mRNA_P-canaliculata_contig10535.730.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10535.730.1
Unique NamemRNA_P-canaliculata_contig10535.730.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig10535.730.1 vs. uniprot
Match: A0A6H5KJ41_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ41_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.030e-26
Identity = 84/246 (34.15%), Postives = 126/246 (51.22%), Query Frame = 1
Query: 1195 DGLGHGYVSSFRPRLLNSDELNLIRAHLRSCRTNTADHRRGTTSCGSDVIRELAHKSGY-----IEVNQSEEGGNELTQLGCDNENDIFSLETFVEFCHWWTPVSTTLSLIPNEWASLNPVRVQGFMGIMQAKEQLLKTKRPGVFLLRFSESSPGRLVLTYTSK----ASRDMSS-GRARKNGSEGCSVVVEHSYITVNPDRR--WKLHYGKGGDGNSYSSLRDLVNSKVDLQTLYPSFAKGNAFE 1896
            +G G+G V++ + R +N +EL  +R  L++        ++       + +R+     GY     + +  S        + G +   ++ SLE FVEF  WW P+ TTLSL+ N+WAS NP RV GF+  + A+ QLL+ +R G FLLRFSES PG LV+++T      A RD S    A  +     S+ V+H  + V   RR  W     + G    Y SL DLV +   ++ LYP   K +AF+
Sbjct:   39 EGNGYGAVNTPQVRWMNEEELAFVRGVLKT--------KQEKVRLKQEKLRQQLASRGYSGTELVSIGSSGAADAAFGRDGGNGNGNVISLEAFVEFSLWWAPLMTTLSLLRNDWASTNPTRVHGFISRIAAERQLLERER-GTFLLRFSESQPGELVVSFTEHVTQAAPRDSSMLASAPCSRPRSQSMCVKHCLVEV---RRGGWCYIEVEQGSKVPYPSLHDLVLACSSMEVLYPDVRKEDAFD 272          
BLAST of mRNA_P-canaliculata_contig10535.730.1 vs. uniprot
Match: D7FNX8_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX8_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 3.000e-26
Identity = 117/384 (30.47%), Postives = 165/384 (42.97%), Query Frame = 1
Query:  883 ERANKIAYEAGLRDNRAKSVWVGATYKA-------NAGGGSVSGDDD-----------AYHRSVRWGYLSRALQLYLSNLQTIGGDAMLSVDSA-YSMDIRDNGKTFSSERCSSSEASWYARSDGLGHGYVSSFRPRLLNSDELNLIRAHLRSCRTNTADHRRGTTSCGSDVIRELAHKSGYIEVNQSEEGGNELTQLGCDNE------------------NDIFSLETFVEFCHWWTPVSTTLSLIPNEWASLNPVRVQGFMGIMQAKEQLLKTKRPGVFLLRFSESSPGRLVLTYTS-------KASRDMSSGRARKNGSEGCSVVVEHSYITVNPDRR--WKLHYGKGGDGNSYSSLRDLVNSKVDLQTLYPSFAKGNAFE 1896
            +RA   A  AGL D   + VWV AT  A       + GGGS +G                +  V W YL R L  +L    TI       VD   Y                   +AS      G G+G V++ + R +N +EL  +R  L++        ++       + +R+     GY         G EL  +G                       D+ SL+ FVEF  WW P+  TLSL+ N+WAS NP RV GF+  + A+ QLL+ +R G FLLRFSES PG LV+++T        +AS  ++S    +  S+  S+ V+H  + V   RR  W     + G    Y SL DLV +   +Q LYP   K +AF+
Sbjct:  595 KRAWDTARTAGLMDRGCRLVWVKATTNALLNGWTYDGGGGSDNGGFGWPAEGAGAGGVTNYDCVPWDYLRRGLMQHLCGKLTIPSSHDEVVDEGPYGW---------------RGDASSVGVGVGNGYGAVNTPQVRWMNEEELAFVRGVLKA--------KQEKVRLKQEKLRQQRASRGYA--------GTELVSIGSSGAADAASGRXXXXXXXXXXXXDVISLDAFVEFSLWWAPLMPTLSLLRNDWASTNPTRVHGFISRIAAERQLLERER-GTFLLRFSESQPGELVVSFTEHVTQAAPRASSMLTSAPRSRPRSQ--SMCVKHCLVEV---RRGGWCYIEVEQGSKVPYPSLHDLVLACSSMQVLYPDVRKEDAFD 941          
