mRNA_P-canaliculata_contig104808.662.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig104808.662.1
Unique NamemRNA_P-canaliculata_contig104808.662.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig104808.662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig104808contigP-canaliculata_contig104808:200..766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size567
Cds size567
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.787562-CDS-P-canaliculata_contig104808:199..7661622815618.787562-CDS-P-canaliculata_contig104808:199..766Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104808 200..766 -
1693494169.2647886-CDS-P-canaliculata_contig104808:199..7661693494169.2647886-CDS-P-canaliculata_contig104808:199..766Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104808 200..766 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig104808.662.1prot_P-canaliculata_contig104808.662.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig104808 200..766 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig104808.662.1

>prot_P-canaliculata_contig104808.662.1 ID=prot_P-canaliculata_contig104808.662.1|Name=mRNA_P-canaliculata_contig104808.662.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=189bp
WVWLVELIGGAAWASVILLALPGVFPALKGFDRIGHRDVLRISAAWFFVV
VERIIAKAVMYSPFALLFFLALWYIKLPSRLAFLVLAPLWLLIARYWYRV
VVEALSLTIDAELVEGKVSRQNPLHERVLEYVKAYCLRAGLDLPSSTFSK
ILFLPGSTPGIRTYGGGITETRIVIGANLLEFAMRGPHQ
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mRNA from alignment at P-canaliculata_contig104808:200..766-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig104808.662.1 ID=mRNA_P-canaliculata_contig104808.662.1|Name=mRNA_P-canaliculata_contig104808.662.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=567bp|location=Sequence derived from alignment at P-canaliculata_contig104808:200..766- (Pelvetia canaliculata dioecious)
TGGGTATGGCTCGTCGAGCTCATTGGAGGAGCTGCTTGGGCATCCGTTAT
CTTGCTCGCTCTTCCCGGCGTCTTTCCTGCTTTAAAGGGTTTCGATCGAA
TCGGTCACCGCGACGTCCTTCGTATTTCGGCGGCCTGGTTTTTCGTTGTC
GTCGAGCGAATCATCGCCAAAGCCGTTATGTACTCGCCCTTCGCTTTGCT
CTTCTTCTTGGCACTCTGGTACATCAAGCTCCCTTCTCGACTCGCATTTT
TGGTCCTAGCCCCGCTATGGCTACTGATTGCCAGATATTGGTACCGCGTC
GTTGTCGAAGCCCTGTCGTTAACCATCGATGCAGAGCTCGTAGAAGGAAA
AGTATCGCGGCAGAATCCCTTGCATGAAAGAGTTTTGGAATACGTAAAGG
CGTACTGCTTGCGCGCAGGCTTGGACCTTCCCTCCTCTACCTTTTCAAAA
ATCCTGTTCCTCCCCGGCTCCACTCCTGGGATTCGCACCTACGGTGGAGG
CATTACCGAGACGCGAATTGTGATCGGTGCCAATCTCTTAGAATTCGCTA
TGCGTGGTCCGCATCAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig104808:200..766-

>mRNA_P-canaliculata_contig104808.662.1 ID=mRNA_P-canaliculata_contig104808.662.1|Name=mRNA_P-canaliculata_contig104808.662.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1134bp|location=Sequence derived from alignment at P-canaliculata_contig104808:200..766- (Pelvetia canaliculata dioecious)
TGGGTATGGCTCGTCGAGCTCATTGGAGGAGCTGCTTGGGCATCCGTTAT
CTTGCTCGCTCTTCCCGGCGTCTTTCCTGCTTTAAAGGGTTTCGATCGAA
TCGGTCACCGCGACGTCCTTCGTATTTCGGCGGCCTGGTTTTTCGTTGTC
GTCGAGCGAATCATCGCCAAAGCCGTTATGTACTCGCCCTTCGCTTTGCT
CTTCTTCTTGGCACTCTGGTACATCAAGCTCCCTTCTCGACTCGCATTTT
TGGTCCTAGCCCCGCTATGGCTACTGATTGCCAGATATTGGTACCGCGTC
GTTGTCGAAGCCCTGTCGTTAACCATCGATGCAGAGCTCGTAGAAGGAAA
AGTATCGCGGCAGAATCCCTTGCATGAAAGAGTTTTGGAATACGTAAAGG
CGTACTGCTTGCGCGCAGGCTTGGACCTTCCCTCCTCTACCTTTTCAAAA
ATCCTGTTCCTCCCCGGCTCCACTCCTGGGATTCGCACCTACGGTGGAGG
CATTACCGAGACGCGAATTGTGATCGGTGCCAATCTCTTAGAATTCGCTA
TGCGTGGTCCGCATCAGTGGGTATGGCTCGTCGAGCTCATTGGAGGAGCT
GCTTGGGCATCCGTTATCTTGCTCGCTCTTCCCGGCGTCTTTCCTGCTTT
AAAGGGTTTCGATCGAATCGGTCACCGCGACGTCCTTCGTATTTCGGCGG
CCTGGTTTTTCGTTGTCGTCGAGCGAATCATCGCCAAAGCCGTTATGTAC
TCGCCCTTCGCTTTGCTCTTCTTCTTGGCACTCTGGTACATCAAGCTCCC
TTCTCGACTCGCATTTTTGGTCCTAGCCCCGCTATGGCTACTGATTGCCA
GATATTGGTACCGCGTCGTTGTCGAAGCCCTGTCGTTAACCATCGATGCA
GAGCTCGTAGAAGGAAAAGTATCGCGGCAGAATCCCTTGCATGAAAGAGT
TTTGGAATACGTAAAGGCGTACTGCTTGCGCGCAGGCTTGGACCTTCCCT
CCTCTACCTTTTCAAAAATCCTGTTCCTCCCCGGCTCCACTCCTGGGATT
CGCACCTACGGTGGAGGCATTACCGAGACGCGAATTGTGATCGGTGCCAA
TCTCTTAGAATTCGCTATGCGTGGTCCGCATCAG
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