mRNA_P-canaliculata_contig104377.600.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig104377.600.1
Unique NamemRNA_P-canaliculata_contig104377.600.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig104377.600.1 vs. uniprot
Match: A0A848V117_9PROT (Elongation factor G n=2 Tax=Hellea TaxID=574559 RepID=A0A848V117_9PROT)

HSP 1 Score: 518 bits (1334), Expect = 5.020e-179
Identity = 257/272 (94.49%), Postives = 263/272 (96.69%), Query Frame = 1
Query:    1 MAREYDLKDYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFWDNKRLNIIDTPGHVDFTIEVERSLRVLDGAVALLDANAGVEPQTETVWRQADKYNVPRMIFINKMDKIGADFYASVQSVKDRLGGNALEMQLPIGAEDQFVGVVDLVKNVAYTWPVDTELGAKYDTVEVPEEMKAKTAEYREALIEAVADMDDAVMEAYFEGEMPDVETIQRLVREATIANKVVPVFCGTAFKNKGVQPL 816
            MAREYDLKDYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFW  KRLNIIDTPGHVDFTIEVERSLRVLDGAVALLDANAGVEPQTETVWRQADKYNVPRMIFINKMDKIGADFYASVQSVKDRLGGNALEMQLPIGAEDQF GVVDLVKNVAYTWP D+ELGA +DTVE+P +M  K A+YREALIEAVA+MDDAVMEAYFEGEMPDVETIQRLVREATIANKVVPVFCGTAFKNKGVQPL
Sbjct:    1 MAREYDLKDYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFWAGKRLNIIDTPGHVDFTIEVERSLRVLDGAVALLDANAGVEPQTETVWRQADKYNVPRMIFINKMDKIGADFYASVQSVKDRLGGNALEMQLPIGAEDQFKGVVDLVKNVAYTWPEDSELGATFDTVEIPADMADKAAKYREALIEAVAEMDDAVMEAYFEGEMPDVETIQRLVREATIANKVVPVFCGTAFKNKGVQPL 272          
BLAST of mRNA_P-canaliculata_contig104377.600.1 vs. uniprot
Match: A0A420WFN5_9PROT (Elongation factor G n=3 Tax=Robiginitomaculaceae TaxID=2800062 RepID=A0A420WFN5_9PROT)

HSP 1 Score: 502 bits (1293), Expect = 8.020e-173
Identity = 250/272 (91.91%), Postives = 257/272 (94.49%), Query Frame = 1
Query:    1 MAREYDLKDYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFWDNKRLNIIDTPGHVDFTIEVERSLRVLDGAVALLDANAGVEPQTETVWRQADKYNVPRMIFINKMDKIGADFYASVQSVKDRLGGNALEMQLPIGAEDQFVGVVDLVKNVAYTWPVDTELGAKYDTVEVPEEMKAKTAEYREALIEAVADMDDAVMEAYFEGEMPDVETIQRLVREATIANKVVPVFCGTAFKNKGVQPL 816
            MAREY+LKDYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFW +KRLNIIDTPGHVDFTIEVERSLRVLDGAVALLDANAGVEPQTETVWRQADKY VPRMIFINKMDK+GADFYASVQSVKDRLGGNALEMQLPIG+EDQF G+VDLV+NVAYTW  D ELGAKYDT  VPE+M  K  EYR ALIEAVADMDDAVMEAYFEGEMPDV TIQRLVR ATIANKVVPVFCGTAFKNKGVQPL
Sbjct:    1 MAREYELKDYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFWKDKRLNIIDTPGHVDFTIEVERSLRVLDGAVALLDANAGVEPQTETVWRQADKYKVPRMIFINKMDKLGADFYASVQSVKDRLGGNALEMQLPIGSEDQFKGMVDLVENVAYTWEDDAELGAKYDTGPVPEDMLEKVEEYRTALIEAVADMDDAVMEAYFEGEMPDVATIQRLVRAATIANKVVPVFCGTAFKNKGVQPL 272          
BLAST of mRNA_P-canaliculata_contig104377.600.1 vs. uniprot
Match: UPI00036A559E (elongation factor G n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI00036A559E)

