mRNA_P-canaliculata_contig106745.897.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig106745.897.1
Unique NamemRNA_P-canaliculata_contig106745.897.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig106745.897.1 vs. uniprot
Match: UPI000994E8F3 (FAD-binding protein n=1 Tax=Alkalihalobacterium alkalinitrilicum TaxID=427920 RepID=UPI000994E8F3)

HSP 1 Score: 75.9 bits (185), Expect = 3.120e-12
Identity = 41/77 (53.25%), Postives = 49/77 (63.64%), Query Frame = 1
Query:    1 QDHSGPNCGSVFRFFTPKIVALIRGRTVLGAVFSKKTDNWITNRSKSPLGILLLIRFTWFIHFVLRRKCSIEIRIIK 231
            QD+  PNCGSVF      I+ L+RG  V  A FS KT NWI NRS+SP+ IL LI     IHFVL +KC IE+  +K
Sbjct:  210 QDNVLPNCGSVFNTAYGPIIWLVRGLRVGKAHFSSKTWNWINNRSRSPIPILSLILIVRIIHFVLLKKCKIELIRVK 286          
BLAST of mRNA_P-canaliculata_contig106745.897.1 vs. uniprot
Match: A0A6I5RA98_9CYAN (UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Leptolyngbya sp. SIO1E4 TaxID=2607768 RepID=A0A6I5RA98_9CYAN)

HSP 1 Score: 71.6 bits (174), Expect = 9.910e-11
Identity = 33/77 (42.86%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    1 QDHSGPNCGSVFRFFTPKIVALIRGRTVLGAVFSKKTDNWITNRSKSPLGILLLIRFTWFIHFVLRRKCSIEIRIIK 231
            QD+S P+CGSVF+ F  +I++ ++G  V  A FS+KT+NWI+N+S SP+ I +LI     +H + R+K  +EI +++
Sbjct:  214 QDYSAPSCGSVFKKFDYQILSKLKGYRVGKAKFSEKTNNWISNKSDSPINIKILILIAKLLHAIKRKKPVLEIIVVE 290          
BLAST of mRNA_P-canaliculata_contig106745.897.1 vs. uniprot
Match: K9QZ60_NOSS7 (UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Nostoc sp. (strain ATCC 29411 / PCC 7524) TaxID=28072 RepID=K9QZ60_NOSS7)

HSP 1 Score: 70.9 bits (172), Expect = 1.650e-10
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    1 QDHSGPNCGSVFRFFTPKIVALIRGRTVLGAVFSKKTDNWITNRSKSPLGILLLIRFTWFIHFVLRRKCSIEI 219
            QDHS PNCGSVF+     I+ +++G ++  A FS KT NWI N+S+S L IL+LI     +HF+  +K  +EI
Sbjct:  203 QDHSAPNCGSVFKLSYYPIMKIMKGFSIGEATFSPKTANWIINKSQSSLPILILILIAKILHFLAFKKVKLEI 275          
BLAST of mRNA_P-canaliculata_contig106745.897.1 vs. uniprot
Match: UPI00056B851A (FAD-binding protein n=1 Tax=Leptolyngbya sp. KIOST-1 TaxID=1229172 RepID=UPI00056B851A)

HSP 1 Score: 68.6 bits (166), Expect = 1.110e-9
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 QDHSGPNCGSVFRFFTPKIVALIRGRTVLGAVFSKKTDNWITNRSKSPLGILLLIRFTWFIHFVLRRKCSIEIRII 228
            QD++ PNCGSVF    PKI+  I+G  +  A FSKKT NWI+N+S + + I LLI     +H V ++K  +EI ++
Sbjct:  209 QDNAIPNCGSVFSSADPKILESIKGLRIGEARFSKKTSNWISNKSSNYIYIYLLIVLAKILHLVKKKKAKLEIILV 284          
BLAST of mRNA_P-canaliculata_contig106745.897.1 vs. uniprot
Match: K9F521_9CYAN (UDP-N-acetylenolpyruvoylglucosamine reductase n=2 Tax=Leptolyngbyaceae TaxID=1890438 RepID=K9F521_9CYAN)

