PGR+Y   G+  L
Sbjct:    1 MDGLIPLLDRFITDPDAVNSVSSVIPGRIYVVKGRSEL 38
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9467.23485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3X2_9PHAE1.270e-1054.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP95_ECTSI2.200e-660.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9467contigP-canaliculata_contig9467:10861..12109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF2103, metal-binding
Ec32 orthologEc-08_000280.1
Exons2
Model size590
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9467.23485.1prot_P-canaliculata_contig9467.23485.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9467 10923..11947 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817312.630738-UTR-P-canaliculata_contig9467:10860..109221622817312.630738-UTR-P-canaliculata_contig9467:10860..10922Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9467 10861..10922 +
1693495217.0259347-UTR-P-canaliculata_contig9467:10860..109221693495217.0259347-UTR-P-canaliculata_contig9467:10860..10922Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9467 10861..10922 +
1622817312.6680672-UTR-P-canaliculata_contig9467:11947..121091622817312.6680672-UTR-P-canaliculata_contig9467:11947..12109Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9467 11948..12109 +
1693495217.0681145-UTR-P-canaliculata_contig9467:11947..121091693495217.0681145-UTR-P-canaliculata_contig9467:11947..12109Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9467 11948..12109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817312.6439419-CDS-P-canaliculata_contig9467:10922..111581622817312.6439419-CDS-P-canaliculata_contig9467:10922..11158Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9467 10923..11158 +
1693495217.0369651-CDS-P-canaliculata_contig9467:10922..111581693495217.0369651-CDS-P-canaliculata_contig9467:10922..11158Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9467 10923..11158 +
1622817312.655067-CDS-P-canaliculata_contig9467:11817..119471622817312.655067-CDS-P-canaliculata_contig9467:11817..11947Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9467 11818..11947 +
1693495217.0571082-CDS-P-canaliculata_contig9467:11817..119471693495217.0571082-CDS-P-canaliculata_contig9467:11817..11947Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9467 11818..11947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9467.23485.1

>prot_P-canaliculata_contig9467.23485.1 ID=prot_P-canaliculata_contig9467.23485.1|Name=mRNA_P-canaliculata_contig9467.23485.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=122bp
MRTARADVRLLQKCSWMEVHQLRLAGCRGGRERSDAISSWAANMACQALC
GMPLETSSRLQTARPSSTTAARLVVTHSSYMDGLIPLLDRFVVDPDAAPK
IASVVPGRMYSCSGKHVLCML*
back to top

mRNA from alignment at P-canaliculata_contig9467:10861..12109+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9467.23485.1 ID=mRNA_P-canaliculata_contig9467.23485.1|Name=mRNA_P-canaliculata_contig9467.23485.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1249bp|location=Sequence derived from alignment at P-canaliculata_contig9467:10861..12109+ (Pelvetia canaliculata dioecious)
CGAAGACGTGCCTACTGATACTACGTGGGGTGACGTCCAAAAGCCAAGAG
TCAACAGTAGCAATGCGTACAGCACGTGCAGACGTTCGATTGCTTCAAAA
GTGCTCGTGGATGGAGGTTCATCAGCTAAGGCTTGCTGGTTGTAGGGGGG
GCAGGGAACGGAGCGACGCAATCAGCTCTTGGGCAGCGAATATGGCCTGT
CAAGCATTGTGCGGTATGCCGCTCGAGACGAGCAGCAGGCTGCAAACGGC
TAGGCCATCATCCACCACGGCAGCAAGGCTCGTGGTCACGCATAGCAGGT
AGGGGATGCCGTGAAATTGCACTTTGAGGTTGAGCCATGGATTTTTCGAG
CGGATTTTCGAGCAGCCATCAACGTTCAAAATGACACCTACGCCAGTACC
TACAGCACCAGCAACCCCGCGGATTGTGCCGTGCCCTCGTTGCAGCAGCA
GTGCTCCTCCTGTACCGACTCCTTGGAACTCTTGGTTTGCTCTTATCACT
ATCGGCACGCCTCATGACAGACGTTGCATCGCTCTTATCCTTAATATTTC
GTTCCTTTTGCTTTTGCCATACCCTAAGCGCCCCTGAAGTTTTCGAGCTG
TCGGCATCGTGACCTACCCCACTGCACAGTGATGGATCATTCCATTCACG
CTACAAACAGTAGGGCTTACGTTATCAATGATAGAGTCACGGCCAACATC
GGGTATATCCGATGGTTATGTGGCCATTATCGGGTATCCTTTTTAATTTA
ACTAGATCAAAACAGCACCCCGGACACCACCTCATTGGCCAAAAGCCGGC
CACTACCCAATAATGGCCATATTTTCACCGGTATACCCGATTTTGTTTGA
TCCCCTCGGGGCACGTAGGTCACAGCCAACCACTACAAGCGATCCACCTG
ACCAGTACTGATCATACCCCAGCCAAATCTTGCCGACTTCCCCCCCATCT
TCACCAGTTACATGGATGGGCTAATCCCTCTGCTGGACCGCTTTGTTGTG
GACCCTGATGCGGCTCCCAAGATTGCCAGCGTCGTTCCTGGTCGAATGTA
CTCGTGCAGTGGTAAGCATGTATTATGCATGTTGTAGATTATATTTAGCA
CATATAATACGACTCTACCTAAGAATATATTCTTCTACTGTTTGTACACT
CGATTCCGATTCACGAATATTTGTACCCGATCCCAATACTGTAACCCAAT
AAAGTATAACATATTTGAGCCATGTTTAGGTTCACTGTGAGCTTTTGCC
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig9467:10861..12109+

>mRNA_P-canaliculata_contig9467.23485.1 ID=mRNA_P-canaliculata_contig9467.23485.1|Name=mRNA_P-canaliculata_contig9467.23485.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at P-canaliculata_contig9467:10861..12109+ (Pelvetia canaliculata dioecious)
ATGCGTACAGCACGTGCAGACGTTCGATTGCTTCAAAAGTGCTCGTGGAT
GGAGGTTCATCAGCTAAGGCTTGCTGGTTGTAGGGGGGGCAGGGAACGGA
GCGACGCAATCAGCTCTTGGGCAGCGAATATGGCCTGTCAAGCATTGTGC
GGTATGCCGCTCGAGACGAGCAGCAGGCTGCAAACGGCTAGGCCATCATC
CACCACGGCAGCAAGGCTCGTGGTCACGCATAGCAGATGCGTACAGCACG
TGCAGACGTTCGATTGCTTCAAAAGTGCTCGTGGATGGAGGTTCATCAGC
TAAGGCTTGCTGGTTGTAGGGGGGGCAGGGAACGGAGCGACGCAATCAGC
TCTTGGGCAGCGAATATGGCCTGTCAAGCATTGTGCGGTATGCCGCTCGA
GACGAGCAGCAGGCTGCAAACGGCTAGGCCATCATCCACCACGGCAGCAA
GGCTCGTGGTCACGCATAGCAGTTACATGGATGGGCTAATCCCTCTGCTG
GACCGCTTTGTTGTGGACCCTGATGCGGCTCCCAAGATTGCCAGCGTCGT
TCCTGGTCGAATGTACTCGTGCAGTGGTAAGCATGTATTATGCATGTTGT
AGTTACATGGATGGGCTAATCCCTCTGCTGGACCGCTTTGTTGTGGACCC
TGATGCGGCTCCCAAGATTGCCAGCGTCGTTCCTGGTCGAATGTACTCGT
GCAGTGGTAAGCATGTATTATGCATGTTGTAG
back to top