mRNA_P-canaliculata_contig10494.672.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10494.672.1
Unique NamemRNA_P-canaliculata_contig10494.672.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10494.672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10494contigP-canaliculata_contig10494:6388..10730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1629
Cds size975
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10494.672.1prot_P-canaliculata_contig10494.672.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10494 6984..10672 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.6997852-UTR-P-canaliculata_contig10494:6387..69831622815619.6997852-UTR-P-canaliculata_contig10494:6387..6983Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10494 6388..6983 -
1693494169.8861573-UTR-P-canaliculata_contig10494:6387..69831693494169.8861573-UTR-P-canaliculata_contig10494:6387..6983Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10494 6388..6983 -
1622815619.7797332-UTR-P-canaliculata_contig10494:10672..107301622815619.7797332-UTR-P-canaliculata_contig10494:10672..10730Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10494 10673..10730 -
1693494169.9684281-UTR-P-canaliculata_contig10494:10672..107301693494169.9684281-UTR-P-canaliculata_contig10494:10672..10730Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10494 10673..10730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.7117808-CDS-P-canaliculata_contig10494:6983..72261622815619.7117808-CDS-P-canaliculata_contig10494:6983..7226Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10494 6984..7226 -
1693494169.895601-CDS-P-canaliculata_contig10494:6983..72261693494169.895601-CDS-P-canaliculata_contig10494:6983..7226Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10494 6984..7226 -
1622815619.72389-CDS-P-canaliculata_contig10494:7456..76751622815619.72389-CDS-P-canaliculata_contig10494:7456..7675Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10494 7457..7675 -
1693494169.9049714-CDS-P-canaliculata_contig10494:7456..76751693494169.9049714-CDS-P-canaliculata_contig10494:7456..7675Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10494 7457..7675 -
1622815619.734464-CDS-P-canaliculata_contig10494:8034..83081622815619.734464-CDS-P-canaliculata_contig10494:8034..8308Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10494 8035..8308 -