HSP 1 Score: 68.2 bits (165), Expect = 1.460e-9
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    1 QDHSGPNCGSVFRFFTPKIVALIRGRTVLGAVFSKKTDNWITNRSKSPLGILLLIRFTWFIHFVLRRKCSIEIRIIK 231
            QD+S PNCGSVF+    +I+  + G ++  + FSKKT NWI N+SKS L I  LI     +H  L +K  +E+ +I+
Sbjct:  206 QDYSAPNCGSVFKQADYRILRKLEGLSIGQSAFSKKTTNWILNKSKSSLPIRFLISMAQILHAFLGKKIELEVIVIE 282          
BLAST of mRNA_P-canaliculata_contig106745.897.1 vs. uniprot
Match: A0A7X0H802_9BACT (UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0H802_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 1.240e-7
Identity = 29/77 (37.66%), Postives = 46/77 (59.74%), Query Frame = 1
Query:    1 QDHSGPNCGSVFRFFTPKIVALIRGRTVLGAVFSKKTDNWITNRSKSPLGILLLIRFTWFIHFVLRRKCSIEIRIIK 231
            QDHS PNCGSVF+     I+  I+G  +  A +S KT NW+ +   SP  ++ LIR+   +H +  R+  +E+ ++K
Sbjct:  232 QDHSAPNCGSVFKEAKMGILGRIQGTRLGSAQYSPKTINWLLSHGTSPRPMIWLIRYAKAVHLLFGRRAVLELIVVK 308          
BLAST of mRNA_P-canaliculata_contig106745.897.1 vs. uniprot
Match: UPI0016827905 (FAD-binding protein n=1 Tax=Cyanobacteria TaxID=1117 RepID=UPI0016827905)

HSP 1 Score: 61.2 bits (147), Expect = 3.780e-7
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    1 QDHSGPNCGSVFRFFTPKIVALIRGRTVLGAVFSKKTDNWITNRSKSPLGILLLIRFTWFIHFVL--RRKCSIEIRII 228
            QD+ GPNCGSVFR     ++  ++G +   A FS+KT NWI NRSKS   I  LI     +H +   R+K  +EI ++
Sbjct:  216 QDNVGPNCGSVFRSANFSLLRKLQGFSFNQASFSRKTPNWILNRSKSSSSIKALIFLAGMLHLIKGDRKKLKLEIILV 293          
BLAST of mRNA_P-canaliculata_contig106745.897.1 vs. uniprot
Match: A0A328FBH9_9DELT (UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=A0A328FBH9_9DELT)

HSP 1 Score: 59.7 bits (143), Expect = 1.160e-6
Identity = 34/77 (44.16%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    4 DHSGPNCGSVFRFFTPKIVALIRGRTVLGAVFSKKTDNWITN-RSKSPLGILLLIRFTWFIHFVLRRKCSIEIRIIK 231
            D S P+CGSVF    P ++ L++G    GA+FSKKT NWI+N  + S   IL LI+    IH +    C  EIR +K
Sbjct:  207 DPSKPSCGSVFCQANPIVMRLVKGMRCGGAIFSKKTPNWISNIDNASAKDILTLIKRVKCIHKLFFFSCKTEIRFLK 283          
BLAST of mRNA_P-canaliculata_contig106745.897.1 vs. uniprot
Match: UPI0019C393D1 (FAD-binding protein n=1 Tax=Gloeobacterales cyanobacterium ES-bin-141 TaxID=2812628 RepID=UPI0019C393D1)

HSP 1 Score: 59.7 bits (143), Expect = 1.240e-6
Identity = 31/73 (42.47%), Postives = 42/73 (57.53%), Query Frame = 1
Query:    1 QDHSGPNCGSVFRFFTPKIVALIRGRTVLGAVFSKKTDNWITNRSKSPLGILLLIRFTWFIHFVLRRKCSIEI 219
            QDHS PNCGSVF+      + L RG  V G  FS KT NWI N+S+S   I+ L+     +H +  +K  +E+
Sbjct:  219 QDHSAPNCGSVFK--KGYKLRLFRGLRVGGTSFSSKTSNWIVNKSESSFQIVALVTVIKGLHKIFGKKAVVEL 289          
BLAST of mRNA_P-canaliculata_contig106745.897.1 vs. uniprot
Match: UPI000EF7977F (hypothetical protein n=1 Tax=Mucilaginibacter kameinonensis TaxID=452286 RepID=UPI000EF7977F)

