mRNA_P-canaliculata_contig10530.724.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10530.724.1
Unique NamemRNA_P-canaliculata_contig10530.724.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10530.724.1 vs. uniprot
Match: D8LR49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR49_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.110e-31
Identity = 65/101 (64.36%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:   19 LKEHYDA-------------YHKDLESRPLRLEECLETFTQQEDVKEWYCSRCKAFRNAWKKMDVWRLPPILVIQLKRFQYTDYSGRKLQRKVQVTEMGED 282
            +KEHYDA              HKDLE+RPL LE+CL+TFT QED+KE YCSRCK FRNA KKMDVWRLPPIL IQLKRFQYT YS RKL+  V     G D
Sbjct: 1566 IKEHYDASEALSCLLHSSIALHKDLEARPLSLEKCLDTFTAQEDIKEGYCSRCKEFRNASKKMDVWRLPPILAIQLKRFQYTQYSRRKLRNNVHFPVNGLD 1666
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BLAST of mRNA_P-canaliculata_contig10530.724.1 vs. uniprot
Match: A0A6H5KLB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLB3_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.110e-31
Identity = 65/101 (64.36%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:   19 LKEHYD-------------AYHKDLESRPLRLEECLETFTQQEDVKEWYCSRCKAFRNAWKKMDVWRLPPILVIQLKRFQYTDYSGRKLQRKVQVTEMGED 282
            +KEHYD             A HKDLE+RPL LE+CL+TFT QED+KE YCSRCK FRNA KKMDVWRLPPIL IQLKRFQYT YS RKL+  V     G D
Sbjct: 1737 IKEHYDPSEALSCLLHSSIALHKDLEARPLSLEKCLDTFTAQEDIKEGYCSRCKEFRNASKKMDVWRLPPILAIQLKRFQYTQYSRRKLRNNVHFPVNGLD 1837
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BLAST of mRNA_P-canaliculata_contig10530.724.1 vs. uniprot
Match: A0A7S2SQ59_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQ59_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 6.090e-21
Identity = 43/71 (60.56%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:   46 KDLESRPLRLEECLETFTQQEDVKEWYCSRCKAFRNAWKKMDVWRLPPILVIQLKRFQYTDYSGRKLQRKV 258
            ++L  RPLRLE C++TFT++E + E YCS+CK  RNA  K D WRLPPILV+ LKRFQ+T YS RKL   V
Sbjct:   28 QNLGDRPLRLERCIDTFTKEEKISEAYCSKCKEHRNASLKTDFWRLPPILVVHLKRFQFTSYSRRKLHNLV 98
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BLAST of mRNA_P-canaliculata_contig10530.724.1 vs. uniprot
Match: A0A7S2SQ88_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQ88_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 4.480e-20
Identity = 43/71 (60.56%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:   46 KDLESRPLRLEECLETFTQQEDVKEWYCSRCKAFRNAWKKMDVWRLPPILVIQLKRFQYTDYSGRKLQRKV 258
            ++L  RPLRLE C++TFT++E + E YCS+CK  RNA  K D WRLPPILV+ LKRFQ+T YS RKL   V
Sbjct: 1309 QNLGDRPLRLERCIDTFTKEEKISEAYCSKCKEHRNASLKTDFWRLPPILVVHLKRFQFTSYSRRKLHNLV 1379
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BLAST of mRNA_P-canaliculata_contig10530.724.1 vs. uniprot
Match: A0A835YVN1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN1_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.910e-19
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:   55 ESRPLRLEECLETFTQQEDVKEWYCSRCKAFRNAWKKMDVWRLPPILVIQLKRFQYTDYSGRKLQRKVQVTEMGED 282
            ES+P+ L+ CLETFT +E + E YCSRCK  R    +M +WRLPP+LVIQLKRFQYT YS RKL+  V     G D
Sbjct: 1634 ESQPMSLQRCLETFTAEETIPEGYCSRCKELRETNMRMGLWRLPPVLVIQLKRFQYTAYSRRKLRNLVDFPIRGLD 1709
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BLAST of mRNA_P-canaliculata_contig10530.724.1 vs. uniprot
