mRNA_P-canaliculata_contig104174.569.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig104174.569.1 vs. uniprot
Match: UPI00167B7F35 (hypothetical protein n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI00167B7F35) HSP 1 Score: 103 bits (256), Expect = 6.850e-27 Identity = 54/72 (75.00%), Postives = 65/72 (90.28%), Query Frame = 1
Query: 1 RMSWFLLFLIGVSLTVTLFFVKTHAQSAKREVRDLTREIAAQEESIQVLRAEKAYLESPARLSELNETYLKL 216
R+SWFLLFL+GV+LTVTL+FVKTHAQSAKR+VR LTR IAA++ +I+VLRAE AYLESP RLSELN+ +L L
Sbjct: 18 RVSWFLLFLVGVALTVTLYFVKTHAQSAKRDVRVLTRAIAAEDAAIRVLRAELAYLESPTRLSELNDLHLNL 89
BLAST of mRNA_P-canaliculata_contig104174.569.1 vs. uniprot
Match: UPI0003FDA858 (hypothetical protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI0003FDA858) HSP 1 Score: 70.1 bits (170), Expect = 8.220e-14 Identity = 37/72 (51.39%), Postives = 57/72 (79.17%), Query Frame = 1
Query: 1 RMSWFLLFLIGVSLTVTLFFVKTHAQSAKREVRDLTREIAAQEESIQVLRAEKAYLESPARLSELNETYLKL 216
RM+ F+LFLIGV+LTV L++VKT +Q+A+++ L R+I+ +E ++ VL+AE AYLESP RL +L++ +L L
Sbjct: 15 RMTGFILFLIGVALTVGLYYVKTRSQTARKQSAALERQISQEEANLSVLQAEIAYLESPDRLKQLSQRHLGL 86
BLAST of mRNA_P-canaliculata_contig104174.569.1 vs. uniprot
Match: A0A420WL53_9PROT (Uncharacterized protein n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WL53_9PROT) HSP 1 Score: 62.0 bits (149), Expect = 9.410e-11 Identity = 35/70 (50.00%), Postives = 50/70 (71.43%), Query Frame = 1
Query: 1 RMSWFLLFLIGVSLTVTLFFVKTHAQSAKREVRDLTREIAAQEESIQVLRAEKAYLESPARLSELNETYL 210
R+S F+LF+IGVSLT+ LF+VKT AQ+A + V + R I ++ +I VL AE AY +SP RL+ L++ L
Sbjct: 13 RLSAFVLFVIGVSLTIALFYVKTRAQTAHKNVVKIERAIEKEKAAIAVLEAEIAYSQSPERLAALSKAQL 82
BLAST of mRNA_P-canaliculata_contig104174.569.1 vs. uniprot
Match: UPI0012EA070E (hypothetical protein n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI0012EA070E) HSP 1 Score: 57.8 bits (138), Expect = 3.420e-9 Identity = 32/72 (44.44%), Postives = 49/72 (68.06%), Query Frame = 1
Query: 1 RMSWFLLFLIGVSLTVTLFFVKTHAQSAKREVRDLTREIAAQEESIQVLRAEKAYLESPARLSELNETYLKL 216
R+ + LL LIG L L+ KT A+S +++ L ++ A+ +I+VL AE AYL++PARLS+L+ TYL+L
Sbjct: 4 RIGFALLILIGFGLVAALYITKTEAKSVGKDMERLQSDLQAEIYAIRVLEAEIAYLQNPARLSDLSRTYLEL 75
BLAST of mRNA_P-canaliculata_contig104174.569.1 vs. uniprot
Match: A0A8J3CS62_9PROT (Uncharacterized protein n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CS62_9PROT) HSP 1 Score: 52.8 bits (125), Expect = 3.490e-7 Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 1
Query: 1 RMSWFLLFLIGVSLTVTLFFVKTHAQSAKREVRDLTREIAAQEESIQVLRAEKAYLESPARLSELNETYLKL 216
R+ FLL ++G+ LT+ LFFVKT AQ A+ EV L +I E +I VL AE A L + RL +L+ L L
Sbjct: 17 RLGLFLLIVLGLGLTMMLFFVKTRAQDARDEVSRLEAQIEEHELAISVLSAEAAVLSNSERLRQLSRDRLAL 88
BLAST of mRNA_P-canaliculata_contig104174.569.1 vs. uniprot