BLAST of mRNA_P-canaliculata_contig10535.730.1 vs. uniprot
Match: D7FNY4_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY4_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.310e-19
Identity = 64/165 (38.79%), Postives = 88/165 (53.33%), Query Frame = 1
Query: 1399 GNELTQLGCDNENDIFSLETFVEFCHWWTPVSTTLSLIPNEWASLNPVRVQGFMGIMQAKEQLLKTKRPGVFLLRFSESSPGRLVLTYTSKASRDMSSGRARKNGSEGCSVVVEHSYITVNPDRRWKLHYGKGGDGNSYSSLRDLVNSKVDLQTLYPSFAKGNAF 1893
            G+E  ++      D  S+E F +F  WW P+ +TL +I N+WA   PVRV GFM  + AK +LL  +  G FLLRFSES  G LV+++T  +   +S GR         S+ V+HS + V    R  +   KGG    Y+SL D V    +L+ LYP   K  AF
Sbjct:  742 GDECPEVDGGCRYDFISVEAFAKFSQWWAPLISTLGIIRNDWARTRPVRVHGFMSRLAAK-RLLMQRECGTFLLRFSESKMGALVISFTQPS---VSPGRR--------SLSVKHSLVEVKWGGRCCIQAEKGGM-RCYASLHDFVRRIPELKKLYPDIPKEEAF 893          
BLAST of mRNA_P-canaliculata_contig10535.730.1 vs. uniprot
Match: A0A6H5JPT3_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT3_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 7.720e-19
Identity = 69/198 (34.85%), Postives = 96/198 (48.48%), Query Frame = 1
Query: 1399 GNELTQLGCDNENDIFSLETFVEFCHWWTPVSTTLSLIPNEWASLNPVRVQGFMGIMQAKEQLLKTKRPGVFLLRFSESSPGRLVLTYT---------SKASRDM-----SSGRAR-------------------KNGSEGCSVVVEHSYITVNPDRRWKLHYGKGGDGNSYSSLRDLVNSKVDLQTLYPSFAKGNAF 1893
            G+E T++G D  +D  S+E F  F  WW P+  TL +I N+WA+  PVRV GFM  + +K +LL  +  G FLLRFSES  G LV+++T         S+ SR +      +GR                     ++G    S+ V+HS + V    R  +   KGG    Y SL D V    +L+ LYP   K  AF
Sbjct:  245 GDECTEVGGDGRDDFVSVEAFANFSQWWAPLMATLGIIRNDWATTRPVRVHGFMSRVASK-RLLMQRECGTFLLRFSESRMGALVISFTQPSVSVSRLSRISRCLVPFISCAGRLACCLQGSPINPRIVLQQFQLRSGRR--SLSVKHSLVEVKWGGRCCIQAEKGGM-RCYGSLHDFVRQIPELKKLYPDIPKEEAF 438          
BLAST of mRNA_P-canaliculata_contig10535.730.1 vs. uniprot
Match: D7FNY6_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY6_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 3.130e-16
Identity = 54/163 (33.13%), Postives = 72/163 (44.17%), Query Frame = 1
Query: 1405 ELTQLGCDNENDIFSLETFVEFCHWWTPVSTTLSLIPNEWASLNPVRVQGFMGIMQAKEQLLKTKRPGVFLLRFSESSPGRLVLTYTSKASRDMSSGRARKNGSEGCSVVVEHSYITVNPDRRWKLHYGKGGDGNSYSSLRDLVNSKVDLQTLYPSFAKGNAF 1893
            + T+   D   D  S+ETF +F  WW P+  TL +I N+WA   PV V GF+G ++  E L + +  G FLLRFSES PG+LV+                       S    HS + V    R  +   + G    Y SL DLV     L+ LY        F