HSP 1 Score: 491 bits (1265), Expect = 1.380e-168
Identity = 242/272 (88.97%), Postives = 253/272 (93.01%), Query Frame = 1
Query:    1 MAREYDLKDYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFWDNKRLNIIDTPGHVDFTIEVERSLRVLDGAVALLDANAGVEPQTETVWRQADKYNVPRMIFINKMDKIGADFYASVQSVKDRLGGNALEMQLPIGAEDQFVGVVDLVKNVAYTWPVDTELGAKYDTVEVPEEMKAKTAEYREALIEAVADMDDAVMEAYFEGEMPDVETIQRLVREATIANKVVPVFCGTAFKNKGVQPL 816
            MAREY+LKDYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFW  KRLNIIDTPGHVDFTIEVERSLRVLDGAV LLDANAGVEPQTETVWRQADKY VPRM+FINKMDK GADFYASV+SVK RLGGNALEMQLPIG+E +F GVVDLV+NVAY WP D +LGAKYDTVE+P +M  K  EYR ALIEAVADMDDAVMEAYFEGEMPD  TI+RLVR+ATIANKVVPVFCGTAFKNKGVQPL
Sbjct:    1 MAREYELKDYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFWAGKRLNIIDTPGHVDFTIEVERSLRVLDGAVTLLDANAGVEPQTETVWRQADKYKVPRMVFINKMDKTGADFYASVESVKKRLGGNALEMQLPIGSETEFRGVVDLVENVAYVWPDDADLGAKYDTVEIPADMVEKAKEYRTALIEAVADMDDAVMEAYFEGEMPDAATIKRLVRKATIANKVVPVFCGTAFKNKGVQPL 272          
BLAST of mRNA_P-canaliculata_contig104377.600.1 vs. uniprot
Match: A0A7C5LXC7_9PROT (GTP-binding protein (Fragment) n=1 Tax=Hellea balneolensis TaxID=287478 RepID=A0A7C5LXC7_9PROT)

HSP 1 Score: 464 bits (1195), Expect = 1.210e-163
Identity = 229/272 (84.19%), Postives = 245/272 (90.07%), Query Frame = 1
Query:    1 MAREYDLKDYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFWDNKRLNIIDTPGHVDFTIEVERSLRVLDGAVALLDANAGVEPQTETVWRQADKYNVPRMIFINKMDKIGADFYASVQSVKDRLGGNALEMQLPIGAEDQFVGVVDLVKNVAYTWPVDTELGAKYDTVEVPEEMKAKTAEYREALIEAVADMDDAVMEAYFEGEMPDVETIQRLVREATIANKVVPVFCGTAFKNKGVQPL 816
            MAREY L+DYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFW +KRLNIIDTPGHVDFTIEVERSLRVLDGAVALLDANAGVEPQTETVWRQADKYNVPRMIFINKMDKIGADFYASV SV+ RLG NALEMQLPIGAE++F GVVDLVK  AY W   ++LGA Y+TVE+P E+  K AEY E LIEAV +MDD VMEAYFEG MP VE IQ L+R+ TIA ++VP+FCGTAFKNKGVQPL
Sbjct:    1 MAREYKLEDYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFWRDKRLNIIDTPGHVDFTIEVERSLRVLDGAVALLDANAGVEPQTETVWRQADKYNVPRMIFINKMDKIGADFYASVASVRKRLGANALEMQLPIGAENEFKGVVDLVKMCAYVWEDTSDLGASYETVEIPAELADKAAEYHEKLIEAVVEMDDDVMEAYFEGNMPSVEQIQALIRKGTIACEIVPIFCGTAFKNKGVQPL 272          
BLAST of mRNA_P-canaliculata_contig104377.600.1 vs. uniprot
Match: A0A2G2GDR2_9PROT (Elongation factor G n=2 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GDR2_9PROT)