Match: A0A2A4YXL0_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2A4YXL0_9PROT) HSP 1 Score: 50.4 bits (119), Expect = 5.600e-6 Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 1
Query: 52 LFFVKTHAQSAKREVRDLTREIAAQEESIQVLRAEKAYLESPARLSELNETYLKL 216
L V H Q A+R+++ L REIA +EESI+VL+AE AYL +P RL L Y+ L
Sbjct: 22 LMDVSHHVQRAERDIKHLDREIAREEESIRVLKAEWAYLNNPVRLEALAADYVDL 76
BLAST of mRNA_P-canaliculata_contig104174.569.1 vs. uniprot
Match: A0A7V9T381_9RICK (Uncharacterized protein n=1 Tax=Rickettsiaceae bacterium TaxID=2023360 RepID=A0A7V9T381_9RICK) HSP 1 Score: 48.9 bits (115), Expect = 1.740e-5 Identity = 24/56 (42.86%), Postives = 38/56 (67.86%), Query Frame = 1
Query: 49 TLFFVKTHAQSAKREVRDLTREIAAQEESIQVLRAEKAYLESPARLSELNETYLKL 216
TLF +K + S K E+ ++ ++ + + I +L+AE AYL SPARL +LN+ Y+KL
Sbjct: 21 TLFTIKENVMSIKSELTEVNSQVQDEVDKIHLLKAELAYLTSPARLKDLNDQYIKL 76
BLAST of mRNA_P-canaliculata_contig104174.569.1 vs. uniprot
Match: A0A2A4VCI4_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2A4VCI4_9PROT) HSP 1 Score: 48.5 bits (114), Expect = 3.070e-5 Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 1
Query: 52 LFFVKTHAQSAKREVRDLTREIAAQEESIQVLRAEKAYLESPARLSELNETYLKL 216
L V H Q A+R+++ L EIA +EESI+VL+AE AYL +P RL L Y+ L
Sbjct: 22 LMDVSHHVQRAERDIKRLDHEIAREEESIRVLKAEWAYLNNPVRLEALATDYIDL 76
BLAST of mRNA_P-canaliculata_contig104174.569.1 vs. uniprot
Match: UPI0018F4555B (hypothetical protein n=1 Tax=Oleomonas cavernae TaxID=2320859 RepID=UPI0018F4555B) HSP 1 Score: 48.1 bits (113), Expect = 9.800e-5 Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 1
Query: 28 IGVSLTVTLFFVKTHAQSAKREVRDLTREIAAQEESIQVLRAEKAYLESPARLSELNETYLKL 216
+ + TL+ VK + ++E R L + +A ++++IQVL AE AYL PAR+ EL E YL L
Sbjct: 12 LAIGAAATLYQVKYEVRLLEQEARQLHQGVAREQQAIQVLSAEWAYLNQPARIQELAERYLDL 74 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig104174.569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig104174.569.1 >prot_P-canaliculata_contig104174.569.1 ID=prot_P-canaliculata_contig104174.569.1|Name=mRNA_P-canaliculata_contig104174.569.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=71bp MSWFLLFLIGVSLTVTLFFVKTHAQSAKREVRDLTREIAAQEESIQVLRAback to top mRNA from alignment at P-canaliculata_contig104174:5..220- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig104174.569.1 ID=mRNA_P-canaliculata_contig104174.569.1|Name=mRNA_P-canaliculata_contig104174.569.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at P-canaliculata_contig104174:5..220- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig104174:5..220- >mRNA_P-canaliculata_contig104174.569.1 ID=mRNA_P-canaliculata_contig104174.569.1|Name=mRNA_P-canaliculata_contig104174.569.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at P-canaliculata_contig104174:5..220- (Pelvetia canaliculata dioecious)back to top |