mRNA_P-canaliculata_contig104195.574.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig104195.574.1
Unique NamemRNA_P-canaliculata_contig104195.574.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig104195.574.1 vs. uniprot
Match: A0A518IYC7_9BACT (Serine-aspartate repeat-containing protein D n=3 Tax=Rosistilla TaxID=2795779 RepID=A0A518IYC7_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 1.410e-10
Identity = 27/38 (71.05%), Postives = 35/38 (92.11%), Query Frame = 1
Query:    1 DADGSLLAETLTDANGDYEFTGLAPGNYSVVEVQPDGF 114
            DADG+L+A TLT+ANG YEFT LAPG+YSV++VQP+G+
Sbjct: 1106 DADGTLIATTLTNANGFYEFTDLAPGSYSVIQVQPNGY 1143          
BLAST of mRNA_P-canaliculata_contig104195.574.1 vs. uniprot
Match: A0A2E8CVP5_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8CVP5_9PLAN)

HSP 1 Score: 57.8 bits (138), Expect = 1.120e-8
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    1 DADGSLLAETLTDANGDYEFTGLAPGNYSVVEVQP 105
            DA G ++AET TDANG+YEFTGL PG YSVVEV P
Sbjct:  408 DAQGLIVAETKTDANGEYEFTGLHPGEYSVVEVTP 442          
BLAST of mRNA_P-canaliculata_contig104195.574.1 vs. uniprot
Match: UPI001E2CB354 (SpaA isopeptide-forming pilin-related protein n=1 Tax=unclassified Blastopirellula TaxID=2647022 RepID=UPI001E2CB354)

HSP 1 Score: 57.0 bits (136), Expect = 2.100e-8
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1
Query:    1 DADGSLLAETLTDANGDYEFTGLAPGNYSVVEVQPDG 111
            DA G+L+AET TDANGDY F GL PG Y+VVE+ P G
Sbjct:  875 DAAGNLIAETTTDANGDYTFDGLLPGTYTVVEITPAG 911          
BLAST of mRNA_P-canaliculata_contig104195.574.1 vs. uniprot
Match: A0A3M1MIQ2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1MIQ2_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 2.100e-8
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 1
Query:    4 ADGSLLAETLTDANGDYEFTGLAPGNYSVVEVQPDGF 114
            A G +LA T TDANG Y F GL PGNY+V E+QPDGF
Sbjct:  675 ASGQVLATTRTDANGAYRFDGLLPGNYTVREIQPDGF 711          
BLAST of mRNA_P-canaliculata_contig104195.574.1 vs. uniprot
Match: A0A5C6CH48_9BACT (Serine-aspartate repeat-containing protein D n=2 Tax=Novipirellula galeiformis TaxID=2528004 RepID=A0A5C6CH48_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 2.870e-8
Identity = 24/38 (63.16%), Postives = 26/38 (68.42%), Query Frame = 1
Query:    1 DADGSLLAETLTDANGDYEFTGLAPGNYSVVEVQPDGF 114
            D DG +LA T TDANG Y F GL PG Y + E QPDGF
Sbjct: 1001 DGDGRVLARTTTDANGQYNFEGLRPGEYQIFEEQPDGF 1038          
BLAST of mRNA_P-canaliculata_contig104195.574.1 vs. uniprot
Match: A0A847Y9A3_9BACT (Fibrinogen-binding protein (Fragment) n=1 Tax=Thermogutta sp. TaxID=1962930 RepID=A0A847Y9A3_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 3.950e-8
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1
Query:    1 DADGSLLAETLTDANGDYEFTGLAPGNYSVVEVQPDGF 114
            DA G+++A TLTDA G Y F GLAPG Y+V EVQP+G+
Sbjct:  252 DASGTIIASTLTDAEGRYRFEGLAPGYYAVEEVQPEGY 289          
BLAST of mRNA_P-canaliculata_contig104195.574.1 vs. uniprot
Match: A0A7Y5SKL2_9BACT (Carboxypeptidase regulatory-like domain-containing protein n=1 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A7Y5SKL2_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 5.370e-8
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 1
Query:    1 DADGSLLAETLTDANGDYEFTGLAPGNYSVVEVQPDGF 114
            DA G+ +A TLTD NG+Y+FT LAPG Y V E+QP G+
Sbjct:  845 DAQGNRIASTLTDENGEYKFTNLAPGTYGVEEIQPKGY 882          
BLAST of mRNA_P-canaliculata_contig104195.574.1 vs. uniprot
Match: A0A5B9P7R1_9BACT (Serine-aspartate repeat-containing protein D n=1 Tax=Mariniblastus fucicola TaxID=980251 RepID=A0A5B9P7R1_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 5.380e-8
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1
Query:    1 DADGSLLAETLTDANGDYEFTGLAPGNYSVVEVQPDGF 114
            D  G+++  T TDA G YEF GLAPG+YSVVE+QP+G+
Sbjct:  560 DDSGNVIETTKTDATGQYEFDGLAPGSYSVVEIQPEGY 597          
BLAST of mRNA_P-canaliculata_contig104195.574.1 vs. uniprot
Match: A0A2S8G8I2_9BACT (Uncharacterized protein n=4 Tax=Pirellulaceae TaxID=2691357 RepID=A0A2S8G8I2_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 7.350e-8
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 1
Query:    1 DADGSLLAETLTDANGDYEFTGLAPGNYSVVEVQPDGF 114
            DA G+ +A T TDANG Y+F GL PGNY+VVE QP G+
Sbjct: 1111 DAGGNEIATTFTDANGHYQFDGLPPGNYTVVESQPTGY 1148          
BLAST of mRNA_P-canaliculata_contig104195.574.1 vs. uniprot
Match: A0A518JWH3_9BACT (Serine-aspartate repeat-containing protein D n=1 Tax=Rosistilla carotiformis TaxID=2528017 RepID=A0A518JWH3_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 2.570e-7
Identity = 22/38 (57.89%), Postives = 31/38 (81.58%), Query Frame = 1
Query:    1 DADGSLLAETLTDANGDYEFTGLAPGNYSVVEVQPDGF 114
            D++G+L+  T TD NG Y+FT LAPG+Y+VVE+QP G+
Sbjct:  994 DSNGTLIMTTTTDINGRYQFTDLAPGDYTVVELQPTGY 1031          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig104195.574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518IYC7_9BACT1.410e-1071.05Serine-aspartate repeat-containing protein D n=3 T... [more]
A0A2E8CVP5_9PLAN1.120e-874.29Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
UPI001E2CB3542.100e-867.57SpaA isopeptide-forming pilin-related protein n=1 ... [more]
A0A3M1MIQ2_9BACT2.100e-867.57Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A5C6CH48_9BACT2.870e-863.16Serine-aspartate repeat-containing protein D n=2 T... [more]
A0A847Y9A3_9BACT3.950e-863.16Fibrinogen-binding protein (Fragment) n=1 Tax=Ther... [more]
A0A7Y5SKL2_9BACT5.370e-860.53Carboxypeptidase regulatory-like domain-containing... [more]
A0A5B9P7R1_9BACT5.380e-860.53Serine-aspartate repeat-containing protein D n=1 T... [more]
A0A2S8G8I2_9BACT7.350e-863.16Uncharacterized protein n=4 Tax=Pirellulaceae TaxI... [more]
A0A518JWH3_9BACT2.570e-757.89Serine-aspartate repeat-containing protein D n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig104195contigP-canaliculata_contig104195:114..227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.20601-CDS-P-canaliculata_contig104195:113..2271622815612.20601-CDS-P-canaliculata_contig104195:113..227Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104195 114..227 -
1693494165.7402887-CDS-P-canaliculata_contig104195:113..2271693494165.7402887-CDS-P-canaliculata_contig104195:113..227Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104195 114..227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig104195.574.1prot_P-canaliculata_contig104195.574.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig104195 114..227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig104195.574.1

