mRNA_P-canaliculata_contig104635.636.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig104635.636.1
Unique NamemRNA_P-canaliculata_contig104635.636.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig104635.636.1 vs. uniprot
Match: UPI001C62ED68 (HdeA/HdeB family chaperone n=1 Tax=Qipengyuania flava TaxID=192812 RepID=UPI001C62ED68)

HSP 1 Score: 102 bits (254), Expect = 8.940e-26
Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:    1 AAQTQDVNTPAEPTEPIAFDIAAISCWDITTTEDDEQAFAATLLYGYHAGSTGTNEQTSDGIEAAIVRMVEFCVENPDANALDGLK 258
            AA  +   T   P EP+ FD+A I+CWD++T+ED+++AFA+T+LYGY AG  G + Q S+ +EA IV  +EFCVENPD+ AL+  K
Sbjct:   72 AATEETAETAEAPAEPVEFDLAQITCWDLSTSEDEDRAFASTMLYGYAAGQAGQSAQNSEEVEARIVSAIEFCVENPDSMALEAFK 157
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BLAST of mRNA_P-canaliculata_contig104635.636.1 vs. uniprot
Match: A0A1B6ZER0_9SPHN (Uncharacterized protein n=1 Tax=Sphingomonadales bacterium EhC05 TaxID=1849171 RepID=A0A1B6ZER0_9SPHN)

HSP 1 Score: 54.7 bits (130), Expect = 1.550e-7
Identity = 26/80 (32.50%), Postives = 42/80 (52.50%), Query Frame = 1 
Query:    1 AAQTQDVNTPAEPTEPIA-FDIAAISCWDITTTEDDEQAFAATLLYGYHAGSTGTNEQTSDGIEAAIVRMVEFCVENPDA 237
            +A  QD     +   P A  D+  ++CWDITT  +D++     LLYG   G  G +  + + ++ AIV  +  CV+ PD+
Sbjct:   26 SAIAQDAGQEIDALAPAASIDLKEVTCWDITTLNEDDRGATMILLYGQAIGEKGMSAISPEAVQVAIVTTIIDCVDKPDS 105
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig104635.636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001C62ED688.940e-2651.16HdeA/HdeB family chaperone n=1 Tax=Qipengyuania fl... [more]
A0A1B6ZER0_9SPHN1.550e-732.50Uncharacterized protein n=1 Tax=Sphingomonadales b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig104635contigP-canaliculata_contig104635:537..809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.970824-CDS-P-canaliculata_contig104635:536..8091622815616.970824-CDS-P-canaliculata_contig104635:536..809Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104635 537..809 -
1693494168.245899-CDS-P-canaliculata_contig104635:536..8091693494168.245899-CDS-P-canaliculata_contig104635:536..809Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104635 537..809 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig104635.636.1prot_P-canaliculata_contig104635.636.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig104635 537..809 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig104635.636.1

>prot_P-canaliculata_contig104635.636.1 ID=prot_P-canaliculata_contig104635.636.1|Name=mRNA_P-canaliculata_contig104635.636.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=91bp
AAQTQDVNTPAEPTEPIAFDIAAISCWDITTTEDDEQAFAATLLYGYHAG
STGTNEQTSDGIEAAIVRMVEFCVENPDANALDGLKSSPE*
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mRNA from alignment at P-canaliculata_contig104635:537..809-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig104635.636.1 ID=mRNA_P-canaliculata_contig104635.636.1|Name=mRNA_P-canaliculata_contig104635.636.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=273bp|location=Sequence derived from alignment at P-canaliculata_contig104635:537..809- (Pelvetia canaliculata dioecious)
GCCGCACAAACGCAAGATGTGAACACGCCGGCAGAACCGACCGAACCAAT
TGCATTTGATATCGCAGCCATATCGTGCTGGGACATCACCACTACGGAAG
ATGATGAGCAGGCTTTCGCTGCCACATTGCTGTACGGTTACCATGCCGGA
TCAACCGGCACCAACGAGCAGACTAGCGACGGAATTGAGGCCGCCATCGT
GCGTATGGTGGAGTTCTGCGTCGAGAATCCGGATGCGAACGCACTGGACG
GCCTAAAGTCTAGTCCTGAGTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig104635:537..809-

>mRNA_P-canaliculata_contig104635.636.1 ID=mRNA_P-canaliculata_contig104635.636.1|Name=mRNA_P-canaliculata_contig104635.636.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at P-canaliculata_contig104635:537..809- (Pelvetia canaliculata dioecious)
GCCGCACAAACGCAAGATGTGAACACGCCGGCAGAACCGACCGAACCAAT
TGCATTTGATATCGCAGCCATATCGTGCTGGGACATCACCACTACGGAAG
ATGATGAGCAGGCTTTCGCTGCCACATTGCTGTACGGTTACCATGCCGGA
TCAACCGGCACCAACGAGCAGACTAGCGACGGAATTGAGGCCGCCATCGT
GCGTATGGTGGAGTTCTGCGTCGAGAATCCGGATGCGAACGCACTGGACG
GCCTAAAGTCTAGTCCTGAGTAAGCCGCACAAACGCAAGATGTGAACACG
CCGGCAGAACCGACCGAACCAATTGCATTTGATATCGCAGCCATATCGTG
CTGGGACATCACCACTACGGAAGATGATGAGCAGGCTTTCGCTGCCACAT
TGCTGTACGGTTACCATGCCGGATCAACCGGCACCAACGAGCAGACTAGC
GACGGAATTGAGGCCGCCATCGTGCGTATGGTGGAGTTCTGCGTCGAGAA
TCCGGATGCGAACGCACTGGACGGCCTAAAGTCTAGTCCTGAGTAA
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