mRNA_P-canaliculata_contig104174.569.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig104174.569.1
Unique NamemRNA_P-canaliculata_contig104174.569.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig104174.569.1 vs. uniprot
Match: UPI00167B7F35 (hypothetical protein n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI00167B7F35)

HSP 1 Score: 103 bits (256), Expect = 6.850e-27
Identity = 54/72 (75.00%), Postives = 65/72 (90.28%), Query Frame = 1
Query:    1 RMSWFLLFLIGVSLTVTLFFVKTHAQSAKREVRDLTREIAAQEESIQVLRAEKAYLESPARLSELNETYLKL 216
            R+SWFLLFL+GV+LTVTL+FVKTHAQSAKR+VR LTR IAA++ +I+VLRAE AYLESP RLSELN+ +L L
Sbjct:   18 RVSWFLLFLVGVALTVTLYFVKTHAQSAKRDVRVLTRAIAAEDAAIRVLRAELAYLESPTRLSELNDLHLNL 89          
BLAST of mRNA_P-canaliculata_contig104174.569.1 vs. uniprot
Match: UPI0003FDA858 (hypothetical protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI0003FDA858)

HSP 1 Score: 70.1 bits (170), Expect = 8.220e-14
Identity = 37/72 (51.39%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    1 RMSWFLLFLIGVSLTVTLFFVKTHAQSAKREVRDLTREIAAQEESIQVLRAEKAYLESPARLSELNETYLKL 216
            RM+ F+LFLIGV+LTV L++VKT +Q+A+++   L R+I+ +E ++ VL+AE AYLESP RL +L++ +L L
Sbjct:   15 RMTGFILFLIGVALTVGLYYVKTRSQTARKQSAALERQISQEEANLSVLQAEIAYLESPDRLKQLSQRHLGL 86          
BLAST of mRNA_P-canaliculata_contig104174.569.1 vs. uniprot
Match: A0A420WL53_9PROT (Uncharacterized protein n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WL53_9PROT)

HSP 1 Score: 62.0 bits (149), Expect = 9.410e-11
Identity = 35/70 (50.00%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    1 RMSWFLLFLIGVSLTVTLFFVKTHAQSAKREVRDLTREIAAQEESIQVLRAEKAYLESPARLSELNETYL 210
            R+S F+LF+IGVSLT+ LF+VKT AQ+A + V  + R I  ++ +I VL AE AY +SP RL+ L++  L
Sbjct:   13 RLSAFVLFVIGVSLTIALFYVKTRAQTAHKNVVKIERAIEKEKAAIAVLEAEIAYSQSPERLAALSKAQL 82          
BLAST of mRNA_P-canaliculata_contig104174.569.1 vs. uniprot
Match: UPI0012EA070E (hypothetical protein n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI0012EA070E)

HSP 1 Score: 57.8 bits (138), Expect = 3.420e-9
Identity = 32/72 (44.44%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 RMSWFLLFLIGVSLTVTLFFVKTHAQSAKREVRDLTREIAAQEESIQVLRAEKAYLESPARLSELNETYLKL 216
            R+ + LL LIG  L   L+  KT A+S  +++  L  ++ A+  +I+VL AE AYL++PARLS+L+ TYL+L
Sbjct:    4 RIGFALLILIGFGLVAALYITKTEAKSVGKDMERLQSDLQAEIYAIRVLEAEIAYLQNPARLSDLSRTYLEL 75          
BLAST of mRNA_P-canaliculata_contig104174.569.1 vs. uniprot
Match: A0A8J3CS62_9PROT (Uncharacterized protein n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CS62_9PROT)

HSP 1 Score: 52.8 bits (125), Expect = 3.490e-7
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    1 RMSWFLLFLIGVSLTVTLFFVKTHAQSAKREVRDLTREIAAQEESIQVLRAEKAYLESPARLSELNETYLKL 216
            R+  FLL ++G+ LT+ LFFVKT AQ A+ EV  L  +I   E +I VL AE A L +  RL +L+   L L
Sbjct:   17 RLGLFLLIVLGLGLTMMLFFVKTRAQDARDEVSRLEAQIEEHELAISVLSAEAAVLSNSERLRQLSRDRLAL 88          
BLAST of mRNA_P-canaliculata_contig104174.569.1 vs. uniprot
Match: A0A2A4YXL0_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2A4YXL0_9PROT)