1693494169.9150434-CDS-P-canaliculata_contig10494:8034..83081693494169.9150434-CDS-P-canaliculata_contig10494:8034..8308Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10494 8035..8308 -
1622815619.7444582-CDS-P-canaliculata_contig10494:8685..87721622815619.7444582-CDS-P-canaliculata_contig10494:8685..8772Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10494 8686..8772 -
1693494169.9329925-CDS-P-canaliculata_contig10494:8685..87721693494169.9329925-CDS-P-canaliculata_contig10494:8685..8772Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10494 8686..8772 -
1622815619.7552075-CDS-P-canaliculata_contig10494:9225..92941622815619.7552075-CDS-P-canaliculata_contig10494:9225..9294Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10494 9226..9294 -
1693494169.9469929-CDS-P-canaliculata_contig10494:9225..92941693494169.9469929-CDS-P-canaliculata_contig10494:9225..9294Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10494 9226..9294 -
1622815619.7693553-CDS-P-canaliculata_contig10494:10589..106721622815619.7693553-CDS-P-canaliculata_contig10494:10589..10672Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10494 10590..10672 -
1693494169.9583888-CDS-P-canaliculata_contig10494:10589..106721693494169.9583888-CDS-P-canaliculata_contig10494:10589..10672Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10494 10590..10672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10494.672.1

>prot_P-canaliculata_contig10494.672.1 ID=prot_P-canaliculata_contig10494.672.1|Name=mRNA_P-canaliculata_contig10494.672.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=325bp
MTDKSDPWLSRATTPEGHEIGARKKRTWRDVLACSTVSTLFRETATDDTI
WIHYTKEYTAKLLANAQVGPAFLMQAGLDRVMDLLYAQLPKAYVEIYPHL
QPTREVHAFRMMARKSWHRWWLTMAWVQHLQRQKSAASEYTGYPRIEALD
IGSNSFKTVDRFGTAFFFPEQILSFVSNLYRACCEDFWEELLQEDSKPGH
GGGDKAFTQLLQRGCNRAPLWGDMLSVLNGFLRLYRGRDFIVWKDNMGFL
LQDPDSTTTPYSSEQCPDEQSSDVDPASLSRRQLQIPCTHGLFVQTLAKP
VKRLDSWPYSRHVTLEGLLAHLTS*
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mRNA from alignment at P-canaliculata_contig10494:6388..10730-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10494.672.1 ID=mRNA_P-canaliculata_contig10494.672.1|Name=mRNA_P-canaliculata_contig10494.672.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4343bp|location=Sequence derived from alignment at P-canaliculata_contig10494:6388..10730- (Pelvetia canaliculata dioecious)