>prot_P-canaliculata_contig104195.574.1 ID=prot_P-canaliculata_contig104195.574.1|Name=mRNA_P-canaliculata_contig104195.574.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=38bp
DADGSLLAETLTDANGDYEFTGLAPGNYSVVEVQPDGF
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mRNA from alignment at P-canaliculata_contig104195:114..227-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig104195.574.1 ID=mRNA_P-canaliculata_contig104195.574.1|Name=mRNA_P-canaliculata_contig104195.574.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at P-canaliculata_contig104195:114..227- (Pelvetia canaliculata dioecious)
GATGCTGACGGAAGTTTGCTTGCCGAGACATTGACCGACGCTAATGGAGA CTACGAATTCACTGGCTTGGCTCCGGGTAATTACTCGGTTGTCGAGGTAC AACCTGACGGCTTC
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Coding sequence (CDS) from alignment at P-canaliculata_contig104195:114..227-

>mRNA_P-canaliculata_contig104195.574.1 ID=mRNA_P-canaliculata_contig104195.574.1|Name=mRNA_P-canaliculata_contig104195.574.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at P-canaliculata_contig104195:114..227- (Pelvetia canaliculata dioecious)
GATGCTGACGGAAGTTTGCTTGCCGAGACATTGACCGACGCTAATGGAGA
CTACGAATTCACTGGCTTGGCTCCGGGTAATTACTCGGTTGTCGAGGTAC
AACCTGACGGCTTCGATGCTGACGGAAGTTTGCTTGCCGAGACATTGACC
GACGCTAATGGAGACTACGAATTCACTGGCTTGGCTCCGGGTAATTACTC
GGTTGTCGAGGTACAACCTGACGGCTTC
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