HSP 1 Score: 59.7 bits (143), Expect = 2.120e-6
Identity = 50/185 (27.03%), Postives = 84/185 (45.41%), Query Frame = 2
Query:  242 EKVWNSPTWTTLFTQIVAPLRFLLLTPLVLTRFSALELDVFYLLASTTILFSLFQNRFSNVFERMLSFAYGGATDLGKWTGDKAPSSGDPNWELFKEAYLALGVLLIITCLPSLLLSVGLMWVSVGSLV---DYSYDDKQLWLGAMLGAVSPIVSFLMLRPYMALRSTGKIAFQNRLTTITNVAS 787
            +K W+SPT  T  +     L   L+ P++L+RF+A ++ ++YL ++   L  L    F   F RM+++  GGA D+  +   +  + G  NW+L    +    V+ +I    +LL  + L+ +   SLV       D    WL   +  +   + F        L    KIA   R  TIT++ S
Sbjct:   12 KKCWDSPTLNTWLSYSTKALSLFLVLPMLLSRFTAPQVALWYLFSTVISLQGLADMGFKVTFIRMIAYGAGGAKDIENYATSEVETHGVHNWDLISRIF---SVMRVIYKWVTLLFCIILLTLGTWSLVKPISLVSDPLDAWLAWGVIIIISCIKFYGTIYSNYLEGLNKIAIVRRWETITSIGS 193          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig106745.897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
UPI000994E8F33.120e-1253.25FAD-binding protein n=1 Tax=Alkalihalobacterium al... [more]
A0A6I5RA98_9CYAN9.910e-1142.86UDP-N-acetylenolpyruvoylglucosamine reductase n=1 ... [more]
K9QZ60_NOSS71.650e-1046.58UDP-N-acetylenolpyruvoylglucosamine reductase n=1 ... [more]
UPI00056B851A1.110e-944.74FAD-binding protein n=1 Tax=Leptolyngbya sp. KIOST... [more]
K9F521_9CYAN1.460e-942.86UDP-N-acetylenolpyruvoylglucosamine reductase n=2 ... [more]
A0A7X0H802_9BACT1.240e-737.66UDP-N-acetylenolpyruvoylglucosamine reductase n=1 ... [more]
UPI00168279053.780e-742.31FAD-binding protein n=1 Tax=Cyanobacteria TaxID=11... [more]
A0A328FBH9_9DELT1.160e-644.16UDP-N-acetylenolpyruvoylglucosamine reductase n=1 ... [more]
UPI0019C393D11.240e-642.47FAD-binding protein n=1 Tax=Gloeobacterales cyanob... [more]
UPI000EF7977F2.120e-627.03hypothetical protein n=1 Tax=Mucilaginibacter kame... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig106745contigP-canaliculata_contig106745:42..930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size889
Cds size456
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.574167-CDS-P-canaliculata_contig106745:41..4971622815637.574167-CDS-P-canaliculata_contig106745:41..497Pelvetia canaliculata dioeciousCDSP-canaliculata_contig106745 42..497 -
1693494180.0612862-CDS-P-canaliculata_contig106745:41..4971693494180.0612862-CDS-P-canaliculata_contig106745:41..497Pelvetia canaliculata dioeciousCDSP-canaliculata_contig106745 42..497 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.5851758-UTR-P-canaliculata_contig106745:497..9301622815637.5851758-UTR-P-canaliculata_contig106745:497..930Pelvetia canaliculata dioeciousUTRP-canaliculata_contig106745 498..930 -
1693494180.0764372-UTR-P-canaliculata_contig106745:497..9301693494180.0764372-UTR-P-canaliculata_contig106745:497..930Pelvetia canaliculata dioeciousUTRP-canaliculata_contig106745 498..930 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig106745.897.1prot_P-canaliculata_contig106745.897.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig106745 42..497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig106745.897.1