CGATAGAGCGTGCCACGGTACGTTTGCTCCTGAGCTGCTGCGCCCTACCA
GGTTTTTCATGACAGACAAGAGTGACCCCTGGCTCTCGCGTGCCACCACC
CCAGAAGGGCACGAAATTGGAGCTCGGAAGAAGCGCACCTGGTGAACATA
ATATAACGCCTCCGAAATTCAACCATTGGTTGACGAGTTGTAAGATTGCT
GAACTTGCATGGCGAAAAAAATTGAAAAGCGTGAACCNNNNNNNNNNTAG
TGACCACAGGCAGGATGGTAATGATGAGGTCCATCGGCTATAAGTGAGAT
TAGAGAAAAAAGAAAAAAATGTGCTTTCTTTGTCACACATGTTCACTACA
TACCAAGAGTGGGTGTGGGAAAAGAGAGACGCATAACGATTGGTCCATGG
TGAAACCTGAAAAGGCAGCACCCGTTACTGGAACTACTTTGATGACTATT
GACCCTGCGCTGGCGGCCTCTCGGCAGTGAGCGCCATCGGTACGCATTTG
CGTGACCTGATAAACTCGGGACTGACCCGATGGCGGTTGACTGCGAAGAA
ATGGACGCTTTCGCGGAAATCGGGAGAAATCCCGTGAGTAAGAACCAGAT
AGAGTTTGGAGAATGAGCGGGCCGACGAAGGGCGGGACGGCCGAGCCCGT
CTCACGAGACCAAACTGTCAGGCGCGAATGAGGACGAGGAACTATTAATA
ATCATTTCCCTTGTTCAGCTGACCACGAGCAGGATCGGCATCCATACCAG
GTTGATCCATGCTCTGCTGAAAGTGCTGACCATACATATATACTTGTTCA
CAAAAGTATCTTCTCCACCGTCTGTAACACTGCTACAGCACGCACGCAAA
CTACTCGTACCATACCACATATAGACTACTGTAAATATACTATTATACGA
ATAGCTCGTGGTTTCATCTCAAACTGCACCTGGCATCTTCTTAGCGCAGT
CAACCCGTTTCGTTGTTCCTCCAAGCTGTACTCGTACCCAAGCGATTCAT
CGAAATCAGCAGTAGAACTGGCGTTTCGTCGTGTTTTTAGTTTGCAACAC
ACAGACAACCCTCCCTCCATTCCTACTACTGATGATCCACTTGAGTGCTT
CGTTGTTGTAGCGTCGAGAATTGTGAGAGATTTATGAGAGAGCTTCCCCC
CCCGTTACAACGTTTGGTTGTCATGCCATGTCATTTTGTGTTCATCTGCA
ATGCGCGCGTAATTACGACATTCTCACGGGGTCCTTTCGAACAGGGTAGG
TACAACCAGTAAAGAAATCAGTATAGAGCTACTCGTAAGACTTTTTAAGA
CTAAAAACACAAGCATGTGGAAAATGGAGCGAGACGGCGGCGGTGGTAAC
CTCCCGCCGCATCCCGCGGCATATCCTAAACTCCATTGCTCCACTGCTTT
ACCGTTTCGTATCCTGTAAATTTGCGCGTGCCCCAGGCGAGATGTGTTGG
CGTGCAGCACAGTGTCCACCTTGTTCAGAGAGACGGCGACAGACGACACA
ATCTGGTGAGAGCCAAGTTCATCAATATTTACACTTACCGTACCAAACGG
GATGGGTTATTAGTACCGCACGCTTGCAATATCGCTTTCAACGATTCCCA
CCGGAATCCAACGGCTTTGTCTTGTAACCATAGAACCGAGCGGAGCTATC
AGCCTTGTCGACGTGTGGATCGGCCGCCGGCTTCTGGCACGTCAACATAT
CAACTCAAATGTCCCAAACAAGAGCACATGTGGATAATTTGTTATTTCGG
ACGATCGTTCGTTCTTTGCCGCGGTGAAGCGGTTTCGCTTCTTTCTTTTG
ATTTGGTGATTTGAATATGCCAGTATTGTAAACGAGGCGCAACGAGGCAC
GAGCAGAGACCCCCCACCCCCAATCTCCTTCACTATTATACTATTAATAC
AAGAACGACGCCCTTACATGAACCCCCCTCGCACCCTTCCGCCCCCGCCG
CGTGCCAGGATACACTACACAAAGGAGTACACGGCAAAGCTTCTCGCCAA
CGCGCAAGTGGGGCCTGCGTTCCTCATGCAGGCAGGGCTTGACAGGTATT
AATAGGTACCTCATGCAGTCAGGGCTTGACAGTCCCGGTGCGCGAAGAAG
AGCGCGATAATCGAACGCCTGAAGCAAAAGCCTCACCAAGGCGCCGCCGA
ATGTTGCGAGCGAGTCGCGGAAGTGAACGTTAACCGTGGTACAAACCACC
