mRNA_P-canaliculata_contig93171.23327.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig93171.23327.1
Unique NamemRNA_P-canaliculata_contig93171.23327.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig93171.23327.1 vs. uniprot
Match: UPI001CCD1051 (hypothetical protein n=1 Tax=Bremerella volcania TaxID=2527984 RepID=UPI001CCD1051)

HSP 1 Score: 75.1 bits (183), Expect = 3.340e-11
Identity = 95/375 (25.33%), Postives = 147/375 (39.20%), Query Frame = 1 
Query:    1 DFLQKLDIDKSNVVEVNELTSGR----TRRFLGDMGVNTKTAIRIDETVKRVEAKAAEKREDARKDFEDKSRPKLNSFGAAPDNYGVDSFGVSDKTEPQIA-SFEERVTGLK-ESDFDEAVLKDAKSIMHTYDRDESKFLEGDEIKRIRWQAPDPSENDLNSDGRLSLFELAQRIQERTDSKSKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSTTNKADAYQAYVDGLFKKYDRDKDSKLSQDELKKMR-RPLKGDADEDGFVTKFEATKYLTDSAAGKRSSXXXXXXXXXXXXXXXXXXXXXXXXXXSKPRGSLSDL----DTNGDGQIQMSEFSTQWDEETLQSFRKSD 1092
            + L+++D D++  +E +EL  GR     RR L   G+    +I ID+  K V+ K  E+RE                  A  D+  + SFG +   EP +       V G   E  F ++V+     IM  YD++++ +L+G E   +RW+  DP+++D N DGRLS+ EL  RI     S+S+                                                   G  +   D Y+ Y + L ++ DR+K+  L +DE  ++R  P   D + DG +T  E T+       G+ S                             P+G L D     D NGDGQI M E++T W    +  F   D
Sbjct:  108 EMLRRMDRDRNGKIEGDEL-EGRGGEFVRRILNGTGMENSKSINIDDASKAVQ-KVREQRE------------------AGVDSASM-SFGAASDAEPAVGFDAPPPVNGKSLEERFGKSVVDQVAGIMERYDKNKNHYLDGPEWSEVRWR-DDPTQDDANKDGRLSMEELCNRIVRSNGSRSR--------------------------------------GDDRGRDDRRSDEGDRSGD-DRYRQYAESLLRQNDRNKNGVLEKDEWGRLRGNPADYDKNGDGKITVEELTQRSESFGRGRSSRDRSDEAPKQETYRFLTATERL-------PKG-LPDWFMRNDLNGDGQIMMHEYTTSWSSSKVAEFNSYD 413
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BLAST of mRNA_P-canaliculata_contig93171.23327.1 vs. uniprot
Match: A0A518CAB4_9BACT (EF hand n=1 Tax=Bremerella volcania TaxID=2527984 RepID=A0A518CAB4_9BACT)

HSP 1 Score: 72.8 bits (177), Expect = 1.850e-10
Identity = 93/373 (24.93%), Postives = 144/373 (38.61%), Query Frame = 1 
Query:    1 DFLQKLDIDKSNVVEVNELTSGR----TRRFLGDMGVNTKTAIRIDETVKRVEAKAAEKREDARKDFEDKSRPKLNSFGAAPDNYGVDSFGVSDKTEPQIASFEERVTGLKESDFDEAVLKDAKSIMHTYDRDESKFLEGDEIKRIRWQAPDPSENDLNSDGRLSLFELAQRIQERTDSKSKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSTTNKADAYQAYVDGLFKKYDRDKDSKLSQDELKKMR-RPLKGDADEDGFVTKFEATKYLTDSAAGKRSSXXXXXXXXXXXXXXXXXXXXXXXXXXSKPRGSLSDL----DTNGDGQIQMSEFSTQWDEETLQSFRKSD 1092
            + L+++D D++  +E +EL  GR     RR L   G+    +I I++  K ++ KA E+RE      E  S     SFGA+ D      F        +  S EER        F + V+     IM  YD++++ +L+G E   +RW+  DP+++D N DGRLS+ EL QR+      +S                                                           D ++ Y + L ++ DR+K+  L +DE  ++R  P   D + DG +T  E T+       G+ S                             P+G L D     D + DGQI M EFST W    +  F + D
