mRNA_P-canaliculata_contig103117.459.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103117.459.1
Unique NamemRNA_P-canaliculata_contig103117.459.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig103117.459.1 vs. uniprot
Match: I0IEF1_PHYMF (Uncharacterized protein n=2 Tax=Phycisphaera TaxID=666508 RepID=I0IEF1_PHYMF)

HSP 1 Score: 230 bits (586), Expect = 1.410e-67
Identity = 161/336 (47.92%), Postives = 203/336 (60.42%), Query Frame = 2 
Query:    5 TGRDQLAELRALNDLLADESISRDEYKRRRAEVMAGGSATGSAARAATSRSVGGASVQAIKVKRGFRVPKPIKALVVLAVLGGAGYGIYVLGIAPLLEALPVAE-VDEAPEVVEAPRDVVDAAAETGEAEAGNEAVETGPPAVMMVTPGVPVQPWVPP-------VAAAAEQADAPGAAPLSERGGGIAGIADARQRELMAAAGGDPGAASGPESGS-EPDTLPAVDGAGPSGDVDPNTEADAGVPGVVAFWPVMFPEVRSGFALARQSAKVMRMERTDGDADFGIVLGPAVPEGADDPALQRFNFELRRALI---NSVGSLADRTLDTDDRPRRY 976
            +GRDQ+AELR LNDL A+ SIS+DEYK+RRAEVM GGSAT SAARAATSR+VGG   ++++VK+GF +P P+KA  VLAV+GG  YG+++LGIAPLLE   V E  DE P VV A   V D   E  E E    A   GPP ++MVTPGVPVQPW P        +AAA EQ +  G  P    G     IA+++Q    AAA  +P     P   + EP + P     GP         A  G  G VAFWPVM+PEVRS   LA +SAK +RM    G AD G+++GPA+PEG +  A + F + L+R L+   N  G  AD  +   +R +RY
Sbjct:  174 SGRDQMAELRTLNDLRAEGSISKDEYKKRRAEVMTGGSATASAARAATSRAVGGVRTESLQVKKGFSLPWPVKAAAVLAVVGGVFYGVWILGIAPLLEEPRVVEEADERPAVVAATPAVEDDTPEAVEPEPELAAEPEGPPEILMVTPGVPVQPWAPAGAEPTTRLAAAFEQVEPAGDDPAGPAGQIAQRIAESQQ---AAAAAQNPAPIPDPSQPTPEPGSTP-----GP---------AVPGEAGGVAFWPVMYPEVRSRNPLATRSAKTLRMTDQRGQADIGVIVGPAIPEGVEGEAFRGFQWSLQRELVDGLNREGVYADSIISPGERMQRY 492
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103117.459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
I0IEF1_PHYMF1.410e-6747.92Uncharacterized protein n=2 Tax=Phycisphaera TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103117contigP-canaliculata_contig103117:5..983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size981
Cds size978
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.6411312-CDS-P-canaliculata_contig103117:4..9821622815603.6411312-CDS-P-canaliculata_contig103117:4..982Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103117 5..982 +