Sbjct:  913 DCTEYRLDGRYDFISVETFAKFSRWWVPLMGTLGIIRNDWARTRPVFVHGFIGRLETDENLRRAR--GAFLLRFSESHPGKLVI-----------------------SRAYHHSLVEVTEGGRCYMTVNQQGTRREYESLHDLVTQNGQLRHLYQDIPMEQVF 1050          
BLAST of mRNA_P-canaliculata_contig10535.730.1 vs. uniprot
Match: A0A6H5JN51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN51_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 3.730e-5
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1
Query:    1 QKAVKLLLDPEAACLSFVGERGIGKRERALQAWNYVRARGGFGFSAMFYANC 156
            Q+ V+LLL+P+AAC++  GE G GK ERA+QA +YVR R    F +  +A+C
Sbjct:   73 QQVVRLLLNPQAACVTVTGEHGSGKTERAIQACDYVRER--HHFDSFLWADC 122          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10535.730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KJ41_9PHAE1.030e-2634.15SH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FNX8_ECTSI3.000e-2630.47SH2 domain containing protein n=1 Tax=Ectocarpus s... [more]
D7FNY4_ECTSI1.310e-1938.79SH2 domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JPT3_9PHAE7.720e-1934.85SH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FNY6_ECTSI3.130e-1633.13SH2 domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JN51_9PHAE3.730e-550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10535contigP-canaliculata_contig10535:1934..6415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue3.8e-28
Seed eggNOG ortholog2880.D7FNX8
EggNOG OGs28NM8@1,2QV6X@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons8
Model size2202
Cds size1767
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10535.730.1prot_P-canaliculata_contig10535.730.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10535 2401..6277 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.828085-UTR-P-canaliculata_contig10535:1933..20141622815624.828085-UTR-P-canaliculata_contig10535:1933..2014Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10535 1934..2014 -
1693494172.8027117-UTR-P-canaliculata_contig10535:1933..20141693494172.8027117-UTR-P-canaliculata_contig10535:1933..2014Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10535 1934..2014 -
1622815624.8403118-UTR-P-canaliculata_contig10535:2184..24001622815624.8403118-UTR-P-canaliculata_contig10535:2184..2400Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10535 2185..2400 -
1693494172.818871-UTR-P-canaliculata_contig10535:2184..24001693494172.818871-UTR-P-canaliculata_contig10535:2184..2400Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10535 2185..2400 -
1622815624.9389167-UTR-P-canaliculata_contig10535:6277..64151622815624.9389167-UTR-P-canaliculata_contig10535:6277..6415Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10535 6278..6415 -