Sbjct:   96 EMLRRMDQDRNGKIEGSEL-EGRGGEFVRRMLNGTGMENSNSINIEDASKAIQ-KAREQREAG---VESASM----SFGASSDAKPAAGFDAPPPVNGK--SLEER--------FGKTVVDQVMGIMSRYDKNKNHYLDGPEWSEVRWR-DDPTQDDTNKDGRLSIEELCQRVVRSNGGRSSDRDDSRAENRE----------------------------------------SGDRGGDDRFRQYAESLLRQNDRNKNGVLEKDEWSRLRGNPADYDKNNDGKITVEELTQRSESYGRGRSSRSASSEQSKQETYRFLTATERL-------PKG-LPDWFLRNDQDADGQIMMHEFSTSWSSSKVSEFNQYD 400
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BLAST of mRNA_P-canaliculata_contig93171.23327.1 vs. uniprot
Match: A0A7V8V2W6_9BACT (Uncharacterized protein n=1 Tax=Bremerella alba TaxID=980252 RepID=A0A7V8V2W6_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 5.140e-9
Identity = 59/180 (32.78%), Postives = 90/180 (50.00%), Query Frame = 1 
Query:    4 FLQKLDIDKSNVVEVNELTSGR----TRRFLGDMGVNTKTAIRIDETVKRVEAKAAEKREDARKDFEDKSRPKLNSFGAAPDNYGVDSFGVSDKTEPQIASFEERVTGLKESDFDEAVLKDAKSIMHTYDRDESKFLEGDEIKRIRWQAPDPSENDLNSDGRLSLFELAQRIQERTDSKS 531
             L++LD D++  +E NEL  GR     RR L   G+   ++I +D+  K V+ K  E+RE      E  S     SFGA  D      F        +  S EER        F + V+     IM  YD++++ +L+G E   +RW+  DP+++D + DGRLS+ EL QR+   + S+S
Sbjct:    1 MLRRLDQDRNGKIEGNEL-EGRGGDFVRRILNGTGMENSSSISVDDASKAVQ-KVREQREAG---VESGSM----SFGAESDAKPAAGFDAPPPVNGK--SLEER--------FGKTVVDQVMGIMSRYDKNKNHYLDGPEWSEVRWR-DDPTQDDKDKDGRLSIEELCQRVVRSSGSRS 160
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BLAST of mRNA_P-canaliculata_contig93171.23327.1 vs. uniprot
Match: A0A2S8F0I4_9BACT (EF-hand domain-containing protein n=2 Tax=Pirellulaceae TaxID=2691357 RepID=A0A2S8F0I4_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 3.040e-8
Identity = 92/369 (24.93%), Postives = 143/369 (38.75%), Query Frame = 1 
Query:    4 FLQKLDIDKSNVVEVNELTSGR----TRRFLGDMGVNTKTAIRIDETVKRVEAKAAEKREDARKDFEDKSRPKLNSFGAAPDNYGVDSFGVSDKTEPQIASFEERVTGLKESDFDEAVLKDAKSIMHTYDRDESKFLEGDEIKRIRWQAPDPSENDLNSDGRLSLFELAQRIQERTDSKSKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSTTNKADA-YQAYVDGLFKKYDRDKDSKLSQDELKKMR-RPLKGDADEDGFVTKFEATKYLTDSAAGKRSSXXXXXXXXXXXXXXXXXXXXXXXXXXSKPRGSLSDLDTNGDGQIQMSEFSTQWDEETLQSFRKSD 1092
             L+++D D++  +E +EL  GR     RR L   G+    +I +++  K V+ KA EKRE      E  S     SFGAA D      F        +  S EER        + + ++     IM  YD++++ +L+G E   +RW+  DP+++D + DGRLS+ EL  R+      +S                                                    GS     DA ++ Y + L K+ DR+ +  L +DE  ++R  P   D + DG +T  E T+       G+ S                             P   LS+ D + DGQI M EF+T W    +  F + D