1693494161.209719-CDS-P-canaliculata_contig103117:4..9821693494161.209719-CDS-P-canaliculata_contig103117:4..982Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103117 5..982 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103117.459.1prot_P-canaliculata_contig103117.459.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103117 5..982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103117.459.1

>prot_P-canaliculata_contig103117.459.1 ID=prot_P-canaliculata_contig103117.459.1|Name=mRNA_P-canaliculata_contig103117.459.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=326bp
GHRPGPAGGAAGTQRPAGGRIDQPRRVQAAAGRGDGGWLGHRVRRAGSDQ
PIGRRGERPGDQGEARLPRPQTHQGAGGACGARRGRLRDLRARHRAPPGG
FAGGGGGRGAGGGGGAAGRGGCRCGDRRSGGRKRSGGDRPAGGDDGHTRG
AGAALGAAGGGRCGAGRRPGGGTAERTGGRDRGHRGRPAAGADGRGGRRP
RRGVGTGVGVGAGHAARRGRRWTVRRRRSEHGGRRGRARCGGVLAGDVPG
GPQRLCARTTEREGHADGTHRRRRRLRDRARAGRARGGRRPGSAAIQLRA
PPGTHQLGGQSGGPHAGHRRPTEAVR
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mRNA from alignment at P-canaliculata_contig103117:5..983+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103117.459.1 ID=mRNA_P-canaliculata_contig103117.459.1|Name=mRNA_P-canaliculata_contig103117.459.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=979bp|location=Sequence derived from alignment at P-canaliculata_contig103117:5..983+ (Pelvetia canaliculata dioecious)
GGCCACCGGCCGGGACCAGCTGGCGGAGCTGCGGGCACTCAACGACCTGC
TGGCGGACGAATCGATCAGCCGCGACGAGTACAAGCGGCGGCGGGCCGAG
GTGATGGCGGGTGGCTCGGCCACCGGGTCCGCCGCGCGGGCAGCGACCAG
CCGATCGGTCGGCGGGGCGAGCGTCCAGGCGATCAAGGTGAAGCGCGGCT
TCCGCGTCCCCAAACCCATCAAGGCGCTGGTGGTGCTTGCGGTGCTCGGC
GGGGCCGGCTACGGGATTTACGTGCTCGGCATCGCGCCCCTCCTGGAGGC
TTTGCCGGTGGCGGAGGTGGACGAGGCGCCGGAGGTGGTGGAGGCGCCGC
GGGACGTGGTGGATGCCGCTGCGGAGACCGGCGAAGCGGAGGCAGGAAAC
GAAGCGGTGGAGACCGGCCCGCCGGCGGTGATGATGGTCACACCCGGGGT
GCCGGTGCAGCCCTGGGTGCCGCCGGTGGCGGCCGCTGCGGAGCAGGCAG
ACGCCCCGGGGGCGGCACCGCTGAGCGAACGGGGGGGCGGGATCGCGGGC
ATCGCGGACGCCCGGCAGCGGGAGCTGATGGCCGCGGCGGGCGGCGACCC
CGGCGCGGCGTCGGGACCGGAGTCGGGGTCGGAGCCGGACACGCTGCCCG
CCGTGGACGGCGCTGGACCGTCCGGCGACGTCGATCCGAACACGGAGGCA
GACGCGGGCGTGCCCGGTGTGGTGGCGTTCTGGCCGGTGATGTTCCCGGA
GGTCCGCAGCGGCTTTGCGCTCGCACGACAGAGCGCGAAGGTCATGCGGA
TGGAACGCACCGACGGCGACGCCGACTTCGGGATCGTGCTCGGGCCGGCC
GTGCCCGAGGGGGCCGACGACCCGGCTCTGCAGCGATTCAACTTCGAGCT
CCGCCGGGCACTCATCAACTCGGTGGGCAGTCTGGCGGACCGCACGCTGG
ACACCGACGACCGACCGAGGCGGTACGGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig103117:5..983+