>prot_P-canaliculata_contig106745.897.1 ID=prot_P-canaliculata_contig106745.897.1|Name=mRNA_P-canaliculata_contig106745.897.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=152bp
MLSFAYGGATDLGKWTGDKAPSSGDPNWELFKEAYLALGVLLIITCLPSL
LLSVGLMWVSVGSLVDYSYDDKQLWLGAMLGAVSPIVSFLMLRPYMALRS
TGKIAFQNRLTTITNVASTCVCALVVLLGGRLVAIISTQLIFTALARWLM
IR
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mRNA from alignment at P-canaliculata_contig106745:42..930-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig106745.897.1 ID=mRNA_P-canaliculata_contig106745.897.1|Name=mRNA_P-canaliculata_contig106745.897.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=889bp|location=Sequence derived from alignment at P-canaliculata_contig106745:42..930- (Pelvetia canaliculata dioecious)
CAAGATCACAGCGGACCGAATTGCGGATCTGTATTTCGATTTTTTACACC GAAAATTGTAGCTCTTATCCGTGGAAGAACTGTACTGGGCGCCGTGTTTT CGAAGAAGACCGATAACTGGATCACAAATCGTTCCAAATCGCCGCTCGGT ATCTTACTTTTGATTCGCTTTACTTGGTTTATACACTTTGTCTTGCGAAG AAAGTGTTCAATTGAAATACGCATCATTAAATAGCTGTTTCGAGAAAGTA TGGAATTCCCCTACTTGGACAACGTTGTTTACACAGATTGTTGCTCCACT TAGGTTTCTGCTTCTTACGCCACTAGTTTTAACACGATTCTCGGCGCTGG AATTAGATGTTTTCTATCTTCTTGCTTCGACCACAATACTGTTCAGTCTT TTTCAGAATCGGTTTTCCAATGTATTCGAAAGAATGCTGAGCTTCGCTTA CGGCGGAGCGACGGACCTAGGCAAATGGACAGGCGATAAAGCTCCTTCAT CAGGCGATCCCAACTGGGAACTTTTTAAGGAAGCCTATCTTGCCCTAGGT GTACTACTAATTATTACCTGCCTGCCGTCTTTGCTTTTGTCTGTCGGACT GATGTGGGTTTCGGTGGGTTCACTTGTTGACTATAGCTATGATGACAAAC AGTTATGGCTCGGCGCAATGCTCGGGGCCGTTAGTCCGATCGTCTCTTTC TTGATGTTACGGCCGTATATGGCATTGCGATCAACTGGAAAAATCGCTTT TCAAAACCGCCTTACTACAATTACGAACGTGGCTTCAACTTGCGTTTGTG CTCTAGTTGTTCTTTTGGGAGGACGATTAGTTGCTATCATCAGTACGCAA CTGATTTTCACTGCCTTAGCTCGCTGGCTCATGATTCGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig106745:42..930-

>mRNA_P-canaliculata_contig106745.897.1 ID=mRNA_P-canaliculata_contig106745.897.1|Name=mRNA_P-canaliculata_contig106745.897.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at P-canaliculata_contig106745:42..930- (Pelvetia canaliculata dioecious)
ATGCTGAGCTTCGCTTACGGCGGAGCGACGGACCTAGGCAAATGGACAGG
CGATAAAGCTCCTTCATCAGGCGATCCCAACTGGGAACTTTTTAAGGAAG
CCTATCTTGCCCTAGGTGTACTACTAATTATTACCTGCCTGCCGTCTTTG
CTTTTGTCTGTCGGACTGATGTGGGTTTCGGTGGGTTCACTTGTTGACTA
TAGCTATGATGACAAACAGTTATGGCTCGGCGCAATGCTCGGGGCCGTTA
GTCCGATCGTCTCTTTCTTGATGTTACGGCCGTATATGGCATTGCGATCA
ACTGGAAAAATCGCTTTTCAAAACCGCCTTACTACAATTACGAACGTGGC
TTCAACTTGCGTTTGTGCTCTAGTTGTTCTTTTGGGAGGACGATTAGTTG
CTATCATCAGTACGCAACTGATTTTCACTGCCTTAGCTCGCTGGCTCATG
ATTCGAATGCTGAGCTTCGCTTACGGCGGAGCGACGGACCTAGGCAAATG
GACAGGCGATAAAGCTCCTTCATCAGGCGATCCCAACTGGGAACTTTTTA
AGGAAGCCTATCTTGCCCTAGGTGTACTACTAATTATTACCTGCCTGCCG
TCTTTGCTTTTGTCTGTCGGACTGATGTGGGTTTCGGTGGGTTCACTTGT
TGACTATAGCTATGATGACAAACAGTTATGGCTCGGCGCAATGCTCGGGG
CCGTTAGTCCGATCGTCTCTTTCTTGATGTTACGGCCGTATATGGCATTG
CGATCAACTGGAAAAATCGCTTTTCAAAACCGCCTTACTACAATTACGAA
CGTGGCTTCAACTTGCGTTTGTGCTCTAGTTGTTCTTTTGGGAGGACGAT
TAGTTGCTATCATCAGTACGCAACTGATTTTCACTGCCTTAGCTCGCTGG
CTCATGATTCGA
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