Sbjct:    1 MLRRMDQDRNGKIEGSEL-EGRGGEFVRRILTGTGMENSNSINVEDASKAVQ-KAREKREAG---VESASM----SFGAASDAKPAAGFDAPPPVNGK--SLEER--------YGKTIVDQVMGIMSRYDKNKNHYLDGPEWSEVRWR-DDPTQDDKDKDGRLSIEELCLRVVRSNGGQSS-----------------------------------------GRDEGRSEDRGSGDRGVDARFRLYAESLLKQNDRNGNGVLEKDEWSRLRGNPSDYDKNGDGKITVEELTQRSESFGQGRSSRSVSNEKPKQETYRFLTATERLPKGL---PDWFLSN-DQDADGQIMMHEFTTSWSTSKVSEFNEYD 304
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BLAST of mRNA_P-canaliculata_contig93171.23327.1 vs. uniprot
Match: A0A354P604_9PLAN (Calcium sensor EFh n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A354P604_9PLAN)

HSP 1 Score: 58.5 bits (140), Expect = 1.030e-5
Identity = 50/181 (27.62%), Postives = 82/181 (45.30%), Query Frame = 1 
Query:    1 DFLQKLDIDKSNVVEVNELTSGRTR----RFLGDMGVN---TKTAIRIDETVKRVEAKAAEKREDARKDFEDKSRPKLNSFGAAPDNYGVDSFGVSDK--TEPQIASFEERVTGLKESDFDEAVLKDAKSIMHTYDRDESKFLEGDEIKRIRWQAPDPSENDLNSDGRLSLFELAQRIQER 516
            +++++LD + +  +E NEL S R+R    RF  D G++   T +  R++E               AR+ F+ +      + G       +  F   +     P+  S + R    K        L  A+ ++  YDR+    L  DEI+  RW+ P P + DL+ DG+L+L ELAQR   R
Sbjct:   38 EWVRRLDANNNGYIEPNEL-SDRSRAFFDRFARDAGIDLNRTNSIARLEEA--------------ARRFFDSRKTDSSTAIGTPQVTSSIKGFEPDEGRFVVPEFGSPQVRFPYTKSH------LSSAQELLTRYDRNRDGVLTFDEIESSRWRGPSPQDCDLDRDGKLTLVELAQRYSRR 197
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig93171.23327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI001CCD10513.340e-1125.33hypothetical protein n=1 Tax=Bremerella volcania T... [more]
A0A518CAB4_9BACT1.850e-1024.93EF hand n=1 Tax=Bremerella volcania TaxID=2527984 ... [more]
A0A7V8V2W6_9BACT5.140e-932.78Uncharacterized protein n=1 Tax=Bremerella alba Ta... [more]
A0A2S8F0I4_9BACT3.040e-824.93EF-hand domain-containing protein n=2 Tax=Pirellul... [more]
A0A354P604_9PLAN1.030e-527.62Calcium sensor EFh n=1 Tax=Planctomycetaceae bacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig93171contigP-canaliculata_contig93171:3..1166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score69.3
Seed ortholog evalue4.2e-09
Seed eggNOG ortholog530564.Psta_3859
EggNOG free text desc.EF hand
EggNOG OGs2J0WB@203682,COG5126@1,COG5126@2
COG Functional cat.DTZ
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1098
Cds size1098
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817300.9539328-CDS-P-canaliculata_contig93171:2..5851622817300.9539328-CDS-P-canaliculata_contig93171:2..585Pelvetia canaliculata dioeciousCDSP-canaliculata_contig93171 3..585 +
1693495208.9222822-CDS-P-canaliculata_contig93171:2..5851693495208.9222822-CDS-P-canaliculata_contig93171:2..585Pelvetia canaliculata dioeciousCDSP-canaliculata_contig93171 3..585 +
1622817300.968069-CDS-P-canaliculata_contig93171:651..11661622817300.968069-CDS-P-canaliculata_contig93171:651..1166Pelvetia canaliculata dioeciousCDSP-canaliculata_contig93171 652..1166 +
