mRNA_P-canaliculata_contig1031.457.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig1031.457.1
Unique NamemRNA_P-canaliculata_contig1031.457.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig1031.457.1 vs. uniprot
Match: A0A2I6RJN1_SACJA (GDP-L-fucose synthase n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A2I6RJN1_SACJA)

HSP 1 Score: 503 bits (1295), Expect = 6.140e-174
Identity = 238/253 (94.07%), Postives = 243/253 (96.05%), Query Frame = 1 
Query:    1 QVGGLFSNLKYKVEFFRENILINDNVMECCRIYKVEKLVSCLSTCIFPDKTTYPIDETMVHNGPPHTSNEGYAYAKRMIDVLNRCYKDEYGCNFTSVIPTNIYGKGDNFSIDNGHVLPGLIHKCYKAKQAGEDLHVWGTGSPLRQFIYNVDLGALMASGIWAMRNYHETDPIILSVGEEDEVSIADAAKMIATAMDFEGNVVFDTDKSDGQFKKTACNDLLKKLNPGFKFTPMPEGLKAACDWFCENYETARK 759
            +VGGLFSNLKYKVEFFRENILINDNVMECCRIYKVEKLVSCLSTCIFPDKTTYPIDETMVHNGPPH SNEGYAYAKRMIDVLNRCYK+EYGCNFTSVIPTNIYGKGDNFSIDNGHVLPGLIHKCYKAKQAGEDLHVWGTGSPLRQFIYNVDLGALM   IW MRNYHE DPIILSVGEEDEVSIADAAKMIA+AMDFEGNVVFDTDKSDGQFKKTACNDLLK+ NP FKFTPM EGLK AC+WFCENYETARK
Sbjct:   78 RVGGLFSNLKYKVEFFRENILINDNVMECCRIYKVEKLVSCLSTCIFPDKTTYPIDETMVHNGPPHVSNEGYAYAKRMIDVLNRCYKEEYGCNFTSVIPTNIYGKGDNFSIDNGHVLPGLIHKCYKAKQAGEDLHVWGTGSPLRQFIYNVDLGALM---IWTMRNYHEVDPIILSVGEEDEVSIADAAKMIASAMDFEGNVVFDTDKSDGQFKKTACNDLLKQKNPDFKFTPMKEGLKQACEWFCENYETARK 327
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BLAST of mRNA_P-canaliculata_contig1031.457.1 vs. uniprot
Match: A0A6H5JCJ7_9PHAE (GFS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ7_9PHAE)

HSP 1 Score: 410 bits (1055), Expect = 2.610e-139
Identity = 199/208 (95.67%), Postives = 201/208 (96.63%), Query Frame = 1 
Query:    4 VGGLFSNLKYKVEFFRENILINDNVMECCRIYKVEKLVSCLSTCIFPDKTTYPIDETMVHNGPPHTSNEGYAYAKRMIDVLNRCYK--DEYGCNFTSVIPTNIYGKGDNFSIDNGHVLPGLIHKCYKAKQAGEDLHVWGTGSPLRQFIYNVDLGALMASGIWAMRNYHETDPIILSVGEEDEVSIADAAKMIATAMDFEGNVVFDTDK 621
            VGGLFSNLKYKVEFFRENILINDNVMECCRIYKVEKLVSCLSTCIFPDKTTYPIDETMVHNGPPHTSNEGYAYAKRMIDVLNRCYK  DEYGCNFTSVIPTNIYGKGDNFSIDNGHVLPGLIHKCYKAKQAGEDLHVWGTGSPLRQFIYNVDLGALM   IW MRNYHE DPIILSVGEEDEVSIADAAKMIA+AM+FEGNVVFDTDK
Sbjct:   10 VGGLFSNLKYKVEFFRENILINDNVMECCRIYKVEKLVSCLSTCIFPDKTTYPIDETMVHNGPPHTSNEGYAYAKRMIDVLNRCYKVPDEYGCNFTSVIPTNIYGKGDNFSIDNGHVLPGLIHKCYKAKQAGEDLHVWGTGSPLRQFIYNVDLGALM---IWTMRNYHEVDPIILSVGEEDEVSIADAAKMIASAMNFEGNVVFDTDK 214
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BLAST of mRNA_P-canaliculata_contig1031.457.1 vs. uniprot
Match: A0A836C923_9STRA (GDP-L-fucose synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C923_9STRA)