ACCGGAACAGAATCCTCAATGGTAATCCTCAGCGGTGTCGACTTCCTTGC
CCCGTTTCTTACGATGGAATGGTGATGGACTAGTACGGAATGGTGATGGA
ATGGTGTGTGTGGCCCCCTCGTTGAGAGTTCCTGGGTTGTACTACTTCCC
ATCTCACGGTGTGCGTAGTGGCATCCACCCCTCGGCCTAAGTGATTGATA
CCTTCGCCAACGTTGTCATCAGGGTCATGGACCTGCTGTATGCGCAGTTA
CCTAAGGCCTACGTGGAGATCTATCCGCACCTGCAGCCTACTCGAGAGGT
GCACGCATTTCGCATGATGGCCCGTAAATCGTGGCATCGATGGTGGTTAA
CGATGGCGTGGGTACAGCACCTGCAGCGGCAAAAAAGTGCCGCGAGCGAA
TACACGGGATATCCAAGGATAGAAGCGTTGGATATCGGGAGCAACTCTTT
CAAGACGGTGGATCGATTTGGCACTGCGTTTTTCTTCCCAGAACAGGTGC
GTACTCGCACGAGTAACTCAGGGTTGAACGACAGCCTCGAGATTCCTGTG
TTTCTCGAAATCCAGCCATAGGCAGTGTGGGTAACGTTACAGTAGGTAAG
GTTCGGAACAGCGAGAAATCCCCTCCCAATCCCCTCCCCGCACCCAAACA
AAAACTTGGGAAGGAAACAACGGAGAGGGAGGGGTACCGTCAGAAATGGT
AATAAAGCGTACTTGGGATCGACCGTCCAAGGTAAATCGTGTTCAAGGTG
GTCACTTTGCTACTAGGGGTCCTGGAGTCCTTTTCTGGACATCGTCGCTG
CATTACCCGTCCGCCCTGTTGATGTTGCATTCCTCGTGTCATGTTTGCAC
CGCAGATTCTTTCTTTCGTATCTAATCTATACCGGGCATGCTGCGAGGAC
TTCTGGGAGGAGCTCTTACAAGAAGACTCCAAGCCCGGTCATGGAGGCGG
AGACAAGGCATTCACGCAGTTGCTGCAACGAGGGTGTAATCGGGCCCCGC
TATGGGGTGACATGCTATCGGTGCTGAACGGGTTCCTGCGTCTCTATCGA
GGGAGGGACTTCATCGTTTGGAAGGTGAGAGCGAGCGTTGACCACCGAAA
CAAGCGGCAATCCAAAATATGTTAACTCTTAGAATGCTTGGTACTGTAAA
TGTTTTCACCTGTATGTGAGGCTGACACGATACGCAAGTTTATGTGGTGT
TGGACCCGTGATATCATACACCATATATATATAGCTTGCGCGCGAAAGCC
TGCAAATGTGGTTCTCGAAGAATAACACCTTCCCGGATGTGTGTTTGACT
CCAGGACAACATGGGATTTCTTCTTCAAGACCCTGACAGCACGACGACGC
CTTACTCAAGCGAACAATGTCCGGACGAGCAATCTTCGGACGTGGACCCG
GCTTCGCTATCGAGGCGCCAGCTTCAGATCCCATGCACACACGGGCTGTT
CGTGCAAACTCTCGCCAAGCCCGTAAAGCGATTGGACAGTTGGCCGTACT
CAAGGCATGTAACACTCGAGGGATTGCTAGCACATCTTACATCTTGAGCA
AATATTATCCCCGAACCTCAGAGAAGGGCAAGAGAGTACGGTTGCGAGCG
CGCAAAACTACTTAACCCACAACCAGTACCCTCTTACTATAGTGTGAAGT
TTGCAGTTTCCGTCAGGAGTAATGTTCAGTGTTTTGAATAGGAGGACTCA
GTCCCTTACTACTAAGAGTCCTTTTAATAAAGAGTGGTGGGAAAAAAGCG
TGTACAATATATATGACTGGCTTGAGTGCGGATAAAATAAAGAAGGCCAA
GAAGCTGCGCTGCATATGTGCGTGGAGGAAGTCTTAAGTCGCGAGATAAG
AGAGAACGAGAGAAGGGTGTCGAGAAGCGCGAGACGAGAGATACTAAGTG
GGTTGTAGCGAGGAGACTGCGCGAGGTGGCAATCGACAGACCGGCAGAGG
TAGGCGGTAAGAGGGATTTTCGTCAAAAGCGAGGTCGACGTTTTCCCAGC
CTTTTAATAAACTACAACGTGGTCAAGTGATTGTTCCGAGCTCAACCCGT
CCACAGCGGGAACTCGACGCTCACCTTTACTGGTCAAATGTCAAATGGGA
CTTGCAAATCGCCTTATTTACTATGTAACTGACATTCTCCACG
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Coding sequence (CDS) from alignment at P-canaliculata_contig10494:6388..10730-

