mRNA_P-canaliculata_contig10489.664.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10489.664.1 vs. uniprot
Match: D7FZW2_ECTSI (Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW2_ECTSI) HSP 1 Score: 379 bits (972), Expect = 2.070e-115 Identity = 229/437 (52.40%), Postives = 272/437 (62.24%), Query Frame = 1
Query: 1 GTHEHDYEAACKSQRLLLGVPVPALRHPFVQHLIRGERIMDPDAGVRRRVLPSDSSREKMRSREDMQAFDGILG------------RDGPSTVSDNCIRNNEREPSKSIASRSLRLDETNEAEDDGDNGGGRERVCGER-IEGWAGVSTLKSNKHGVQTSRPIVPRMFDLERQLLCFVLHEAVFLPALQASLWHRCPLLPPNASNDSDQTGTQADESPGSKADASSGTHLLFSRPVFDAMQCRPVNERLETLGDAWLNFYAGFVIFQDKPVMREEGMMTLLRKNVVSNARLIKCADGRGLREFIYPPRTIRGQPFEMWLPSLLPLPPAVEVSQKIIADVVEALLGAALVAGGNRSAAFLMEWLGLPTLEASNDPDEPLEHQQQQPREPEM--VYVTTKPSARLMGSVRRLEQELSYTFKHPWLCIQAITHPSWTMFD 1266
G + DY+AA KSQRLLLGVP PAL+H F QHL+RGE++MDPDAGVR RV S++ + ED DG +G D PS +D + + E +E A S + + V+ + IVPRMFDLERQLLCFVLHE++FLPALQ SL+HR P PG AD SS LL PVNERLETLGDAWLN+YAGFV+FQDKPV+ EEGMMTLLRKNVVSNARL+KCADGRGLREF+YPPR+I G+PF+MW PSLLPLPP V+ S+K IADVVEALLGAALVAGGNRSAA++MEWLGL A+ + P P + VYV TKPSARLMG++R LE+ L YTF++PWLC+QAITHPSWT+ D
Sbjct: 958 GVRKPDYDAADKSQRLLLGVPAPALKHSFAQHLVRGEKVMDPDAGVRSRVKVKRPSKKSL---EDDGQVDGAMGVTEKGEDNPEERGDAPSPAADAAGTEQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVVEAPVERPAASSESAAGEMAVEAA--IVPRMFDLERQLLCFVLHESLFLPALQTSLYHRNP--------------------PG--ADKSSNDKLL------------PVNERLETLGDAWLNYYAGFVVFQDKPVLMEEGMMTLLRKNVVSNARLLKCADGRGLREFMYPPRSILGRPFDMWSPSLLPLPPPVKASKKTIADVVEALLGAALVAGGNRSAAYIMEWLGL----AAASXXXXXXXXGEDPAAPPLPEVYVATKPSARLMGNIRLLEKRLGYTFRYPWLCMQAITHPSWTIND 1351
BLAST of mRNA_P-canaliculata_contig10489.664.1 vs. uniprot
Match: A0A2S1PRV6_FUCSE (Putative dicer (Fragment) n=1 Tax=Fucus serratus TaxID=87148 RepID=A0A2S1PRV6_FUCSE) HSP 1 Score: 371 bits (952), Expect = 5.800e-115 Identity = 233/470 (49.57%), Postives = 253/470 (53.83%), Query Frame = 1
Query: 1 GTHEHDYEAACKSQRLLLGVPVPALRHPFVQHLIRGERIMDPDAGVRRRVLPSDSSREKMRSREDMQAFDGILGRDGPSTVSDNCIRNNEREPSKSIASRS-------LRLDETNEAEDDGDNGGGRERVCGERIEGWAGVSTLKSNKHGVQTSRP-----------------------IVPRMFDLERQLLCFVLHEAVFLPALQASLWHRCPLLPPNASNDSDQTGTQADESPGSKADASS-GTHLLF---------------------------------------------------SRPVFDA--------------------------------------------------------------------------MQC---RPVNERLETLGDAWLNFYAGFVIFQDKPVMREEGMMTLLRKNVVSNARLIKCADGRGLREFIYPPRTIRGQPFEMWLPSLLP 933