HSP 1 Score: 50.4 bits (119), Expect = 5.600e-6
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 1
Query:   52 LFFVKTHAQSAKREVRDLTREIAAQEESIQVLRAEKAYLESPARLSELNETYLKL 216
            L  V  H Q A+R+++ L REIA +EESI+VL+AE AYL +P RL  L   Y+ L
Sbjct:   22 LMDVSHHVQRAERDIKHLDREIAREEESIRVLKAEWAYLNNPVRLEALAADYVDL 76          
BLAST of mRNA_P-canaliculata_contig104174.569.1 vs. uniprot
Match: A0A7V9T381_9RICK (Uncharacterized protein n=1 Tax=Rickettsiaceae bacterium TaxID=2023360 RepID=A0A7V9T381_9RICK)

HSP 1 Score: 48.9 bits (115), Expect = 1.740e-5
Identity = 24/56 (42.86%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   49 TLFFVKTHAQSAKREVRDLTREIAAQEESIQVLRAEKAYLESPARLSELNETYLKL 216
            TLF +K +  S K E+ ++  ++  + + I +L+AE AYL SPARL +LN+ Y+KL
Sbjct:   21 TLFTIKENVMSIKSELTEVNSQVQDEVDKIHLLKAELAYLTSPARLKDLNDQYIKL 76          
BLAST of mRNA_P-canaliculata_contig104174.569.1 vs. uniprot
Match: A0A2A4VCI4_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2A4VCI4_9PROT)

HSP 1 Score: 48.5 bits (114), Expect = 3.070e-5
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 1
Query:   52 LFFVKTHAQSAKREVRDLTREIAAQEESIQVLRAEKAYLESPARLSELNETYLKL 216
            L  V  H Q A+R+++ L  EIA +EESI+VL+AE AYL +P RL  L   Y+ L
Sbjct:   22 LMDVSHHVQRAERDIKRLDHEIAREEESIRVLKAEWAYLNNPVRLEALATDYIDL 76          
BLAST of mRNA_P-canaliculata_contig104174.569.1 vs. uniprot
Match: UPI0018F4555B (hypothetical protein n=1 Tax=Oleomonas cavernae TaxID=2320859 RepID=UPI0018F4555B)