1693494172.8943822-UTR-P-canaliculata_contig10535:6277..64151693494172.8943822-UTR-P-canaliculata_contig10535:6277..6415Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10535 6278..6415 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.8571122-CDS-P-canaliculata_contig10535:2400..26341622815624.8571122-CDS-P-canaliculata_contig10535:2400..2634Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10535 2401..2634 -
1693494172.8278809-CDS-P-canaliculata_contig10535:2400..26341693494172.8278809-CDS-P-canaliculata_contig10535:2400..2634Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10535 2401..2634 -
1622815624.8672686-CDS-P-canaliculata_contig10535:2857..36921622815624.8672686-CDS-P-canaliculata_contig10535:2857..3692Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10535 2858..3692 -
1693494172.8369856-CDS-P-canaliculata_contig10535:2857..36921693494172.8369856-CDS-P-canaliculata_contig10535:2857..3692Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10535 2858..3692 -
1622815624.8775752-CDS-P-canaliculata_contig10535:3957..40251622815624.8775752-CDS-P-canaliculata_contig10535:3957..4025Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10535 3958..4025 -
1693494172.8469062-CDS-P-canaliculata_contig10535:3957..40251693494172.8469062-CDS-P-canaliculata_contig10535:3957..4025Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10535 3958..4025 -
1622815624.8917055-CDS-P-canaliculata_contig10535:4427..46131622815624.8917055-CDS-P-canaliculata_contig10535:4427..4613Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10535 4428..4613 -
1693494172.8605475-CDS-P-canaliculata_contig10535:4427..46131693494172.8605475-CDS-P-canaliculata_contig10535:4427..4613Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10535 4428..4613 -
1622815624.9038503-CDS-P-canaliculata_contig10535:4931..51141622815624.9038503-CDS-P-canaliculata_contig10535:4931..5114Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10535 4932..5114 -
1693494172.868935-CDS-P-canaliculata_contig10535:4931..51141693494172.868935-CDS-P-canaliculata_contig10535:4931..5114Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10535 4932..5114 -
1622815624.9141097-CDS-P-canaliculata_contig10535:5694..58381622815624.9141097-CDS-P-canaliculata_contig10535:5694..5838Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10535 5695..5838 -
1693494172.8768904-CDS-P-canaliculata_contig10535:5694..58381693494172.8768904-CDS-P-canaliculata_contig10535:5694..5838Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10535 5695..5838 -