G HEHDY+AACKSQRLLLGVPVPALRH FVQHL+RGER+MDPDAGVRRRVL S + + + G S D E P + R +DETNEAEDD D+GGGR+R GE IEGWAGVSTLKSNKHGVQT+R IVPRMFDLERQLLCFVLHEAVFLPALQASLWHRCPLLPPNAS+DSDQTGT+ADESPG+KADASS G L+ S P D+ + C RP+NERLETLGDAWLNFYAGFVIFQDKPVMREEGMMT LRKN+VSNARL+KCADGRGLREFIYPPRTI GQPFEMW PSLLP
Sbjct: 664 GIHEHDYKAACKSQRLLLGVPVPALRHSFVQHLMRGERVMDPDAGVRRRVLLSQRAGSE---------------KPGASIPEDEATNKPEGAPDDNGVYREGYGVHTVHEVDETNEAEDDRDDGGGRKRAGGESIEGWAGVSTLKSNKHGVQTTRAVLLLEQYTQVVCMTRQVFVSVMHIVPRMFDLERQLLCFVLHEAVFLPALQASLWHRCPLLPPNASDDSDQTGTKADESPGTKADASSSGIQLILDDASIGDGSATSMTSLPPAQTSGGVIGASLESDPTRWDRNLSADATEAPPASTPADDSTVPSGAEAINWPPNGVWNAPGGGVGIAYGPGRTMTSDHGGDLGRGEEAKVEIAAVGAVQWQGGSEGSVADTLSLLDCSLRRPINERLETLGDAWLNFYAGFVIFQDKPVMREEGMMTFLRKNIVSNARLVKCADGRGLREFIYPPRTILGQPFEMWAPSLLP 1118
BLAST of mRNA_P-canaliculata_contig10489.664.1 vs. uniprot
Match: A0A6H5KQM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM7_9PHAE) HSP 1 Score: 226 bits (576), Expect = 1.310e-61 Identity = 113/145 (77.93%), Postives = 129/145 (88.97%), Query Frame = 1
Query: 667 VFDAMQCRPVNERLETLGDAWLNFYAGFVIFQDKPVMREEGMMTLLRKNVVSNARLIKCADGRGLREFIYPPRTIRGQPFEMWLPSLLPLPPAVEVSQKIIADVVEALLGAALVAGGNRSAAFLMEWLGLPTLEASNDPDEPLEH 1101
+ D RPVNERLETLGDAWLN+YAGFV DKPV+ EEGMMTLLRKNVVSNARL+KCADGRGLREF+YPPR+I G+PF+MW PSLLPLPP V+ S+K IADVVEALLGAALVAGGNRSAA++MEWLGLPTLE+SNDP++ E+
Sbjct: 1803 LLDCSLRRPVNERLETLGDAWLNYYAGFV---DKPVLMEEGMMTLLRKNVVSNARLLKCADGRGLREFMYPPRSILGRPFDMWSPSLLPLPPPVKASKKTIADVVEALLGAALVAGGNRSAAYIMEWLGLPTLESSNDPEKAKEY 1944
BLAST of mRNA_P-canaliculata_contig10489.664.1 vs. uniprot
Match: A0A835Z3Y3_9STRA (Ribonuclease III domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Y3_9STRA) HSP 1 Score: 124 bits (312), Expect = 9.230e-28 Identity = 85/239 (35.56%), Postives = 125/239 (52.30%), Query Frame = 1
Query: 646 HLLFSRPVFDAMQCRPVNERLETLGDAWLNFYAGFVIFQDKPVMREEGMMTLLRKNVVSNARLIKCADGRGLREFIYPPRTIRGQPF-EMWLPSLLPLP-PAVEVSQKIIADVVEALLGAALVAGGNRSAAFLMEWLGLPTLEASNDPDE-------PLEHQ----------------------QQQPREP----EMVYVTTKPSARLMGSVRRLEQELSYTFKHPWLCIQAITHPSWT 1257