HSP 1 Score: 448 bits (1153), Expect = 1.130e-151
Identity = 216/272 (79.41%), Postives = 241/272 (88.60%), Query Frame = 1
Query:    1 MAREYDLKDYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFWDNKRLNIIDTPGHVDFTIEVERSLRVLDGAVALLDANAGVEPQTETVWRQADKYNVPRMIFINKMDKIGADFYASVQSVKDRLGGNALEMQLPIGAEDQFVGVVDLVKNVAYTWPVDTELGAKYDTVEVPEEMKAKTAEYREALIEAVADMDDAVMEAYFEGEMPDVETIQRLVREATIANKVVPVFCGTAFKNKGVQPL 816
            M REY L+DYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFW  KRLNIIDTPGHVDFTIEVERSLRVLDGAV LLDANAGVEPQTETVWRQADKYNVPRM+FINKMDK+GADFYASV+S++ RLG NALEMQLPIGAE++F G++DLV+  AY W  D +LGAK+DTV++P ++  K AEYRE L+EAV + DD +MEAY EG  P  E I+ +VR ATI+ +VVP+FCGTAFKNKGVQPL
Sbjct:    1 MTREYKLEDYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFWKGKRLNIIDTPGHVDFTIEVERSLRVLDGAVTLLDANAGVEPQTETVWRQADKYNVPRMVFINKMDKLGADFYASVESIRKRLGANALEMQLPIGAENEFSGMIDLVEMHAYVWAEDADLGAKFDTVDIPADLADKAAEYREKLVEAVVEYDDDLMEAYLEGTEPTNEQIKAIVRAATISGEVVPIFCGTAFKNKGVQPL 272          
BLAST of mRNA_P-canaliculata_contig104377.600.1 vs. uniprot
Match: A0A7Y1SLP5_9PROT (Elongation factor G n=2 Tax=Bacteria TaxID=2 RepID=A0A7Y1SLP5_9PROT)

HSP 1 Score: 438 bits (1126), Expect = 1.340e-147
Identity = 213/272 (78.31%), Postives = 231/272 (84.93%), Query Frame = 1
Query:    1 MAREYDLKDYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFWDNKRLNIIDTPGHVDFTIEVERSLRVLDGAVALLDANAGVEPQTETVWRQADKYNVPRMIFINKMDKIGADFYASVQSVKDRLGGNALEMQLPIGAEDQFVGVVDLVKNVAYTWPVDTELGAKYDTVEVPEEMKAKTAEYREALIEAVADMDDAVMEAYFEGEMPDVETIQRLVREATIANKVVPVFCGTAFKNKGVQPL 816
            MAREY L+DYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFW +KRLNIIDTPGHVDFTIEVERSLRVLDGAVALLDANAGVEPQTETVWRQADKYNVPRMIF NKMDK+GADFYAS  SVK RLG N + MQLPIGAE+ F G+VDLVK  AY W    +LGA YDT+++P ++  K  EYRE LIE V + DD  MEAY EG  P  E +  L+R+ TIA  +VP+FCGTAFKNKGVQPL
Sbjct:    1 MAREYKLEDYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFWKDKRLNIIDTPGHVDFTIEVERSLRVLDGAVALLDANAGVEPQTETVWRQADKYNVPRMIFCNKMDKLGADFYASFDSVKKRLGANVVAMQLPIGAENDFKGMVDLVKMKAYVWEDVADLGASYDTIDIPADLADKAVEYRETLIETVVEFDDEAMEAYLEGNEPSEEKLMALIRKGTIAGDIVPMFCGTAFKNKGVQPL 272          
BLAST of mRNA_P-canaliculata_contig104377.600.1 vs. uniprot
Match: A0A2G1Y601_9PROT (Elongation factor G n=5 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G1Y601_9PROT)

HSP 1 Score: 437 bits (1124), Expect = 2.680e-147
Identity = 212/272 (77.94%), Postives = 238/272 (87.50%), Query Frame = 1
Query:    1 MAREYDLKDYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFWDNKRLNIIDTPGHVDFTIEVERSLRVLDGAVALLDANAGVEPQTETVWRQADKYNVPRMIFINKMDKIGADFYASVQSVKDRLGGNALEMQLPIGAEDQFVGVVDLVKNVAYTWPVDTELGAKYDTVEVPEEMKAKTAEYREALIEAVADMDDAVMEAYFEGEMPDVETIQRLVREATIANKVVPVFCGTAFKNKGVQPL 816
            M+REY ++DYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFW  KRLNIIDTPGHVDFTIEVERSLRVLDGAVALLDANAGVEPQTETVWRQADKYNVPRMIF+NKMDK+GADF+AS +SV  RLG  AL MQLPIGAE+ FVG+VDL++  AY W  D ELGAK+ T ++P ++  + AEYRE L+E VA++DD VMEAY EGE    ET++RL+R+ T+   +VPVFCGTAFKNKGVQPL
Sbjct:    1 MSREYKIEDYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFWRGKRLNIIDTPGHVDFTIEVERSLRVLDGAVALLDANAGVEPQTETVWRQADKYNVPRMIFVNKMDKLGADFFASFESVVKRLGAPALAMQLPIGAENDFVGMVDLIEMCAYVWADDAELGAKFXTTDIPADLVDQAAEYREKLVEMVAELDDDVMEAYLEGETIXNETLKRLIRKGTLEGTLVPVFCGTAFKNKGVQPL 272          
BLAST of mRNA_P-canaliculata_contig104377.600.1 vs. uniprot
Match: A0A7C5MVF3_9HYPH (GTP-binding protein (Fragment) n=1 Tax=Devosia sp. TaxID=1871048 RepID=A0A7C5MVF3_9HYPH)