>mRNA_P-canaliculata_contig103117.459.1 ID=mRNA_P-canaliculata_contig103117.459.1|Name=mRNA_P-canaliculata_contig103117.459.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1956bp|location=Sequence derived from alignment at P-canaliculata_contig103117:5..983+ (Pelvetia canaliculata dioecious)
GGCCACCGGCCGGGACCAGCTGGCGGAGCTGCGGGCACTCAACGACCTGC
TGGCGGACGAATCGATCAGCCGCGACGAGTACAAGCGGCGGCGGGCCGAG
GTGATGGCGGGTGGCTCGGCCACCGGGTCCGCCGCGCGGGCAGCGACCAG
CCGATCGGTCGGCGGGGCGAGCGTCCAGGCGATCAAGGTGAAGCGCGGCT
TCCGCGTCCCCAAACCCATCAAGGCGCTGGTGGTGCTTGCGGTGCTCGGC
GGGGCCGGCTACGGGATTTACGTGCTCGGCATCGCGCCCCTCCTGGAGGC
TTTGCCGGTGGCGGAGGTGGACGAGGCGCCGGAGGTGGTGGAGGCGCCGC
GGGACGTGGTGGATGCCGCTGCGGAGACCGGCGAAGCGGAGGCAGGAAAC
GAAGCGGTGGAGACCGGCCCGCCGGCGGTGATGATGGTCACACCCGGGGT
GCCGGTGCAGCCCTGGGTGCCGCCGGTGGCGGCCGCTGCGGAGCAGGCAG
ACGCCCCGGGGGCGGCACCGCTGAGCGAACGGGGGGGCGGGATCGCGGGC
ATCGCGGACGCCCGGCAGCGGGAGCTGATGGCCGCGGCGGGCGGCGACCC
CGGCGCGGCGTCGGGACCGGAGTCGGGGTCGGAGCCGGACACGCTGCCCG
CCGTGGACGGCGCTGGACCGTCCGGCGACGTCGATCCGAACACGGAGGCA
GACGCGGGCGTGCCCGGTGTGGTGGCGTTCTGGCCGGTGATGTTCCCGGA
GGTCCGCAGCGGCTTTGCGCTCGCACGACAGAGCGCGAAGGTCATGCGGA
TGGAACGCACCGACGGCGACGCCGACTTCGGGATCGTGCTCGGGCCGGCC
GTGCCCGAGGGGGCCGACGACCCGGCTCTGCAGCGATTCAACTTCGAGCT
CCGCCGGGCACTCATCAACTCGGTGGGCAGTCTGGCGGACCGCACGCTGG
ACACCGACGACCGACCGAGGCGGTACGGGGCCACCGGCCGGGACCAGCTG
GCGGAGCTGCGGGCACTCAACGACCTGCTGGCGGACGAATCGATCAGCCG
CGACGAGTACAAGCGGCGGCGGGCCGAGGTGATGGCGGGTGGCTCGGCCA
CCGGGTCCGCCGCGCGGGCAGCGACCAGCCGATCGGTCGGCGGGGCGAGC
GTCCAGGCGATCAAGGTGAAGCGCGGCTTCCGCGTCCCCAAACCCATCAA
GGCGCTGGTGGTGCTTGCGGTGCTCGGCGGGGCCGGCTACGGGATTTACG
TGCTCGGCATCGCGCCCCTCCTGGAGGCTTTGCCGGTGGCGGAGGTGGAC
GAGGCGCCGGAGGTGGTGGAGGCGCCGCGGGACGTGGTGGATGCCGCTGC
GGAGACCGGCGAAGCGGAGGCAGGAAACGAAGCGGTGGAGACCGGCCCGC
CGGCGGTGATGATGGTCACACCCGGGGTGCCGGTGCAGCCCTGGGTGCCG
CCGGTGGCGGCCGCTGCGGAGCAGGCAGACGCCCCGGGGGCGGCACCGCT
GAGCGAACGGGGGGGCGGGATCGCGGGCATCGCGGACGCCCGGCAGCGGG
AGCTGATGGCCGCGGCGGGCGGCGACCCCGGCGCGGCGTCGGGACCGGAG
TCGGGGTCGGAGCCGGACACGCTGCCCGCCGTGGACGGCGCTGGACCGTC
CGGCGACGTCGATCCGAACACGGAGGCAGACGCGGGCGTGCCCGGTGTGG
TGGCGTTCTGGCCGGTGATGTTCCCGGAGGTCCGCAGCGGCTTTGCGCTC
GCACGACAGAGCGCGAAGGTCATGCGGATGGAACGCACCGACGGCGACGC
CGACTTCGGGATCGTGCTCGGGCCGGCCGTGCCCGAGGGGGCCGACGACC
CGGCTCTGCAGCGATTCAACTTCGAGCTCCGCCGGGCACTCATCAACTCG
GTGGGCAGTCTGGCGGACCGCACGCTGGACACCGACGACCGACCGAGGCG
GTACGG
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