HSP 1 Score: 407 bits (1047), Expect = 1.490e-136
Identity = 190/252 (75.40%), Postives = 214/252 (84.92%), Query Frame = 1 
Query:    1 QVGGLFSNLKYKVEFFRENILINDNVMECCRIYKVEKLVSCLSTCIFPDKTTYPIDETMVHNGPPHTSNEGYAYAKRMIDVLNRCYKDEYGCNFTSVIPTNIYGKGDNFSIDNGHVLPGLIHKCYKAKQAGEDLHVWGTGSPLRQFIYNVDLGALMASGIWAMRNYHETDPIILSVGEEDEVSIADAAKMIATAMDFEGNVVFDTDKSDGQFKKTACNDLLKKLNPGFKFTPMPEGLKAACDWFCENYETAR 756
            +VGGLF+NLKYKVEF+REN+LINDNVMECCRIYKV+KLVSCLSTC+FPDKTTYPIDETMVH GPPH+SNEGYAYAKRMIDV+NRCY+DEYGCNFTSVIPTNIYGK DNFSID GHV+PGLIHKC+ A++ G    +WG+GSPLRQFIYNVDLGALM   +W +R+Y   DPIILSVGEEDEVSIADAA+M+A  M + G VVFDT K+DGQFKKTA N  L+ L P FKFTPM +GL   C WF  N   AR
Sbjct:   63 KVGGLFNNLKYKVEFYRENMLINDNVMECCRIYKVQKLVSCLSTCVFPDKTTYPIDETMVHAGPPHSSNEGYAYAKRMIDVMNRCYRDEYGCNFTSVIPTNIYGKHDNFSIDGGHVIPGLIHKCFLAEKNGTPFTIWGSGSPLRQFIYNVDLGALM---VWVLRSYDSVDPIILSVGEEDEVSIADAARMVAKGMAYSGEVVFDTTKADGQFKKTASNARLRALRPDFKFTPMAQGLAETCAWFKANSAVAR 311
[Close]
BLAST of mRNA_P-canaliculata_contig1031.457.1 vs. uniprot
Match: A0A7S3H4T7_9STRA (GDP-L-fucose synthase n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4T7_9STRA)

HSP 1 Score: 404 bits (1038), Expect = 4.220e-135
Identity = 186/252 (73.81%), Postives = 214/252 (84.92%), Query Frame = 1 
Query:    4 VGGLFSNLKYKVEFFRENILINDNVMECCRIYKVEKLVSCLSTCIFPDKTTYPIDETMVHNGPPHTSNEGYAYAKRMIDVLNRCYKDEYGCNFTSVIPTNIYGKGDNFSIDNGHVLPGLIHKCYKAKQAGEDLHVWGTGSPLRQFIYNVDLGALMASGIWAMRNYHETDPIILSVGEEDEVSIADAAKMIATAMDFEGNVVFDTDKSDGQFKKTACNDLLKKLNPGFKFTPMPEGLKAACDWFCENYETARK 759
            VGGLF NLKYKVEF+REN+LINDNVMEC R + V KLVSCLSTCIFPDKTTYPIDETMVH+GPPH+SN GYAYAKRMIDV+N+CY +EYGCN+TS+IPTNIYG  DNF I++GHV+PGLIHKCYKAK+ G DL +WGTGSPLRQFIY+ DL  L    +W MR YH  +PIILSVGEEDEVSIAD A+ +A AM FEGN+VFDT KSDGQ+KKTA N  L++L P F+FTP+ +GL+ ACDWF  NYETARK
Sbjct:   71 VGGLFKNLKYKVEFYRENVLINDNVMECSREFNVVKLVSCLSTCIFPDKTTYPIDETMVHDGPPHSSNAGYAYAKRMIDVVNKCYNEEYGCNYTSIIPTNIYGPHDNFGIEDGHVIPGLIHKCYKAKRDGTDLTIWGTGSPLRQFIYSEDLARLT---VWVMREYHSPEPIILSVGEEDEVSIADVARAVAKAMKFEGNIVFDTTKSDGQYKKTASNKKLRELYPDFEFTPIDQGLQQACDWFVANYETARK 319
[Close]
BLAST of mRNA_P-canaliculata_contig1031.457.1 vs. uniprot
Match: A0A7S4EAF3_9STRA (GDP-L-fucose synthase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EAF3_9STRA)