HSP 1 Score: 412 bits (1060), Expect = 2.200e-143
Identity = 200/277 (72.20%), Postives = 234/277 (84.48%), Query Frame = 1
Query:    1 MAREYDLKDYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFWDNK-----RLNIIDTPGHVDFTIEVERSLRVLDGAVALLDANAGVEPQTETVWRQADKYNVPRMIFINKMDKIGADFYASVQSVKDRLGGNALEMQLPIGAEDQFVGVVDLVKNVAYTWPVDTELGAKYDTVEVPEEMKAKTAEYREALIEAVADMDDAVMEAYFEGEMPDVETIQRLVREATIANKVVPVFCGTAFKNKGVQPL 816
            MAR YD+K+YRNFGIMAHIDAGKTT TERILYYTGK+HKI EVHDGAATMDWMEQEQERGITITSAATT FW ++     R NIIDTPGHVDFTIEVERSLRVLDGA+ALLDANAGVEPQTETVWRQADKY+VPRMIF+NKMDK+GADFY SV+ ++ RLGG +L +QLPIGAE++F GV+DL++  A  W  D  LGA++D VE+PE+M+ K  E+RE +IE   D+DDA  EAY EGEMPD++T++RL+R+ TI     PV CG+AFKNKGVQPL
Sbjct:    1 MARVYDIKNYRNFGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTTFWKDRKGVEHRFNIIDTPGHVDFTIEVERSLRVLDGAIALLDANAGVEPQTETVWRQADKYDVPRMIFVNKMDKVGADFYRSVEMIESRLGGKSLVLQLPIGAENEFSGVIDLIEMKALVWR-DESLGAQWDVVEIPEDMREKAEEFREQMIERAVDIDDAATEAYLEGEMPDIDTLRRLIRQGTIGVDFFPVLCGSAFKNKGVQPL 276          
BLAST of mRNA_P-canaliculata_contig104377.600.1 vs. uniprot
Match: A0A3B1B8Q2_9ZZZZ (Translation elongation factor G (Fragment) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1B8Q2_9ZZZZ)

HSP 1 Score: 409 bits (1051), Expect = 3.330e-140
Identity = 201/277 (72.56%), Postives = 233/277 (84.12%), Query Frame = 1
Query:    1 MAREYDLKDYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFWDNK-----RLNIIDTPGHVDFTIEVERSLRVLDGAVALLDANAGVEPQTETVWRQADKYNVPRMIFINKMDKIGADFYASVQSVKDRLGGNALEMQLPIGAEDQFVGVVDLVKNVAYTWPVDTELGAKYDTVEVPEEMKAKTAEYREALIEAVADMDDAVMEAYFEGEMPDVETIQRLVREATIANKVVPVFCGTAFKNKGVQPL 816
            MAREYD+KDYRNFGIMAHIDAGKTT TERILYYTGK+HKI EVHDGAATMDWMEQEQERGITITSAATT FW+++     R NIIDTPGHVDFTIEVERSLRVLDGA+ALLDANAGVEPQTETVWRQADKY VPRMIF+NKMDKIGADFY  V+ ++ RLGG  + MQLPIGAE +FVGVVDL++  A  W  + +LGA++D VE+P+++K +  EYR  +IE +AD+DD VM AY EGEMPD +TI++L+R+ T      PV CG+AFKNKGVQPL
Sbjct:    1 MAREYDIKDYRNFGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTTFWNDRNGKKHRFNIIDTPGHVDFTIEVERSLRVLDGAIALLDANAGVEPQTETVWRQADKYKVPRMIFVNKMDKIGADFYRCVEMIESRLGGTPVVMQLPIGAESEFVGVVDLIEMHALVWRTE-DLGAQWDIVEIPDDLKERAEEYRMKMIETIADLDDDVMIAYLEGEMPDNDTIRKLIRKGTCDVAFFPVLCGSAFKNKGVQPL 276          
BLAST of mRNA_P-canaliculata_contig104377.600.1 vs. uniprot
Match: A0A7Y2QAN8_9HYPH (Elongation factor G (Fragment) n=1 Tax=Rhizobium sp. SEMIA 4085 TaxID=2137761 RepID=A0A7Y2QAN8_9HYPH)