HL + + RP NERLETLGDAWL Y I Q +P+++EEG+++ R N+V NARL K A L +++P R++ G+PF E W+P+L+ P P +V K AD VEA+LG L+ GG + ++ ++GLPTL P+ LE Q Q P ++ ++ T+P+A + S+ LE+ L YTF + WL +QA+TH S T
Sbjct: 45 HLPVNVESVEVAVRRPANERLETLGDAWLKAYMCLFIMQTRPILQEEGLISEFRSNLVCNARLTKEAVKCDLVSYMHPLRSMLGRPFLEHWMPALMAPPSPGPQVGWKTPADCVEAILGCCLILGGEAAPQAMLRFVGLPTLSNYVTPETGAAISALTLEQAVAKAVTTGLRGWGLGGGGELVAQLQSLPPGSFFDVEFIGTEPAAATVQSLHSLERSLGYTFTNKWLPLQAVTHASST 283
BLAST of mRNA_P-canaliculata_contig10489.664.1 vs. uniprot
Match: A0A4D9CT29_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CT29_9STRA) HSP 1 Score: 105 bits (261), Expect = 1.980e-20 Identity = 77/233 (33.05%), Postives = 116/233 (49.79%), Query Frame = 1
Query: 685 CRPVNERLETLGDAWLNFYAGFVIFQDKPVMREEGMMTLLRKNVVSNARLIKCADGRGLREFIYPPRTIRGQPFEMWLPSLL-PLPP-AVEVSQKIIADVVEALLGAALVAGGNRSAAFLMEWLGLPTL--------EASNDPD-------------EPLEHQQQQP-------------------REPEMVY--VTTKPSARLMGSVRRLEQELSYTFKHPWLCIQAITHPS 1251
C+P ERLE LGD +L + V+ + +P + E ++ R N+ N RL++ A RGL I + +P+ W PSL+ PL A EV+ K+IADVVEAL+GA L+ GG R+A + WLGLP + + S+ P P + ++ Q P+ ++ KP+ L+ V +LE+ L YTF++ WL +QA+THPS
Sbjct: 1286 CKPDYERLEVLGDIYLKWVMTCVVLRKEPYLLRESLLHDFRCNLTCNRRLVRAALQRGLEGHIVLRAKVVNEPYRHWAPSLMAPLAASASEVNVKVIADVVEALIGAYLLDGGPRAADAFLRWLGLPVMCERDVCQQQRSSMPGLSDAPAAFFTAGPPPRDREKLQKAYWPLLQRCCQCWKEDNLANTPQNIHPKAVPKPATDLVLKVTKLEKFLGYTFRNKWLALQALTHPS 1518
BLAST of mRNA_P-canaliculata_contig10489.664.1 vs. uniprot
Match: T1K8D9_TETUR (Uncharacterized protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1K8D9_TETUR) HSP 1 Score: 84.7 bits (208), Expect = 9.100e-14 Identity = 63/199 (31.66%), Postives = 101/199 (50.75%), Query Frame = 1
Query: 700 ERLETLGDAWLNFYAGFVIFQDKPVMREEGMMTLLRKNVVSNARLIKCADGRGLREFIYPPRTIRGQPFEMWLPSLLPLPPAV----------EVSQKIIADVVEALLGAALVAGGNRSAAFLMEWLGLPTLEASNDPDEPLEHQQQQPREPEMVYVTTKP---SARLMGSVRRLEQELSYTFKHPWLCIQAITHPSWT 1257
ERLE +GD++L + ++F + E +T L+ +VSN L+ +GL ++I + +LP L LPP E+S K +AD++EALLGA L+ G ++A + W+G+P + N D + P + V + +A G++ +LEQ+L YTFK L I+A+THPSW+
Sbjct: 1251 ERLEIIGDSFLKYIVSALLFLQLNDLNE-ARITYLKMTLVSNFYLLHLGRSKGLAQYIND---------KTFLPRLNWLPPFYSSANRNFTEQEISDKSVADMMEALLGAHLICLGEKAAISFLSWIGMPLFTSFNF-DSLMNDNSYLPSYHDTVPIENPAEIQAAWRCGNLSKLEQKLGYTFKRKDLLIEALTHPSWS 1438
BLAST of mRNA_P-canaliculata_contig10489.664.1 vs. uniprot