HSP 1 Score: 396 bits (1018), Expect = 4.280e-132
Identity = 186/252 (73.81%), Postives = 209/252 (82.94%), Query Frame = 1 
Query:    4 VGGLFSNLKYKVEFFRENILINDNVMECCRIYKVEKLVSCLSTCIFPDKTTYPIDETMVHNGPPHTSNEGYAYAKRMIDVLNRCYKDEYGCNFTSVIPTNIYGKGDNFSIDNGHVLPGLIHKCYKAKQAGEDLHVWGTGSPLRQFIYNVDLGALMASGIWAMRNYHETDPIILSVGEEDEVSIADAAKMIATAMDFEGNVVFDTDKSDGQFKKTACNDLLKKLNPGFKFTPMPEGLKAACDWFCENYETARK 759
            VGGLF+N+  KVEF+REN+L+NDNVMECCRIYKV+KLVSCLSTCIFPDKTTYPIDETM+H+G PH SNEGYAYAKRMIDV+NRCYKDEYGCNFTSVIPTNIYG  DN+SI  GHV+PGLIHKCY AK+ G    VWGTGSPLRQFIY+ DL AL    +W +R+Y  TDPIILSV EE EV+I D A MI  AM+F+G V F TDK+DGQ+KKTA N+ L  L P F+FTPM EGLK ACDWFC NYET RK
Sbjct:   73 VGGLFANMSKKVEFYRENMLMNDNVMECCRIYKVQKLVSCLSTCIFPDKTTYPIDETMIHDGAPHLSNEGYAYAKRMIDVMNRCYKDEYGCNFTSVIPTNIYGPHDNYSIQGGHVVPGLIHKCYLAKKNGTPFEVWGTGSPLRQFIYSGDLAALT---VWVLRSYDSTDPIILSVPEEKEVTIKDVALMIRDAMEFKGEVKFLTDKADGQYKKTASNEKLAGLRPDFQFTPMAEGLKKACDWFCANYETCRK 321
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BLAST of mRNA_P-canaliculata_contig1031.457.1 vs. uniprot
Match: A0A6T7DWV8_9STRA (GDP-L-fucose synthase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7DWV8_9STRA)

HSP 1 Score: 394 bits (1011), Expect = 3.710e-130
Identity = 182/254 (71.65%), Postives = 214/254 (84.25%), Query Frame = 1 
Query:    1 QVGGLFSNLKYKVEFFRENILINDNVMECCRIYKVEKLVSCLSTCIFPDKTTYPIDETMVHNGPPHTSNEGYAYAKRMIDVLNRCYKDEYGCNFTSVIPTNIYGKGDNFSIDNGHVLPGLIHKCYKAKQAGEDLHVWGTGSPLRQFIYNVDLGALMASGIWAMRNYHETDPIILSVGEEDEVSIADAAKMIATAMDFE-GNVVFDTDKSDGQFKKTACNDLLKKLNPGFKFTPMPEGLKAACDWFCENYETARK 759
            +VGGLF+N K+KVEF+R+NI+INDNVMECCRI+ V KLVSCLSTCIFPDKTTYPIDETMVH+GPPH SNEGYAYAKRMIDVLNRCY DEYGCN TS+IPTNIYG  DNF+I+NGHV+PGLIHK + AKQ+GEDLH+WG+G+PLRQFI++ DL AL    +W +R+YH+ +PIILSVGEE+EVSI D A M+A A       VVFDTDKSDGQFKKTACN  L+KL P +KF P+ EG++ + DWF  NYE ARK
Sbjct:  130 KVGGLFANQKFKVEFYRDNIIINDNVMECCRIFGVRKLVSCLSTCIFPDKTTYPIDETMVHDGPPHKSNEGYAYAKRMIDVLNRCYSDEYGCNMTSIIPTNIYGPHDNFNIENGHVIPGLIHKAFLAKQSGEDLHIWGSGTPLRQFIFSQDLAALT---VWTLRDYHDPEPIILSVGEEEEVSIKDVALMVAEASGLPLERVVFDTDKSDGQFKKTACNKKLRKLQPSYKFKPIKEGIQESVDWFFANYEAARK 380
[Close]
BLAST of mRNA_P-canaliculata_contig1031.457.1 vs. uniprot
Match: F0YA35_AURAN (GDP-L-fucose synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YA35_AURAN)