HSP 1 Score: 408 bits (1049), Expect = 6.410e-139
Identity = 206/277 (74.37%), Postives = 229/277 (82.67%), Query Frame = 1
Query:    1 MAREYDLKDYRNFGIMAHIDAGKTTCTERILYYTGKNHKIAEVHDGAATMDWMEQEQERGITITSAATTCFWDNK-----RLNIIDTPGHVDFTIEVERSLRVLDGAVALLDANAGVEPQTETVWRQADKYNVPRMIFINKMDKIGADFYASVQSVKDRLGGNALEMQLPIGAEDQFVGVVDLVKNVAYTWPVDTELGAKYDTVEVPEEMKAKTAEYREALIEAVADMDDAVMEAYFEGEMPDVETIQRLVREATIANKVVPVFCGTAFKNKGVQPL 816
            MAREY ++DYRNFGIMAHIDAGKTT TERILYYTGK+HKI EVHDGAATMDWMEQEQERGITITSAATT FW  +     R NIIDTPGHVDFTIEVERSLRVLDGA+ALLDANAGVEPQTETVWRQA+KY+VPRMIF NKMDK GADFY SV+ +K RLG  A+ MQLPIGAE +F GVVDL++  A  W  D  LGA++D VE+PE+MKAK  EYRE LIE V ++D+A MEAY EG MPD + I+ LVR  TI  K  P+FCGTAFKNKGVQPL
Sbjct:    1 MAREYKIEDYRNFGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTTFWKGRDGKMRRFNIIDTPGHVDFTIEVERSLRVLDGAIALLDANAGVEPQTETVWRQAEKYHVPRMIFCNKMDKTGADFYRSVEMIKTRLGATAVVMQLPIGAETEFKGVVDLIEMNALIWR-DESLGAQWDVVEIPEDMKAKAEEYREKLIETVVEIDEAAMEAYLEGNMPDNDQIRALVRRGTIDVKFHPMFCGTAFKNKGVQPL 276          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig104377.600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A848V117_9PROT5.020e-17994.49Elongation factor G n=2 Tax=Hellea TaxID=574559 Re... [more]
A0A420WFN5_9PROT8.020e-17391.91Elongation factor G n=3 Tax=Robiginitomaculaceae T... [more]
UPI00036A559E1.380e-16888.97elongation factor G n=1 Tax=Robiginitomaculum anta... [more]
A0A7C5LXC7_9PROT1.210e-16384.19GTP-binding protein (Fragment) n=1 Tax=Hellea baln... [more]
A0A2G2GDR2_9PROT1.130e-15179.41Elongation factor G n=2 Tax=Robiginitomaculum sp. ... [more]
A0A7Y1SLP5_9PROT1.340e-14778.31Elongation factor G n=2 Tax=Bacteria TaxID=2 RepID... [more]
A0A2G1Y601_9PROT2.680e-14777.94Elongation factor G n=5 Tax=Robiginitomaculum sp. ... [more]
A0A7C5MVF3_9HYPH2.200e-14372.20GTP-binding protein (Fragment) n=1 Tax=Devosia sp.... [more]
A0A3B1B8Q2_9ZZZZ3.330e-14072.56Translation elongation factor G (Fragment) n=1 Tax... [more]
A0A7Y2QAN8_9HYPH6.410e-13974.37Elongation factor G (Fragment) n=1 Tax=Rhizobium s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig104377contigP-canaliculata_contig104377:1..816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size816
Cds size174
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig104377.600.1prot_P-canaliculata_contig104377.600.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig104377 585..758 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.4347436-UTR-P-canaliculata_contig104377:0..5841622815614.4347436-UTR-P-canaliculata_contig104377:0..584Pelvetia canaliculata dioeciousUTRP-canaliculata_contig104377 1..584 -
1693494166.9104006-UTR-P-canaliculata_contig104377:0..5841693494166.9104006-UTR-P-canaliculata_contig104377:0..584Pelvetia canaliculata dioeciousUTRP-canaliculata_contig104377 1..584 -
1622815614.4617128-UTR-P-canaliculata_contig104377:758..8161622815614.4617128-UTR-P-canaliculata_contig104377:758..816Pelvetia canaliculata dioeciousUTRP-canaliculata_contig104377 759..816 -
1693494166.9306653-UTR-P-canaliculata_contig104377:758..8161693494166.9306653-UTR-P-canaliculata_contig104377:758..816Pelvetia canaliculata dioeciousUTRP-canaliculata_contig104377 759..816 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.4475334-CDS-P-canaliculata_contig104377:584..7581622815614.4475334-CDS-P-canaliculata_contig104377:584..758Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104377 585..758 -
1693494166.920713-CDS-P-canaliculata_contig104377:584..7581693494166.920713-CDS-P-canaliculata_contig104377:584..758Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104377 585..758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig104377.600.1