Match: A0A7S2BSF3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSF3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.090e-17
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:   13 PGLKEHYDAYHKDLESRPLRLEECLETFTQQEDVKEWYCSRCKAFRNAWKKMDVWRLPPILVIQLKRFQYTDYSGRKLQRKV 258
            P +K  Y   H D    PL LE+C++TFTQ+E + E +CS+CK  R A  K + WRLPPILV+ LKRFQ+T YS RKL   V
Sbjct:   12 PNVKTDYR--HTD---EPLTLEKCIDTFTQEEKISEAFCSKCKELRTASLKTEFWRLPPILVVHLKRFQFTSYSRRKLHNLV 88
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BLAST of mRNA_P-canaliculata_contig10530.724.1 vs. uniprot
Match: A0A0P1APS4_PLAHL (Ubiquitinspecific protease n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1APS4_PLAHL)

HSP 1 Score: 84.7 bits (208), Expect = 1.300e-17
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:   43 HKDLESRPLRLEECLETFTQQEDVKEWYCSRCKAFRNAWKKMDVWRLPPILVIQLKRFQYTDYSGRKLQRKV 258
            H+  +++PL L  CLE FT +E + E YC RCK  R A KKMD+WRLPP+LVI LKRF +T  S RKL   V
Sbjct:   10 HQREDNQPLNLTHCLEIFTAKETIPEAYCGRCKTLRPATKKMDIWRLPPLLVIHLKRFCFTQVSRRKLHHLV 81
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BLAST of mRNA_P-canaliculata_contig10530.724.1 vs. uniprot
Match: A0A7S2BU41_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BU41_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.180e-17
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:   13 PGLKEHYDAYHKDLESRPLRLEECLETFTQQEDVKEWYCSRCKAFRNAWKKMDVWRLPPILVIQLKRFQYTDYSGRKLQRKV 258
            P +K  Y   H D    PL LE+C++TFTQ+E + E +CS+CK  R A  K + WRLPPILV+ LKRFQ+T YS RKL   V
Sbjct:  411 PNVKTDYR--HTD---EPLTLEKCIDTFTQEEKISEAFCSKCKELRTASLKTEFWRLPPILVVHLKRFQFTSYSRRKLHNLV 487
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BLAST of mRNA_P-canaliculata_contig10530.724.1 vs. uniprot
Match: A0A484E318_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E318_BRELC)

HSP 1 Score: 85.9 bits (211), Expect = 2.260e-17
Identity = 44/93 (47.31%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:   19 LKEHYDAY-------------HKDLESRPLRLEECLETFTQQEDVKEWYCSRCKAFRNAWKKMDVWRLPPILVIQLKRFQYTDYSGRKLQRKV 258
            LKE YD+              H  L+++PL L  C+E FT +E + E YC RCK  R A KKMD+WRLPP+LVI LKRF +T  + RKL   V
Sbjct: 1377 LKEEYDSIQASKLDLDASVQEHNRLDNQPLNLSHCMEIFTAKETIPEAYCGRCKTLRPATKKMDLWRLPPLLVIHLKRFCFTQVARRKLHHLV 1469
[Close]
BLAST of mRNA_P-canaliculata_contig10530.724.1 vs. uniprot
Match: F0VYX5_9STRA (Ubiquitinspecific protease putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VYX5_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.260e-17
Identity = 46/92 (50.00%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:   10 TPGLKEHYDA-------------YHKDLESRPLRLEECLETFTQQEDVKEWYCSRCKAFRNAWKKMDVWRLPPILVIQLKRFQYTDYSGRKL 246
            T  LKE YD              +++  +  PL L++CL  FT QE + E YC RCKA R A K MD WRLPPILVI LKRF YT  S RKL
Sbjct: 1483 TASLKEEYDPLEASTMITDASIEHNRQKDQGPLTLDQCLNIFTAQEHINEAYCGRCKALRPANKTMDFWRLPPILVIHLKRFCYTQVSRRKL 1574
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10530.724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR49_ECTSI1.110e-3164.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLB3_9PHAE1.110e-3164.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2SQ59_9STRA6.090e-2160.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2SQ88_9STRA4.480e-2060.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835YVN1_9STRA2.910e-1957.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2BSF3_9STRA1.090e-1752.44Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0P1APS4_PLAHL1.300e-1755.56Ubiquitinspecific protease n=1 Tax=Plasmopara hals... [more]