1622815624.9289186-CDS-P-canaliculata_contig10535:6160..62771622815624.9289186-CDS-P-canaliculata_contig10535:6160..6277Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10535 6161..6277 -
1693494172.886212-CDS-P-canaliculata_contig10535:6160..62771693494172.886212-CDS-P-canaliculata_contig10535:6160..6277Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10535 6161..6277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10535.730.1

>prot_P-canaliculata_contig10535.730.1 ID=prot_P-canaliculata_contig10535.730.1|Name=mRNA_P-canaliculata_contig10535.730.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=589bp
MFYANCVQPDTLDECPPPSKQESRRYTEGVDNGSNFRHRIGLALGMPRES
VPSAQELWDFLVTSTQEKMSAQERMSPQGKAKETPTKILLLLKGVDALYE
GGGIEARKSLFTFLDELCRISTNFKLVLTCEKQLLENANAHFRSTKEQVH
KVLPLSKENSAKLLMHLLPVGSELRYADVSSQPSPNYKEAVERIQNLSLM
ETVNGHPGILHLLGPDLLYPFQNNPSYEKMAITYRAQFEKGRIKPFSLER
ANKIAYEAGLRDNRAKSVWVGATYKANAGGGSVSGDDDAYHRSVRWGYLS
RALQLYLSNLQTIGGDAMLSVDSAYSMDIRDNGKTFSSERCSSSEASWYA
RSDGLGHGYVSSFRPRLLNSDELNLIRAHLRSCRTNTADHRRGTTSCGSD
VIRELAHKSGYIEVNQSEEGGNELTQLGCDNENDIFSLETFVEFCHWWTP
VSTTLSLIPNEWASLNPVRVQGFMGIMQAKEQLLKTKRPGVFLLRFSESS
PGRLVLTYTSKASRDMSSGRARKNGSEGCSVVVEHSYITVNPDRRWKLHY
GKGGDGNSYSSLRDLVNSKVDLQTLYPSFAKGNAFETS*
back to top

mRNA from alignment at P-canaliculata_contig10535:1934..6415-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10535.730.1 ID=mRNA_P-canaliculata_contig10535.730.1|Name=mRNA_P-canaliculata_contig10535.730.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4482bp|location=Sequence derived from alignment at P-canaliculata_contig10535:1934..6415- (Pelvetia canaliculata dioecious)
CAGAAAGCCGTTAAGCTGTTGCTAGATCCCGAGGCGGCATGCCTGTCGTT TGTCGGCGAAAGGGGAATTGGTAAGCGGGAGCGGGCTCTTCAAGCCTGGA ACTACGTGCGCGCGAGAGGGGGTTTCGGGTTCAGTGCGATGTTCTATGCG AACTGCGTGCAGCCCGATACACTCGATGAATGTCCCCCGCCGTCGAAGCA AGAGTCTCGTCGCTACACGGAGGGCGTTGACAACGGGAGCAACTTTCGTC ATCGGGTGAGCGCAAATCCGGATTGACTCCGTTTTTCAATTCCGTGAACT TCGGGGGCGTGTGCGGGCGGCATAGCTGCCATTATAACATGCTCAGGCTC GCTTGCTAAGGCCATGCCGACACTCATCGAGCTTGGGATTCGTGTCTTGG AATAAGTATAAATAGGGCCAGGCTTATAAACAGACTATTTGGAACTTTCG CATCACCTTACGTGGTTCAATTCCAATCAGGCTCTTTTTAGATAGTGACG TCAGACGCGCACTTGTTTTCGCATCCACCATGACATTTTCTTCTTTGCGT GATCCGCGTCGCGATACCCGTGCCCAGATCGGGCTGGCGCTTGGCATGCC TCGGGAGTCTGTTCCCTCAGCCCAGGAGCTGTGGGATTTCCTGGTGACGT CTACCCAAGAGAAGATGTCTGCCCAAGAGAGGATGTCTCCCCAAGGGAAG GCGAAAGAGACACCAACCAAGGTAAGTAAAGCATATAGCCACTCACCTTG TCCGCGCGATGACATCGCTCTGGACACATTTCCCAGTCTGTGAACCTGGC GAGACCGACGTTGTTTTCTTAAATGAATGTCACGTATGCAGCAAATAATG