>mRNA_P-canaliculata_contig10494.672.1 ID=mRNA_P-canaliculata_contig10494.672.1|Name=mRNA_P-canaliculata_contig10494.672.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1950bp|location=Sequence derived from alignment at P-canaliculata_contig10494:6388..10730- (Pelvetia canaliculata dioecious)
ATGACAGACAAGAGTGACCCCTGGCTCTCGCGTGCCACCACCCCAGAAGG
GCACGAAATTGGAGCTCGGAAGAAGCGCACCTGATGACAGACAAGAGTGA
CCCCTGGCTCTCGCGTGCCACCACCCCAGAAGGGCACGAAATTGGAGCTC
GGAAGAAGCGCACCTGGCGAGATGTGTTGGCGTGCAGCACAGTGTCCACC
TTGTTCAGAGAGACGGCGACAGACGACACAATCTGGCGAGATGTGTTGGC
GTGCAGCACAGTGTCCACCTTGTTCAGAGAGACGGCGACAGACGACACAA
TCTGGATACACTACACAAAGGAGTACACGGCAAAGCTTCTCGCCAACGCG
CAAGTGGGGCCTGCGTTCCTCATGCAGGCAGGGCTTGACAGGATACACTA
CACAAAGGAGTACACGGCAAAGCTTCTCGCCAACGCGCAAGTGGGGCCTG
CGTTCCTCATGCAGGCAGGGCTTGACAGGGTCATGGACCTGCTGTATGCG
CAGTTACCTAAGGCCTACGTGGAGATCTATCCGCACCTGCAGCCTACTCG
AGAGGTGCACGCATTTCGCATGATGGCCCGTAAATCGTGGCATCGATGGT
GGTTAACGATGGCGTGGGTACAGCACCTGCAGCGGCAAAAAAGTGCCGCG
AGCGAATACACGGGATATCCAAGGATAGAAGCGTTGGATATCGGGAGCAA
CTCTTTCAAGACGGTGGATCGATTTGGCACTGCGTTTTTCTTCCCAGAAC
AGGGTCATGGACCTGCTGTATGCGCAGTTACCTAAGGCCTACGTGGAGAT
CTATCCGCACCTGCAGCCTACTCGAGAGGTGCACGCATTTCGCATGATGG
CCCGTAAATCGTGGCATCGATGGTGGTTAACGATGGCGTGGGTACAGCAC
CTGCAGCGGCAAAAAAGTGCCGCGAGCGAATACACGGGATATCCAAGGAT
AGAAGCGTTGGATATCGGGAGCAACTCTTTCAAGACGGTGGATCGATTTG
GCACTGCGTTTTTCTTCCCAGAACAGATTCTTTCTTTCGTATCTAATCTA
TACCGGGCATGCTGCGAGGACTTCTGGGAGGAGCTCTTACAAGAAGACTC
CAAGCCCGGTCATGGAGGCGGAGACAAGGCATTCACGCAGTTGCTGCAAC
GAGGGTGTAATCGGGCCCCGCTATGGGGTGACATGCTATCGGTGCTGAAC
GGGTTCCTGCGTCTCTATCGAGGGAGGGACTTCATCGTTTGGAAGATTCT
TTCTTTCGTATCTAATCTATACCGGGCATGCTGCGAGGACTTCTGGGAGG
AGCTCTTACAAGAAGACTCCAAGCCCGGTCATGGAGGCGGAGACAAGGCA
TTCACGCAGTTGCTGCAACGAGGGTGTAATCGGGCCCCGCTATGGGGTGA
CATGCTATCGGTGCTGAACGGGTTCCTGCGTCTCTATCGAGGGAGGGACT
TCATCGTTTGGAAGGACAACATGGGATTTCTTCTTCAAGACCCTGACAGC
ACGACGACGCCTTACTCAAGCGAACAATGTCCGGACGAGCAATCTTCGGA
CGTGGACCCGGCTTCGCTATCGAGGCGCCAGCTTCAGATCCCATGCACAC
ACGGGCTGTTCGTGCAAACTCTCGCCAAGCCCGTAAAGCGATTGGACAGT
TGGCCGTACTCAAGGCATGTAACACTCGAGGGATTGCTAGCACATCTTAC
ATCTTGAGACAACATGGGATTTCTTCTTCAAGACCCTGACAGCACGACGA
CGCCTTACTCAAGCGAACAATGTCCGGACGAGCAATCTTCGGACGTGGAC
CCGGCTTCGCTATCGAGGCGCCAGCTTCAGATCCCATGCACACACGGGCT
GTTCGTGCAAACTCTCGCCAAGCCCGTAAAGCGATTGGACAGTTGGCCGT
ACTCAAGGCATGTAACACTCGAGGGATTGCTAGCACATCTTACATCTTGA
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