mRNA_P-canaliculata_contig103324.471.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103324.471.1
Unique NamemRNA_P-canaliculata_contig103324.471.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103324.471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103324contigP-canaliculata_contig103324:98..367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size270
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.620428-CDS-P-canaliculata_contig103324:97..3671622815604.620428-CDS-P-canaliculata_contig103324:97..367Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103324 98..367 -
1693494161.7293787-CDS-P-canaliculata_contig103324:97..3671693494161.7293787-CDS-P-canaliculata_contig103324:97..367Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103324 98..367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103324.471.1prot_P-canaliculata_contig103324.471.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103324 98..367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103324.471.1

>prot_P-canaliculata_contig103324.471.1 ID=prot_P-canaliculata_contig103324.471.1|Name=mRNA_P-canaliculata_contig103324.471.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=90bp
MSLISNPIIYPITPITQGSTWIGTAPNGKTVQYSDEGMKRFIEENSDFTF
VNNATRTGQIIAINVDGFPETDRPEVNNGGFALAVITSYP
back to top

mRNA from alignment at P-canaliculata_contig103324:98..367-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103324.471.1 ID=mRNA_P-canaliculata_contig103324.471.1|Name=mRNA_P-canaliculata_contig103324.471.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=270bp|location=Sequence derived from alignment at P-canaliculata_contig103324:98..367- (Pelvetia canaliculata dioecious)
ATGTCCTTGATAAGCAATCCAATAATATATCCAATTACCCCAATAACACA
AGGGTCTACGTGGATTGGTACAGCCCCTAACGGAAAAACCGTACAATATT
CAGATGAGGGGATGAAACGCTTTATTGAAGAAAATTCTGACTTTACGTTT
GTAAACAATGCAACAAGAACGGGTCAGATTATTGCTATAAATGTAGATGG
TTTCCCAGAAACAGATAGGCCGGAAGTGAATAACGGAGGTTTCGCATTAG
CGGTAATAACCTCTTATCCG
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig103324:98..367-

>mRNA_P-canaliculata_contig103324.471.1 ID=mRNA_P-canaliculata_contig103324.471.1|Name=mRNA_P-canaliculata_contig103324.471.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at P-canaliculata_contig103324:98..367- (Pelvetia canaliculata dioecious)
ATGTCCTTGATAAGCAATCCAATAATATATCCAATTACCCCAATAACACA
AGGGTCTACGTGGATTGGTACAGCCCCTAACGGAAAAACCGTACAATATT
CAGATGAGGGGATGAAACGCTTTATTGAAGAAAATTCTGACTTTACGTTT
GTAAACAATGCAACAAGAACGGGTCAGATTATTGCTATAAATGTAGATGG
TTTCCCAGAAACAGATAGGCCGGAAGTGAATAACGGAGGTTTCGCATTAG
CGGTAATAACCTCTTATCCGATGTCCTTGATAAGCAATCCAATAATATAT
CCAATTACCCCAATAACACAAGGGTCTACGTGGATTGGTACAGCCCCTAA
CGGAAAAACCGTACAATATTCAGATGAGGGGATGAAACGCTTTATTGAAG
AAAATTCTGACTTTACGTTTGTAAACAATGCAACAAGAACGGGTCAGATT
ATTGCTATAAATGTAGATGGTTTCCCAGAAACAGATAGGCCGGAAGTGAA
TAACGGAGGTTTCGCATTAGCGGTAATAACCTCTTATCCG
back to top