GTGTTCCGAGGACTGGGTTGGAAGTATAAATCGTTCAGAAGGCATATCGT GTGCAGTGTAATGGAGGCTTCTAAAAAGAATGACTCGAAACAGGTCGCTG CGACCCAACGTTGTCTTTGCACACGATAACTAGACGCGAAGAAAGAGGGT CGAAGTCCGGTGCATACTACCAGTGGCGGGGGAGCCAAAAGACAGACAAA GCGCGTTGGTAACGGGATTCCACAAGCAGTAATGCATTCGCTGTAAACCC TCTCGCCCGTATTTACGGCTCATCGGGCCTGGTGGTCGGCACTCATTCAC ATTAGACACTGGTTATGACCTGGTTCTGTCCTCCGTGTCGCAGTCCACGC TACGAGGGCTATCGCTCTGATGATTTCAGTCGACTATAATAGTCGAACTT GCTGGAATAAAACGCGTAAGCACGTTTCGTTTTGTGCTTTCTTGCCGCCA GATCCTCTTGCTGTTGAAAGGTGTTGATGCTCTCTACGAGGGTGGTGGGA TCGAGGCACGCAAAAGCCTGTTTACCTTTCTCGACGAGCTGTGCCGTATC AGTACAAACTTTAAGCTGGTCCTTACTTGCGAGAAGCAGCTTCTGGAAAA CGCAAACGCGCACTTCAGGTCAACCAAGGAGCAGGTAGGTATTAAGTGCA CTACTGTAGGGGGTATATAATTTTCACCCTACGTACAAGAGAACGGAACT CTTTGAGATGTATGCAACACAGAGGGATGAAAAATTGAAGCCCAGATACT CACACACGGGGTCTGACTCAGCGACGATATTCTTGTGGTTTAGCCAGTCA GTCACTGCCGCAATTTCGGGGATGCCACGCTAATGCGACTACACCCAAGC TTGGCAATTAACATCAGATGCTTTTTTTAATCGATTACTCTTATAGCCAG AGCGAAACCCGTCGCTCTCTATCGTCTGACCAACTTGTCCATTTGATGGC AGGTGCATAAAGTTCTTCCCTTGAGTAAAGAAAACTCAGCTAAGCTGCTC ATGCACCTCTTGCCGGTTGGAAGCGAATTGAGATACGCGGATGTGAGCTC CCAGCCGAGCCCCAACTACAAGGAAGCGGTTGAACGTATCCAGAACCTCT CCCTGATGGAAACGGTGAATGGACACCCCGGAATTCTGGTGAGGGGCAAG GTAACCATCGCTTATTTGTAGTGTTCTTACAATACTGGCGTCTCACTCGA CCATAGCAGCTGCTGGCTCAACGGTAGGAACCCCAATAAGATATATTCTA TGGTATGGGAAGAGTGGGTCATATGCGCGCAAAGTGCTTCACTTTGGCCC TAGAGCATTTGGTTCAGAGTGCTGTCGGCGCGCATCTTCATTGAGCTCGT GTCCACCACAAGCAAACGGCTTGCAATTTTTCAGTTCGCTATGTGACGTA CCCTTGTTGACTACAGCGTTCCCTTTCTCAGCCTCTTTAAATTATCACGA ATGGCACCCGCCACTTGCTATGTACGTACGCTGACTCGACCACCATCCTG TGTCATCGATCCGCGCGTATTCCCGCCTTTGTTCCCGCAGCACCTCTTGG GTCCGGACCTTCTGTACCCCTTCCAAAACAATCCTTCCTACGAGAAAATG GCTATCACGTGCGTATGCTCTCGTGGACAGTTAAGGTCCTATCCTGTTAG GGTGGATGTTTCCACCCTCCTGCCCCCCGGCAGTCACGAGTTCTTCGTAT CAGACATCATAGGTGTAACATATTCGTCACCCACTGTCTGTCTCCGTGTT ATGCGGCATGTCTTAGCTCGTGGCGTGGAGCTTATCTTCATGCCCACCAT CGGCACCCTCCGAGGGACCAGATGACACCCTCTTTGTTTACGGATTTTGC CGATACCACTCGTCCCCTCTCAGGTACCGCGCACAGTTCGAGAAGGGACG GATCAAACCATTCTCCTTAGAACGAGCGAATAAAATCGCCTACGAGGCGG GGCTCCGAGATAACAGGGCTAAGTCTGTCTGGGTGGGGGCCACGTATAAG GCAAATGCAGGAGGCGGTAGCGTCAGTGGCGATGATGACGCATACCATCG CTCCGTACGGTGGGGATACCTATCTCGAGCCCTACAGCTCTATTTGAGTA ACCTGCAAACAATCGGCGGCGACGCGATGCTTTCTGTCGACTCCGCTTAC AGCATGGACATCAGAGACAACGGGAAGACTTTCAGCAGCGAGCGTTGCTC ATCCAGCGAGGCAAGCTGGTACGCCCGCAGCGACGGGCTTGGACACGGGT ACGTAAGCTCGTTCAGGCCCCGCCTTTTGAACAGCGACGAGCTGAACTTA ATTCGGGCGCATCTGCGGTCGTGTAGAACGAACACAGCCGACCATCGACG CGGTACAACCAGTTGCGGAAGCGATGTGATTAGGGAATTAGCCCACAAGA GTGGGTACATCGAGGTGAACCAGAGCGAGGAAGGGGGAAATGAGCTGACC CAACTGGGATGTGACAACGAAAACGATATTTTTTCTTTGGAAACGTTTGT GGAGTTTTGCCATTGGTGGACTCCTGTCAGTACCACCCTGTCGCTAATTC