mRNA_P-canaliculata_contig103339.475.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103339.475.1
Unique NamemRNA_P-canaliculata_contig103339.475.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig103339.475.1 vs. uniprot
Match: D8LGL4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGL4_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 2.380e-22
Identity = 53/98 (54.08%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    1 KEVSLNSVESTLWSLEDNTETEDEIMEGDPLDLGEIAAQAVTLCIDPFAKRP-----GTAGSAGHQQSD---------EGEEEVIDVAAMNAFFGNDE 252
            +EVSL+SV+STLW+LE++TET+DEIMEGDPLDLGE+AAQ + LCIDP+AK P       AGS   + +          EGE+ V+DV  M AFF  D+
Sbjct:  222 QEVSLDSVQSTLWALEEDTETDDEIMEGDPLDLGEVAAQGLALCIDPYAKHPDFVASSDAGSGNGEGATVPGRFGMPAEGEDVVLDVDTMKAFFDADD 319
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103339.475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGL4_ECTSI2.380e-2254.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103339contigP-canaliculata_contig103339:102..356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF177
Ec32 orthologEc-10_002650.1
Exons1
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.8125935-CDS-P-canaliculata_contig103339:101..3561622815604.8125935-CDS-P-canaliculata_contig103339:101..356Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103339 102..356 +
1693494161.786173-CDS-P-canaliculata_contig103339:101..3561693494161.786173-CDS-P-canaliculata_contig103339:101..356Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103339 102..356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103339.475.1prot_P-canaliculata_contig103339.475.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103339 102..356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103339.475.1

>prot_P-canaliculata_contig103339.475.1 ID=prot_P-canaliculata_contig103339.475.1|Name=mRNA_P-canaliculata_contig103339.475.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=85bp
KEVSLNSVESTLWSLEDNTETEDEIMEGDPLDLGEIAAQAVTLCIDPFAK
RPGTAGSAGHQQSDEGEEEVIDVAAMNAFFGNDE*
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mRNA from alignment at P-canaliculata_contig103339:102..356+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103339.475.1 ID=mRNA_P-canaliculata_contig103339.475.1|Name=mRNA_P-canaliculata_contig103339.475.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=255bp|location=Sequence derived from alignment at P-canaliculata_contig103339:102..356+ (Pelvetia canaliculata dioecious)
AAGGAGGTCAGCCTAAACAGCGTGGAGTCGACCCTGTGGTCACTCGAGGA
TAACACCGAGACGGAGGACGAGATAATGGAAGGGGACCCGCTGGACCTGG
GGGAGATCGCTGCTCAGGCCGTAACGCTCTGCATTGACCCGTTCGCGAAG
CGACCGGGGACTGCCGGTAGCGCCGGCCATCAGCAGTCGGATGAAGGGGA
GGAAGAAGTTATAGACGTGGCGGCGATGAACGCTTTCTTTGGAAACGACG
AATAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig103339:102..356+

>mRNA_P-canaliculata_contig103339.475.1 ID=mRNA_P-canaliculata_contig103339.475.1|Name=mRNA_P-canaliculata_contig103339.475.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at P-canaliculata_contig103339:102..356+ (Pelvetia canaliculata dioecious)
AAGGAGGTCAGCCTAAACAGCGTGGAGTCGACCCTGTGGTCACTCGAGGA
TAACACCGAGACGGAGGACGAGATAATGGAAGGGGACCCGCTGGACCTGG
GGGAGATCGCTGCTCAGGCCGTAACGCTCTGCATTGACCCGTTCGCGAAG
CGACCGGGGACTGCCGGTAGCGCCGGCCATCAGCAGTCGGATGAAGGGGA
GGAAGAAGTTATAGACGTGGCGGCGATGAACGCTTTCTTTGGAAACGACG
AATAAAAGGAGGTCAGCCTAAACAGCGTGGAGTCGACCCTGTGGTCACTC
GAGGATAACACCGAGACGGAGGACGAGATAATGGAAGGGGACCCGCTGGA
CCTGGGGGAGATCGCTGCTCAGGCCGTAACGCTCTGCATTGACCCGTTCG
CGAAGCGACCGGGGACTGCCGGTAGCGCCGGCCATCAGCAGTCGGATGAA
GGGGAGGAAGAAGTTATAGACGTGGCGGCGATGAACGCTTTCTTTGGAAA
CGACGAATAA
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