A0A7S2BU41_9STRA2.180e-1752.44Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A484E318_BRELC2.260e-1747.31Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
F0VYX5_9STRA2.260e-1750.00Ubiquitinspecific protease putative n=1 Tax=Albugo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10530contigP-canaliculata_contig10530:6315..8621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.3
Seed ortholog evalue2.1e-27
Seed eggNOG ortholog2880.D8LR49
KEGG koko:K11837
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5560@1,KOG1870@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons4
Model size311
Cds size309
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10530.724.1prot_P-canaliculata_contig10530.724.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10530 6315..8621 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.3631825-CDS-P-canaliculata_contig10530:6314..63621622815624.3631825-CDS-P-canaliculata_contig10530:6314..6362Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10530 6315..6362 -
1693494172.5568259-CDS-P-canaliculata_contig10530:6314..63621693494172.5568259-CDS-P-canaliculata_contig10530:6314..6362Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10530 6315..6362 -
1622815624.373779-CDS-P-canaliculata_contig10530:7636..77771622815624.373779-CDS-P-canaliculata_contig10530:7636..7777Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10530 7637..7777 -
1693494172.578042-CDS-P-canaliculata_contig10530:7636..77771693494172.578042-CDS-P-canaliculata_contig10530:7636..7777Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10530 7637..7777 -
1622815624.383377-CDS-P-canaliculata_contig10530:8211..83071622815624.383377-CDS-P-canaliculata_contig10530:8211..8307Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10530 8212..8307 -
1693494172.587431-CDS-P-canaliculata_contig10530:8211..83071693494172.587431-CDS-P-canaliculata_contig10530:8211..8307Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10530 8212..8307 -
1622815624.3929586-CDS-P-canaliculata_contig10530:8597..86211622815624.3929586-CDS-P-canaliculata_contig10530:8597..8621Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10530 8598..8621 -
1693494172.597897-CDS-P-canaliculata_contig10530:8597..86211693494172.597897-CDS-P-canaliculata_contig10530:8597..8621Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10530 8598..8621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10530.724.1

>prot_P-canaliculata_contig10530.724.1 ID=prot_P-canaliculata_contig10530.724.1|Name=mRNA_P-canaliculata_contig10530.724.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=103bp
TERTPGLKEHYDAYHKDLESRPLRLEECLETFTQQEDVKEWYCSRCKAFR
NAWKKMDVWRLPPILVIQLKRFQYTDYSGRKLQRKVQVTEMGEDELGSSS
SSA
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mRNA from alignment at P-canaliculata_contig10530:6315..8621-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10530.724.1 ID=mRNA_P-canaliculata_contig10530.724.1|Name=mRNA_P-canaliculata_contig10530.724.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2307bp|location=Sequence derived from alignment at P-canaliculata_contig10530:6315..8621- (Pelvetia canaliculata dioecious)
ACGGAGAGGACTCCGGGGCTGAAGGTATATTTCATTGGCGAAGGCACCAT