1693495208.9356143-CDS-P-canaliculata_contig93171:651..11661693495208.9356143-CDS-P-canaliculata_contig93171:651..1166Pelvetia canaliculata dioeciousCDSP-canaliculata_contig93171 652..1166 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig93171.23327.1prot_P-canaliculata_contig93171.23327.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig93171 3..1166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig93171.23327.1

>prot_P-canaliculata_contig93171.23327.1 ID=prot_P-canaliculata_contig93171.23327.1|Name=mRNA_P-canaliculata_contig93171.23327.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=366bp
DFLQKLDIDKSNVVEVNELTSGRTRRFLGDMGVNTKTAIRIDETVKRVEA
KAAEKREDARKDFEDKSRPKLNSFGAAPDNYGVDSFGVSDKTEPQIASFE
ERVTGLKESDFDEAVLKDAKSIMHTYDRDESKFLEGDEIKRIRWQAPDPS
ENDLNSDGRLSLFELAQRIQERTDSKSKKDSRSDRDRESRDDRGNSSSSS
DSKGSQSGRDSRESNSDSSSGTKSNTSSQGSTTNKADAYQAYVDGLFKKY
DRDKDSKLSQDELKKMRRPLKGDADEDGFVTKFEATKYLTDSAAGKRSSG
SSKSGSSSQSASSRSTDRRSSSSSSSKPRGSLSDLDTNGDGQIQMSEFST
QWDEETLQSFRKSDTD
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mRNA from alignment at P-canaliculata_contig93171:3..1166+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig93171.23327.1 ID=mRNA_P-canaliculata_contig93171.23327.1|Name=mRNA_P-canaliculata_contig93171.23327.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1164bp|location=Sequence derived from alignment at P-canaliculata_contig93171:3..1166+ (Pelvetia canaliculata dioecious)
GATTTTCTCCAAAAGCTAGACATCGATAAAAGTAACGTCGTTGAAGTCAA
TGAACTTACTAGCGGCCGCACCCGACGGTTTCTTGGCGATATGGGCGTCA
ATACAAAAACCGCGATTCGAATCGATGAAACGGTAAAACGAGTCGAAGCC
AAAGCGGCCGAAAAACGCGAGGACGCGAGAAAAGATTTCGAAGACAAAAG
CCGGCCGAAACTGAATTCGTTTGGAGCCGCGCCCGACAACTACGGCGTGG
ACAGCTTTGGCGTCAGTGACAAAACGGAACCACAGATTGCCAGTTTTGAA
GAACGAGTAACCGGGCTTAAAGAATCTGATTTTGATGAGGCGGTTCTCAA
GGATGCGAAAAGCATCATGCATACCTACGATCGTGACGAAAGCAAATTTC
TAGAAGGCGATGAGATCAAACGCATCCGTTGGCAGGCGCCGGACCCATCT
GAAAACGATCTTAATAGCGACGGGCGTCTGTCGCTGTTCGAATTAGCGCA
ACGAATCCAGGAAAGAACGGATAGTAAATCCAAAAAAGATAGCCGAAGTG
ATCGAGATCGGGAAAGCCGAGACGATCGCGGAAGTGAAGGGCGACGTTAT
GAAGGCAGTCGTGGTAGCCGCGGGTACGGTCGCTACGGTAGTAATTCAGA
TTCAAGTTCGTCATCCGATTCAAAGGGTTCGCAATCGGGCCGAGATTCTC
GCGAGAGTAATTCAGACTCGTCCAGCGGAACGAAATCTAACACATCCTCT
CAAGGCTCAACAACAAACAAGGCCGACGCCTATCAGGCTTACGTCGACGG
GCTGTTTAAAAAGTATGATCGGGATAAGGACAGCAAACTGTCACAGGATG
AACTGAAGAAAATGCGTCGTCCGCTTAAGGGGGACGCTGACGAGGATGGG
TTTGTCACAAAATTCGAAGCGACCAAATATTTGACCGACAGTGCGGCAGG
GAAGCGGTCAAGCGGCAGTAGTAAGAGCGGTTCTTCTTCGCAATCAGCGT
CCAGTCGCTCAACCGACCGTCGGTCTAGCAGCAGCAGTTCATCAAAGCCA
CGAGGATCGCTTAGCGACCTTGATACTAATGGAGATGGTCAGATTCAAAT
GTCTGAATTCTCCACTCAGTGGGACGAAGAGACTTTGCAGAGCTTCCGCA
AGTCGGACACCGAT