Match: W4FGQ3_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FGQ3_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 2.790e-13 Identity = 58/200 (29.00%), Postives = 96/200 (48.00%), Query Frame = 1
Query: 688 RPVNERLETLGDAWLNFYAGFVIFQDKPVMREEGMMTLLRKNVVSNARLIKCADGRGLREFIYPPRTIRGQPFEMWLPSLLP-LPPAVEVSQKIIADVVEALLGAALVAGGNRSAAFLMEWLGLPTLEASNDPDE-----------PLEHQQQQPREPEMVYVTTKPSARLMGSVRRLEQELSYTFKHPWLCIQAITHPS 1251
+P ERLE LGD +L + + ++Q++P ++ EG +++LR +++ N RL K + + L ++ P +PF W+PS + P AV K IADV+E+ GA + G + +EW G E + P + + PR+ +T + + L+ L Y FK L ++AITHPS
Sbjct: 1055 KPAYERLEMLGDCFLKLESTWWLYQNRPDVKSEGTLSMLRGDMIRNDRLCKLSMDKMLHHYMIYPADFEQRPFRTWIPSCMGRTPDAVIAHLKWIADVLESTCGAYIEGAGEVAGRAFLEWTGCSVCETPQVYNRTYFPHCLPQPVPAQVDPETPRDLATWDLTHLGYDDIPERMYLLQTSLKYNFKDKRLLLEAITHPS 1254
BLAST of mRNA_P-canaliculata_contig10489.664.1 vs. uniprot
Match: UPI001D04028C (uncharacterized protein n=2 Tax=Morchella sect. Distantes TaxID=1051054 RepID=UPI001D04028C) HSP 1 Score: 80.1 bits (196), Expect = 2.750e-12 Identity = 67/194 (34.54%), Postives = 96/194 (49.48%), Query Frame = 1
Query: 700 ERLETLGDAWLNFYAGFVIFQDKPVMREEGMMTLLRKNVVSNARLIKCADGRGLREFI---------YPPRTIRGQPFEMWLPSLLPLPPAVEV-SQKIIADVVEALLGAALVAGGNRSAAFLMEWLGLPTLEASNDPDEPLEHQQQQPREPEMVYVTTKPSARLMGSVRRLEQELSYTFKHPWLCIQAITHPS 1251
+RLE LGD+ L F + + P E G+++ + VVSNA L K A G+GL +++ + PR I E + PP+ V S+K++ADVVEAL+GAA V GG A +++ GL + EPL Q R + K S +R L+ L Y FKH L ++A+THPS
Sbjct: 1031 QRLEFLGDSILKFLVSINLLDEHPSWHE-GVLSTKKAKVVSNATLAKAAQGKGLAQWVISEEFTGAKWSPRYINSANEECAKRTPDDSPPSDRVLSRKVLADVVEALIGAAYVEGGYDQALRCIDFFGLGVVL------EPL-----QSRVSSLFRKAGKTSPVKHAYLRGLQDLLGYKFKHQSLLLEAVTHPS 1212
BLAST of mRNA_P-canaliculata_contig10489.664.1 vs. uniprot
Match: A0A3N4KTJ5_9PEZI (Uncharacterized protein n=1 Tax=Morchella conica CCBAS932 TaxID=1392247 RepID=A0A3N4KTJ5_9PEZI) HSP 1 Score: 76.3 bits (186), Expect = 4.460e-11 Identity = 61/194 (31.44%), Postives = 97/194 (50.00%), Query Frame = 1
Query: 700 ERLETLGDAWLNFYAGFVIFQDKPVMREEGMMTLLRKNVVSNARLIKCADGRGLREFI---------YPPRTIRGQPFEMWLPSLLPLPPAVE-VSQKIIADVVEALLGAALVAGGNRSAAFLMEWLGLPTLEASNDPDEPLEHQQQQPREPEMVYVTTKPSARLMGSVRRLEQELSYTFKHPWLCIQAITHPS 1251
+RLE LGD+ L F + + P E G++++ + ++SN+ L K A G+GL ++I + P+ I E PP+V+ +S+K++ADVVEAL+GAA V GG A ++ GL +PL Q R + + K + ++ L+ L Y FKH L ++A+THPS