CAGCGTATTTTTGCCTCGACGGTACCCATGGGAGTTCCGCCTCAGGGTGG
CGGACTTTCATACCTGGAGATGGTAGCTGGCGGTTTCTGGTCCACGTGTC
GTTGGAATCACTTTACTTTATTACTTCATTCAGTCTGTTGATATTAACAG
CTTCCGTCGCCCTCTTTCTTTTCGAGATTTTTCCTCGGTAAGGTTTTCGC
CCATGGCCTTCACCCATTTTTCTTTTGCGCGCGTGTGTGTTCGGCACTCT
CGCGCGCTCGACAGGAGCACTATGACGCGTACCACAAGGACCTCGAGTCG
CGACCGCTTCGGCTAGAAGAGTGCCTCGAGACCTTCACGCAACAGGAGGA
TGTCAAAGAGGTGCGATCGTATACTTGTATAACAGTGGGTATCGTGACTA
GGCTATGCAAATCACTCTTGAGATTCTTGAGAGTAGTAGCGGATATTTTT
CTCCGCTGGCTTCTGCATAGATTTGCTCTCTAAGCCCAAGCCTTTGCCCG
CGCTCGTTGGCGTGTGATGGGTTGATCCGACGATTTGTTTCGGTGGAAGC
GTCTCGCGTTCTGCCATGCCAATACATAGTATATCATGCGTGAAATGCTA
AAGTTGTGGCGTGGTCTATATAATATACTTCTACACGTACACGATTTCGT
CTGGGTTTGGGGCAATTTCGATTTTCTCGCCATCATGGTGTGACCACAGC
CGAAGGGCGAGCAAACCTATAATTTCTCGAGTTCACGGAGACATCTCGCT
GTCGTTGTTTCTCGGGCCATCCTCCACGCCAATCTGAAAAACAGTGGTAC
TGCTCCCGCTGCAAGGCGTTCCGAAACGCTTGGAAGAAGATGGATGTGTG
GCGTCTGCCCCCAATTCTCGTGATCCAGCTCAAGCGTTTCCAGTACACGG
ATTACAGCGGCCGAAAGCTGCAGAGGAAGGTGCAGGTGAGAAGCCTGCTG
TGTGGTGTGCGGTGTGTGGTTTATAAATATTACGAAGTAATAGCATGAAA
ATATGTGTCTCGTCCATCTTGTCTAGGTATATCTTTTTGGTCGTGTGTTT
AAAGGAAGAAGTCTCCTCTCGTGTGCCTGCCTATTTGGGTTTCTTGTATC
ATCAAGGGTGTGGGCGACTCGCCGTCCGTCTATTGATAGGTACGTGTGTC
TCATGTGTTGTATTTAGTATACCGTTTATTTATTTTTATCTTGTTTCCTC
TGTTTTTCTACTCTTGTATCATCCGTTTGGGTAGTGTGCGTTCTGTCCAC
CTGCCTGTATTTTGTGTATCGGCCGGTCTGTAGCTCTATGCTTTTTTTCC
CCGCATGTTTTATGGTATGGCATGGAAGAGAGTGTGCGTCGAGATGTGTT
TACATACGTCGCCTCATTCATTAGACCCTATTCTCCCTATTTGCTGCGGC
GTGGCTCCTTTCTCCTCGTCATCGACCGGCGCCTTTCCGCCCTATCCGGA
CGCGAAAACCCGTGAGAAACTTCCTCGAAACTCGCTTACCTGACTGTAAC
TTGACCAGTTTCCAGTGAACAGGCTGGATCTCAGCCCACACCTCGTCGGC
GTTGACGTCGGCGATACCGTACCGTCCACAACCAGGATGGCGACGCCGGG
ATGGTTTGGCGCGAACGCGAGATGGTGTTCCAGAAATGAGCTGAACCCCG
TGTTGCCTTTTAAGCAATCCAAACTTGGCCTTCGTTGGTTACAGCCTTAC
ATGACCGACTGAGCAAGTTGTCTCTTCGCGTTTACTTGAAGCCGCTCTTC
AGAAGAGAGTCCTGCTGACATCATGGCCACAGCACAAGAATTGTGTCTTG
CATAAAAACCGTCCGCGTGTTACACTCAATTTCGCCGCGTGATTGGAACA
AGGGAGGGAGAGGAGATGGATCGCTGTATGTTCTTAACGCGGTGGTGCAC
CATATTGGTCAGATTAACTCTGGCCATTACGTGGCGTCCGTGAAGACGCA
AACCACTGGCAGGTGGTTTAGGATGAAAGACAAGGCGCGTTGTTCGAAAC
GATTCCCGTAGGTACTATAATATTATTATCTCGGATCTTCACGAGTTCCA
ATCCTCCTGTCACCCGCGGAGAGGCATTTTTCCTTTTCCTCTCCCACTTC
CAATTGTAGTTAAAATCCAAGTTTAAGCGCAAACGGCTGCAGCATCACCC
CTGTGACCCTCCCTCCCTCCCTACCTCCCACAAATAACATACACCCCCCG
GCGCCGCAGGTGACCGAGATGGGAGAAGACGAGTTGGGGTCGTCCAGTTC
GAGCGCG
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Coding sequence (CDS) from alignment at P-canaliculata_contig10530:6315..8621-

>mRNA_P-canaliculata_contig10530.724.1 ID=mRNA_P-canaliculata_contig10530.724.1|Name=mRNA_P-canaliculata_contig10530.724.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at P-canaliculata_contig10530:6315..8621- (Pelvetia canaliculata dioecious)
ACGGAGAGGACTCCGGGGCTGAAGACGGAGAGGACTCCGGGGCTGAAGGA
GCACTATGACGCGTACCACAAGGACCTCGAGTCGCGACCGCTTCGGCTAG
AAGAGTGCCTCGAGACCTTCACGCAACAGGAGGATGTCAAAGAGGAGCAC
TATGACGCGTACCACAAGGACCTCGAGTCGCGACCGCTTCGGCTAGAAGA
GTGCCTCGAGACCTTCACGCAACAGGAGGATGTCAAAGAGTGGTACTGCT
CCCGCTGCAAGGCGTTCCGAAACGCTTGGAAGAAGATGGATGTGTGGCGT
CTGCCCCCAATTCTCGTGATCCAGCTCAAGCGTTTCCAGTACACGGATTA
CAGCGGCCGAAAGCTGCAGAGGAAGGTGCAGTGGTACTGCTCCCGCTGCA
AGGCGTTCCGAAACGCTTGGAAGAAGATGGATGTGTGGCGTCTGCCCCCA
ATTCTCGTGATCCAGCTCAAGCGTTTCCAGTACACGGATTACAGCGGCCG
AAAGCTGCAGAGGAAGGTGCAGGTGACCGAGATGGGAGAAGACGAGTTGG
GGTCGTCCAGTTCGAGCGCGGTGACCGAGATGGGAGAAGACGAGTTGGGG
TCGTCCAGTTCGAGCGCG
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