>prot_P-canaliculata_contig104377.600.1 ID=prot_P-canaliculata_contig104377.600.1|Name=mRNA_P-canaliculata_contig104377.600.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=58bp
MRAKPHVPSGFSTTPVRTIKLRKCMTAQPPWIGWSKSKSAASRSPLQRRP
VFGTISV*
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mRNA from alignment at P-canaliculata_contig104377:1..816-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig104377.600.1 ID=mRNA_P-canaliculata_contig104377.600.1|Name=mRNA_P-canaliculata_contig104377.600.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=816bp|location=Sequence derived from alignment at P-canaliculata_contig104377:1..816- (Pelvetia canaliculata dioecious)
ATGGCTCGCGAATACGATCTTAAAGACTACCGGAACTTCGGTATCATGGC CCACATTGATGCGGGCAAAACCACATGTACCGAGCGGATTCTCTACTACA CCGGTAAGAACCATAAAATTGCGGAAGTGCATGACGGCGCAGCCACCATG GATTGGATGGAGCAAGAGCAAGAGCGCGGCATCACGATCACCTCTGCAGC GACGACCTGTTTTTGGGACAATAAGCGTCTGAACATCATTGACACACCGG GTCACGTTGACTTTACAATTGAAGTTGAGCGCTCCTTGCGTGTTTTGGAT GGCGCAGTTGCGCTTCTTGATGCCAATGCCGGTGTTGAGCCGCAAACAGA GACGGTTTGGCGTCAAGCTGACAAATATAACGTCCCGCGTATGATCTTCA TCAATAAGATGGATAAAATCGGCGCTGACTTCTACGCGTCTGTCCAGTCG GTCAAAGACCGCCTCGGCGGCAATGCGCTGGAAATGCAGCTGCCAATCGG CGCTGAAGACCAATTCGTCGGTGTTGTCGATCTCGTGAAAAATGTCGCCT ACACATGGCCTGTCGATACAGAGCTCGGCGCGAAATACGACACGGTCGAA GTGCCTGAAGAAATGAAGGCGAAAACGGCTGAATATCGCGAAGCGCTCAT CGAGGCTGTCGCCGATATGGATGACGCCGTCATGGAGGCTTACTTCGAAG GCGAAATGCCTGATGTTGAAACGATCCAGCGTCTCGTGCGTGAAGCGACA ATCGCCAATAAGGTTGTCCCTGTTTTCTGTGGCACAGCGTTTAAAAACAA GGGTGTTCAGCCTTTG
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Coding sequence (CDS) from alignment at P-canaliculata_contig104377:1..816-

>mRNA_P-canaliculata_contig104377.600.1 ID=mRNA_P-canaliculata_contig104377.600.1|Name=mRNA_P-canaliculata_contig104377.600.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at P-canaliculata_contig104377:1..816- (Pelvetia canaliculata dioecious)
ATGCGGGCAAAACCACATGTACCGAGCGGATTCTCTACTACACCGGTAAG
AACCATAAAATTGCGGAAGTGCATGACGGCGCAGCCACCATGGATTGGAT
GGAGCAAGAGCAAGAGCGCGGCATCACGATCACCTCTGCAGCGACGACCT
GTTTTTGGGACAATAAGCGTCTGAATGCGGGCAAAACCACATGTACCGAG
CGGATTCTCTACTACACCGGTAAGAACCATAAAATTGCGGAAGTGCATGA
CGGCGCAGCCACCATGGATTGGATGGAGCAAGAGCAAGAGCGCGGCATCA
CGATCACCTCTGCAGCGACGACCTGTTTTTGGGACAATAAGCGTCTGA
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