Sbjct: 725 QRLEFLGDSVLKFLVSINLLDEHPSWHE-GVLSMKKAKIISNSTLAKAAQGKGLAQWIISEEFTGAKWSPKYIHSANEECAKRMPNDCPPSVKTLSRKVLADVVEALIGAAYVEGGYDQALRCIDVFGLDLAL------KPL-----QSRASSLFHKAGKAPPVKLTYLKGLQDLLGYQFKHQSLLLEAVTHPS 906
BLAST of mRNA_P-canaliculata_contig10489.664.1 vs. uniprot
Match: A0A371H3C5_MUCPR (Endoribonuclease Dicer-like 2 (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371H3C5_MUCPR) HSP 1 Score: 75.9 bits (185), Expect = 6.100e-11 Identity = 66/209 (31.58%), Postives = 102/209 (48.80%), Query Frame = 1
Query: 700 ERLETLGDAWLNFYAGFVIFQDKPVMREEGMMTLLRKNVVSNARLIKCADGRGLREFIYPPRTIRGQPFEMWLPSLLPLPPAV----------------------EVSQKIIADVVEALLGAALVAGGNRSAAFLMEWLGLPTLEASNDPDEPLEHQQQQPREPEMVYVTTKPSARLMGSVRRLEQELSYTFKHPWLCIQAITHPSWTM 1260
E LETLGD++L + A +FQ P EG++++ R+ ++SNA L K GL FI R +PF+ P+ +P ++ +KI+ADVVEAL+GA L GG SA M+W+G+ + + P E H QP + +V+V+ LE +L YTF+ L ++A+TH S+ +
Sbjct: 936 ESLETLGDSFLKYAASQQLFQTYP-NHHEGLLSVKREKIISNASLCKLGCSSGLPGFI------RNEPFD---PNTWTIPGDKSGNFKLEELDTKGGKFYVSGKRKLKRKIVADVVEALIGAFLSTGGENSALLFMDWVGI-KVSFNIIPYE--RHFDIQPEK--LVHVSL------------LESQLKYTFRDRSLLVEALTHGSYML 1117 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10489.664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10489.664.1 >prot_P-canaliculata_contig10489.664.1 ID=prot_P-canaliculata_contig10489.664.1|Name=mRNA_P-canaliculata_contig10489.664.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=422bp GTHEHDYEAACKSQRLLLGVPVPALRHPFVQHLIRGERIMDPDAGVRRRVback to top mRNA from alignment at P-canaliculata_contig10489:1505..10728- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10489.664.1 ID=mRNA_P-canaliculata_contig10489.664.1|Name=mRNA_P-canaliculata_contig10489.664.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=9224bp|location=Sequence derived from alignment at P-canaliculata_contig10489:1505..10728- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10489:1505..10728- >mRNA_P-canaliculata_contig10489.664.1 ID=mRNA_P-canaliculata_contig10489.664.1|Name=mRNA_P-canaliculata_contig10489.664.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2532bp|location=Sequence derived from alignment at P-canaliculata_contig10489:1505..10728- (Pelvetia canaliculata dioecious)back to top |