CAAATGAATGGGCCTCGCTGAATCCGGTGAGAGTGCAAGGGTTTATGGGA ATTATGCAAGCAAAAGAGCAACTTTTGAAGACAAAACGGCCTGGGGTTTT CCTTCTGCGATTCAGCGAGTCGAGCCCGGGGCGTTTGGTGCTGACCTACA CAAGCAAGGTGCGCAAATGTTTTGTTTTGGTTGTTTTGAGGTCGACAAGC GAAGACAAATGTACGTTGCTCTTTCTATGAAGTCTTTGCTGTGTTGGATG CAGAAACTCGAAATACGGCGGATACCTCGTCGGTACATTTTCCATAATTT GTGAAGCGGTCGCTCAAAACGAGTATTCTCTGCGGACCCCGCTGCCTGGG TGCTCTCCTTCGCTCTGTTAACTTGCCCCAGGCGTCTCGAGATATGAGCA GCGGACGAGCCCGTAAGAACGGCTCTGAGGGTTGCTCTGTCGTCGTCGAG CACTCATACATCACCGTGAACCCAGATAGGCGGTGGAAGTTGCACTACGG CAAAGGAGGGGACGGCAACTCCTACTCTTCCCTACGCGATTTGGTGAACA GTAAAGTCGACCTCCAGACGCTTTACCCAAGTTTCGCAAAGGGGAATGCT TTCGAAACCTCTTAACTGTAGTTCGTCACCAAAATGGTTCCCAGTTATGA CTTGCGCGGCAATGAGGGTCATCAACATTTGGGACAAAATAGCACCCTAG CCGACCGAACCATCGGAATGTTGCAACATGAAGCCTTAACGTGGATTTTA TCTTCCGGCCACGGGGTTTTTGTACTTATTTTTATTTAAATACTACTCAG GGATTGGAAACCTTAAAGTATCGAAGTCTTGGCACACCCCCTAGGCTGAC TTTCCAGGCTTGATTGTTCCACAACCAAGAGGGTGCCAACGCCAAAAAGG GCGGTTTTCGAAAGATCTCGTCGAGAGCTTTCTTTAGACATATCGGTCGG TGTTCACATCCTCTTGGTTGTGGAGCAATCGAGCTTGGAAAGTCAGTCTA GGGGGATGTGTCAAGACTCCGATACTTACGCTAGGTGTGAAGTGGCGGTT GGTTCTGGTGATGTCATATACGTATACCTGTA
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig10535:1934..6415-

>mRNA_P-canaliculata_contig10535.730.1 ID=mRNA_P-canaliculata_contig10535.730.1|Name=mRNA_P-canaliculata_contig10535.730.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=3534bp|location=Sequence derived from alignment at P-canaliculata_contig10535:1934..6415- (Pelvetia canaliculata dioecious)
ATGTTCTATGCGAACTGCGTGCAGCCCGATACACTCGATGAATGTCCCCC
GCCGTCGAAGCAAGAGTCTCGTCGCTACACGGAGGGCGTTGACAACGGGA
GCAACTTTCGTCATCGGATGTTCTATGCGAACTGCGTGCAGCCCGATACA
CTCGATGAATGTCCCCCGCCGTCGAAGCAAGAGTCTCGTCGCTACACGGA
GGGCGTTGACAACGGGAGCAACTTTCGTCATCGGATCGGGCTGGCGCTTG
GCATGCCTCGGGAGTCTGTTCCCTCAGCCCAGGAGCTGTGGGATTTCCTG
GTGACGTCTACCCAAGAGAAGATGTCTGCCCAAGAGAGGATGTCTCCCCA
AGGGAAGGCGAAAGAGACACCAACCAAGATCGGGCTGGCGCTTGGCATGC
CTCGGGAGTCTGTTCCCTCAGCCCAGGAGCTGTGGGATTTCCTGGTGACG
TCTACCCAAGAGAAGATGTCTGCCCAAGAGAGGATGTCTCCCCAAGGGAA
GGCGAAAGAGACACCAACCAAGATCCTCTTGCTGTTGAAAGGTGTTGATG
CTCTCTACGAGGGTGGTGGGATCGAGGCACGCAAAAGCCTGTTTACCTTT
CTCGACGAGCTGTGCCGTATCAGTACAAACTTTAAGCTGGTCCTTACTTG
CGAGAAGCAGCTTCTGGAAAACGCAAACGCGCACTTCAGGTCAACCAAGG
AGCAGATCCTCTTGCTGTTGAAAGGTGTTGATGCTCTCTACGAGGGTGGT
GGGATCGAGGCACGCAAAAGCCTGTTTACCTTTCTCGACGAGCTGTGCCG
TATCAGTACAAACTTTAAGCTGGTCCTTACTTGCGAGAAGCAGCTTCTGG
AAAACGCAAACGCGCACTTCAGGTCAACCAAGGAGCAGGTGCATAAAGTT
CTTCCCTTGAGTAAAGAAAACTCAGCTAAGCTGCTCATGCACCTCTTGCC
GGTTGGAAGCGAATTGAGATACGCGGATGTGAGCTCCCAGCCGAGCCCCA
ACTACAAGGAAGCGGTTGAACGTATCCAGAACCTCTCCCTGATGGAAACG