HSP 1 Score: 48.1 bits (113), Expect = 9.800e-5
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 1
Query:   28 IGVSLTVTLFFVKTHAQSAKREVRDLTREIAAQEESIQVLRAEKAYLESPARLSELNETYLKL 216
            + +    TL+ VK   +  ++E R L + +A ++++IQVL AE AYL  PAR+ EL E YL L
Sbjct:   12 LAIGAAATLYQVKYEVRLLEQEARQLHQGVAREQQAIQVLSAEWAYLNQPARIQELAERYLDL 74          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig104174.569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
UPI00167B7F356.850e-2775.00hypothetical protein n=1 Tax=Litorimonas cladophor... [more]
UPI0003FDA8588.220e-1451.39hypothetical protein n=1 Tax=Hellea balneolensis T... [more]
A0A420WL53_9PROT9.410e-1150.00Uncharacterized protein n=1 Tax=Litorimonas taeane... [more]
UPI0012EA070E3.420e-944.44hypothetical protein n=1 Tax=Robiginitomaculum ant... [more]
A0A8J3CS62_9PROT3.490e-745.83Uncharacterized protein n=1 Tax=Algimonas arctica ... [more]
A0A2A4YXL0_9PROT5.600e-650.91Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A7V9T381_9RICK1.740e-542.86Uncharacterized protein n=1 Tax=Rickettsiaceae bac... [more]
A0A2A4VCI4_9PROT3.070e-549.09Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
UPI0018F4555B9.800e-541.27hypothetical protein n=1 Tax=Oleomonas cavernae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig104174contigP-canaliculata_contig104174:5..220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score66.6
Seed ortholog evalue5.2e-09
Seed eggNOG ortholog1121948.AUAC01000002_gene1449
Preferred nameMA20_01770
EggNOG free text desc.secreted (periplasmic) protein
EggNOG OGs1PVU6@1224,2V72C@28211,43YXE@69657,COG5462@1,COG5462@2
COG Functional cat.S
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size216
Cds size213
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.8693435-CDS-P-canaliculata_contig104174:4..2171622815611.8693435-CDS-P-canaliculata_contig104174:4..217Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104174 5..217 -
1693494165.5835428-CDS-P-canaliculata_contig104174:4..2171693494165.5835428-CDS-P-canaliculata_contig104174:4..217Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104174 5..217 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.8818371-UTR-P-canaliculata_contig104174:217..2201622815611.8818371-UTR-P-canaliculata_contig104174:217..220Pelvetia canaliculata dioeciousUTRP-canaliculata_contig104174 218..220 -
1693494165.5978858-UTR-P-canaliculata_contig104174:217..2201693494165.5978858-UTR-P-canaliculata_contig104174:217..220Pelvetia canaliculata dioeciousUTRP-canaliculata_contig104174 218..220 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig104174.569.1prot_P-canaliculata_contig104174.569.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig104174 5..217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig104174.569.1

>prot_P-canaliculata_contig104174.569.1 ID=prot_P-canaliculata_contig104174.569.1|Name=mRNA_P-canaliculata_contig104174.569.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=71bp
MSWFLLFLIGVSLTVTLFFVKTHAQSAKREVRDLTREIAAQEESIQVLRA
EKAYLESPARLSELNETYLKL
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mRNA from alignment at P-canaliculata_contig104174:5..220-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig104174.569.1 ID=mRNA_P-canaliculata_contig104174.569.1|Name=mRNA_P-canaliculata_contig104174.569.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at P-canaliculata_contig104174:5..220- (Pelvetia canaliculata dioecious)
CGCATGTCGTGGTTCCTGCTGTTCCTTATCGGCGTGTCCCTGACGGTGAC CCTCTTTTTCGTCAAGACCCACGCGCAATCCGCGAAGCGGGAAGTGCGAG ACCTCACGCGCGAAATCGCGGCGCAAGAGGAGTCTATTCAAGTGCTTCGC GCGGAGAAAGCCTATCTCGAGAGCCCGGCGAGATTGTCCGAACTCAATGA AACCTATCTGAAACTG
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Coding sequence (CDS) from alignment at P-canaliculata_contig104174:5..220-

>mRNA_P-canaliculata_contig104174.569.1 ID=mRNA_P-canaliculata_contig104174.569.1|Name=mRNA_P-canaliculata_contig104174.569.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at P-canaliculata_contig104174:5..220- (Pelvetia canaliculata dioecious)
ATGTCGTGGTTCCTGCTGTTCCTTATCGGCGTGTCCCTGACGGTGACCCT
CTTTTTCGTCAAGACCCACGCGCAATCCGCGAAGCGGGAAGTGCGAGACC
TCACGCGCGAAATCGCGGCGCAAGAGGAGTCTATTCAAGTGCTTCGCGCG
GAGAAAGCCTATCTCGAGAGCCCGGCGAGATTGTCCGAACTCAATGAAAC
CTATCTGAAACTGATGTCGTGGTTCCTGCTGTTCCTTATCGGCGTGTCCC
TGACGGTGACCCTCTTTTTCGTCAAGACCCACGCGCAATCCGCGAAGCGG
GAAGTGCGAGACCTCACGCGCGAAATCGCGGCGCAAGAGGAGTCTATTCA
AGTGCTTCGCGCGGAGAAAGCCTATCTCGAGAGCCCGGCGAGATTGTCCG
AACTCAATGAAACCTATCTGAAACTG
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