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Coding sequence (CDS) from alignment at P-canaliculata_contig93171:3..1166+

>mRNA_P-canaliculata_contig93171.23327.1 ID=mRNA_P-canaliculata_contig93171.23327.1|Name=mRNA_P-canaliculata_contig93171.23327.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2196bp|location=Sequence derived from alignment at P-canaliculata_contig93171:3..1166+ (Pelvetia canaliculata dioecious)
GATTTTCTCCAAAAGCTAGACATCGATAAAAGTAACGTCGTTGAAGTCAA
TGAACTTACTAGCGGCCGCACCCGACGGTTTCTTGGCGATATGGGCGTCA
ATACAAAAACCGCGATTCGAATCGATGAAACGGTAAAACGAGTCGAAGCC
AAAGCGGCCGAAAAACGCGAGGACGCGAGAAAAGATTTCGAAGACAAAAG
CCGGCCGAAACTGAATTCGTTTGGAGCCGCGCCCGACAACTACGGCGTGG
ACAGCTTTGGCGTCAGTGACAAAACGGAACCACAGATTGCCAGTTTTGAA
GAACGAGTAACCGGGCTTAAAGAATCTGATTTTGATGAGGCGGTTCTCAA
GGATGCGAAAAGCATCATGCATACCTACGATCGTGACGAAAGCAAATTTC
TAGAAGGCGATGAGATCAAACGCATCCGTTGGCAGGCGCCGGACCCATCT
GAAAACGATCTTAATAGCGACGGGCGTCTGTCGCTGTTCGAATTAGCGCA
ACGAATCCAGGAAAGAACGGATAGTAAATCCAAAAAAGATAGCCGAAGTG
ATCGAGATCGGGAAAGCCGAGACGATCGCGGAAGATTTTCTCCAAAAGCT
AGACATCGATAAAAGTAACGTCGTTGAAGTCAATGAACTTACTAGCGGCC
GCACCCGACGGTTTCTTGGCGATATGGGCGTCAATACAAAAACCGCGATT
CGAATCGATGAAACGGTAAAACGAGTCGAAGCCAAAGCGGCCGAAAAACG
CGAGGACGCGAGAAAAGATTTCGAAGACAAAAGCCGGCCGAAACTGAATT
CGTTTGGAGCCGCGCCCGACAACTACGGCGTGGACAGCTTTGGCGTCAGT
GACAAAACGGAACCACAGATTGCCAGTTTTGAAGAACGAGTAACCGGGCT
TAAAGAATCTGATTTTGATGAGGCGGTTCTCAAGGATGCGAAAAGCATCA
TGCATACCTACGATCGTGACGAAAGCAAATTTCTAGAAGGCGATGAGATC
AAACGCATCCGTTGGCAGGCGCCGGACCCATCTGAAAACGATCTTAATAG
CGACGGGCGTCTGTCGCTGTTCGAATTAGCGCAACGAATCCAGGAAAGAA
CGGATAGTAAATCCAAAAAAGATAGCCGAAGTGATCGAGATCGGGAAAGC
CGAGACGATCGCGGAAATTCAAGTTCGTCATCCGATTCAAAGGGTTCGCA
ATCGGGCCGAGATTCTCGCGAGAGTAATTCAGACTCGTCCAGCGGAACGA
AATCTAACACATCCTCTCAAGGCTCAACAACAAACAAGGCCGACGCCTAT
CAGGCTTACGTCGACGGGCTGTTTAAAAAGTATGATCGGGATAAGGACAG
CAAACTGTCACAGGATGAACTGAAGAAAATGCGTCGTCCGCTTAAGGGGG
ACGCTGACGAGGATGGGTTTGTCACAAAATTCGAAGCGACCAAATATTTG
ACCGACAGTGCGGCAGGGAAGCGGTCAAGCGGCAGTAGTAAGAGCGGTTC
TTCTTCGCAATCAGCGTCCAGTCGCTCAACCGACCGTCGGTCTAGCAGCA
GCAGTTCATCAAAGCCACGAGGATCGCTTAGCGACCTTGATACTAATGGA
GATGGTCAGATTCAAATGTCTGAATTCTCCACTCAGTGGGACGAAGAGAC
TTTGCAGAGCTTCCGCAAGTCGGACACCGATATTCAAGTTCGTCATCCGA
TTCAAAGGGTTCGCAATCGGGCCGAGATTCTCGCGAGAGTAATTCAGACT
CGTCCAGCGGAACGAAATCTAACACATCCTCTCAAGGCTCAACAACAAAC
AAGGCCGACGCCTATCAGGCTTACGTCGACGGGCTGTTTAAAAAGTATGA
TCGGGATAAGGACAGCAAACTGTCACAGGATGAACTGAAGAAAATGCGTC
GTCCGCTTAAGGGGGACGCTGACGAGGATGGGTTTGTCACAAAATTCGAA
GCGACCAAATATTTGACCGACAGTGCGGCAGGGAAGCGGTCAAGCGGCAG
TAGTAAGAGCGGTTCTTCTTCGCAATCAGCGTCCAGTCGCTCAACCGACC
GTCGGTCTAGCAGCAGCAGTTCATCAAAGCCACGAGGATCGCTTAGCGAC
CTTGATACTAATGGAGATGGTCAGATTCAAATGTCTGAATTCTCCACTCA
GTGGGACGAAGAGACTTTGCAGAGCTTCCGCAAGTCGGACACCGAT
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