GTGAATGGACACCCCGGAATTCTGGTGCATAAAGTTCTTCCCTTGAGTAA
AGAAAACTCAGCTAAGCTGCTCATGCACCTCTTGCCGGTTGGAAGCGAAT
TGAGATACGCGGATGTGAGCTCCCAGCCGAGCCCCAACTACAAGGAAGCG
GTTGAACGTATCCAGAACCTCTCCCTGATGGAAACGGTGAATGGACACCC
CGGAATTCTGCACCTCTTGGGTCCGGACCTTCTGTACCCCTTCCAAAACA
ATCCTTCCTACGAGAAAATGGCTATCACCACCTCTTGGGTCCGGACCTTC
TGTACCCCTTCCAAAACAATCCTTCCTACGAGAAAATGGCTATCACGTAC
CGCGCACAGTTCGAGAAGGGACGGATCAAACCATTCTCCTTAGAACGAGC
GAATAAAATCGCCTACGAGGCGGGGCTCCGAGATAACAGGGCTAAGTCTG
TCTGGGTGGGGGCCACGTATAAGGCAAATGCAGGAGGCGGTAGCGTCAGT
GGCGATGATGACGCATACCATCGCTCCGTACGGTGGGGATACCTATCTCG
AGCCCTACAGCTCTATTTGAGTAACCTGCAAACAATCGGCGGCGACGCGA
TGCTTTCTGTCGACTCCGCTTACAGCATGGACATCAGAGACAACGGGAAG
ACTTTCAGCAGCGAGCGTTGCTCATCCAGCGAGGCAAGCTGGTACGCCCG
CAGCGACGGGCTTGGACACGGGTACGTAAGCTCGTTCAGGCCCCGCCTTT
TGAACAGCGACGAGCTGAACTTAATTCGGGCGCATCTGCGGTCGTGTAGA
ACGAACACAGCCGACCATCGACGCGGTACAACCAGTTGCGGAAGCGATGT
GATTAGGGAATTAGCCCACAAGAGTGGGTACATCGAGGTGAACCAGAGCG
AGGAAGGGGGAAATGAGCTGACCCAACTGGGATGTGACAACGAAAACGAT
ATTTTTTCTTTGGAAACGTTTGTGGAGTTTTGCCATTGGTGGACTCCTGT
CAGTACCACCCTGTCGCTAATTCCAAATGAATGGGCCTCGCTGAATCCGG
TGAGAGTGCAAGGGTTTATGGGAATTATGCAAGCAAAAGAGCAACTTTTG
AAGACAAAACGGCCTGGGGTTTTCCTTCTGCGATTCAGCGAGTCGAGCCC
GGGGCGTTTGGTGCTGACCTACACAAGCAAGGTACCGCGCACAGTTCGAG
AAGGGACGGATCAAACCATTCTCCTTAGAACGAGCGAATAAAATCGCCTA
CGAGGCGGGGCTCCGAGATAACAGGGCTAAGTCTGTCTGGGTGGGGGCCA
CGTATAAGGCAAATGCAGGAGGCGGTAGCGTCAGTGGCGATGATGACGCA
TACCATCGCTCCGTACGGTGGGGATACCTATCTCGAGCCCTACAGCTCTA
TTTGAGTAACCTGCAAACAATCGGCGGCGACGCGATGCTTTCTGTCGACT
CCGCTTACAGCATGGACATCAGAGACAACGGGAAGACTTTCAGCAGCGAG
CGTTGCTCATCCAGCGAGGCAAGCTGGTACGCCCGCAGCGACGGGCTTGG
ACACGGGTACGTAAGCTCGTTCAGGCCCCGCCTTTTGAACAGCGACGAGC
TGAACTTAATTCGGGCGCATCTGCGGTCGTGTAGAACGAACACAGCCGAC
CATCGACGCGGTACAACCAGTTGCGGAAGCGATGTGATTAGGGAATTAGC
CCACAAGAGTGGGTACATCGAGGTGAACCAGAGCGAGGAAGGGGGAAATG
AGCTGACCCAACTGGGATGTGACAACGAAAACGATATTTTTTCTTTGGAA
ACGTTTGTGGAGTTTTGCCATTGGTGGACTCCTGTCAGTACCACCCTGTC
GCTAATTCCAAATGAATGGGCCTCGCTGAATCCGGTGAGAGTGCAAGGGT
TTATGGGAATTATGCAAGCAAAAGAGCAACTTTTGAAGACAAAACGGCCT
GGGGTTTTCCTTCTGCGATTCAGCGAGTCGAGCCCGGGGCGTTTGGTGCT
GACCTACACAAGCAAGGCGTCTCGAGATATGAGCAGCGGACGAGCCCGTA
AGAACGGCTCTGAGGGTTGCTCTGTCGTCGTCGAGCACTCATACATCACC
GTGAACCCAGATAGGCGGTGGAAGTTGCACTACGGCAAAGGAGGGGACGG
CAACTCCTACTCTTCCCTACGCGATTTGGTGAACAGTAAAGTCGACCTCC
AGACGCTTTACCCAAGTTTCGCAAAGGGGAATGCTTTCGAAACCTCTTAA
GCGTCTCGAGATATGAGCAGCGGACGAGCCCGTAAGAACGGCTCTGAGGG
TTGCTCTGTCGTCGTCGAGCACTCATACATCACCGTGAACCCAGATAGGC
GGTGGAAGTTGCACTACGGCAAAGGAGGGGACGGCAACTCCTACTCTTCC
CTACGCGATTTGGTGAACAGTAAAGTCGACCTCCAGACGCTTTACCCAAG
TTTCGCAAAGGGGAATGCTTTCGAAACCTCTTAA
back to top