HSP 1 Score: 390 bits (1003), Expect = 7.600e-130
Identity = 183/252 (72.62%), Postives = 210/252 (83.33%), Query Frame = 1 
Query:    4 VGGLFSNLKYKVEFFRENILINDNVMECCRIYKVEKLVSCLSTCIFPDKTTYPIDETMVHNGPPHTSNEGYAYAKRMIDVLNRCYKDEYGCNFTSVIPTNIYGKGDNFSIDNGHVLPGLIHKCYKAKQAGEDLHVWGTGSPLRQFIYNVDLGALMASGIWAMRNYHETDPIILSVGEEDEVSIADAAKMIATAMDFEGNVVFDTDKSDGQFKKTACNDLLKKLNPGFKFTPMPEGLKAACDWFCENYETARK 759
            VGGLF+N+  KVEF+REN+L+NDNVMECCRIYKVEKLVSCLSTCIFPDKT+YPIDE+MVH+G PH+SNEGYAYAKRMI+V+NRCY +EYGC FT+VIPTNIYG  DNFS++ GHV+PGLIHKCY AK+ G    VWG+G+PLRQFIY+VDL AL    +W MR+Y   D IILSVGEEDEVSI D A MI  AM FEG V+FDTDK+DGQ+KKTA ND LK L P FKFTPM EGL+ A DWF  NY+T RK
Sbjct:   72 VGGLFANMAKKVEFYRENMLMNDNVMECCRIYKVEKLVSCLSTCIFPDKTSYPIDESMVHDGAPHSSNEGYAYAKRMIEVMNRCYAEEYGCKFTAVIPTNIYGPHDNFSVNGGHVVPGLIHKCYVAKRDGTPFTVWGSGTPLRQFIYSVDLAALT---VWVMRSYDSADSIILSVGEEDEVSIKDVALMIRDAMKFEGEVIFDTDKADGQYKKTASNDKLKGLRPDFKFTPMREGLQKAVDWFVANYDTCRK 320
[Close]
BLAST of mRNA_P-canaliculata_contig1031.457.1 vs. uniprot
Match: A0A7S0PWT1_9STRA (GDP-L-fucose synthase n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PWT1_9STRA)

HSP 1 Score: 377 bits (967), Expect = 1.980e-125
Identity = 174/253 (68.77%), Postives = 203/253 (80.24%), Query Frame = 1 
Query:    1 QVGGLFSNLKYKVEFFRENILINDNVMECCRIYKVEKLVSCLSTCIFPDKTTYPIDETMVHNGPPHTSNEGYAYAKRMIDVLNRCYKDEYGCNFTSVIPTNIYGKGDNFSIDNGHVLPGLIHKCYKAKQAGEDLHVWGTGSPLRQFIYNVDLGALMASGIWAMRNYHETDPIILSVGEEDEVSIADAAKMIATAMDFEGNVVFDTDKSDGQFKKTACNDLLKKLNPGFKFTPMPEGLKAACDWFCENYETARK 759
            +VGGLF+N+  KVEFFRENILINDN+MECCRIYK++KLVS LSTCIFPDKT+YPIDETM+H+GPPH SNEGYAYAKR+ID LNR Y +EY CNFTS+IPTNIYG  DNFSI NGHV+PGLIHKCY AK+      +WG+G+PLRQFIY++DL  L    +W MR YH  DPI LSV E DEV I D A  +A AM FEG +VFDTDK+DGQFKKTA N  L+K  P +KFT + EG++ + DWF ENYETARK
Sbjct:    4 KVGGLFANMAQKVEFFRENILINDNIMECCRIYKIKKLVSFLSTCIFPDKTSYPIDETMLHDGPPHPSNEGYAYAKRLIDTLNRAYAEEYNCNFTSIIPTNIYGPHDNFSIQNGHVIPGLIHKCYLAKKNNTPFTIWGSGTPLRQFIYSLDLAELT---VWTMREYHSPDPITLSVDEADEVPIKDVALAVAKAMKFEGEIVFDTDKADGQFKKTAANGKLRKYRPDYKFTTIEEGVQKSVDWFLENYETARK 253
[Close]
BLAST of mRNA_P-canaliculata_contig1031.457.1 vs. uniprot
Match: W7TZW1_9STRA (GDP-L-fucose synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZW1_9STRA)

HSP 1 Score: 389 bits (998), Expect = 3.270e-125
Identity = 178/252 (70.63%), Postives = 209/252 (82.94%), Query Frame = 1 
Query:    4 VGGLFSNLKYKVEFFRENILINDNVMECCRIYKVEKLVSCLSTCIFPDKTTYPIDETMVHNGPPHTSNEGYAYAKRMIDVLNRCYKDEYGCNFTSVIPTNIYGKGDNFSIDNGHVLPGLIHKCYKAKQAGEDLHVWGTGSPLRQFIYNVDLGALMASGIWAMRNYHETDPIILSVGEEDEVSIADAAKMIATAMDFEGNVVFDTDKSDGQFKKTACNDLLKKLNPGFKFTPMPEGLKAACDWFCENYETARK 759
            VGGLF N+  KVEF+REN+LINDNVME C+ +KVEKLVSCLSTCIFPDKTTYPIDETM+HNGPPH SNEGYAYAKRM+DV++RCYK+EYGCNFTS+IPTNIYG  DNF+I +GHV+PGL+HKCY A+QAG D  +WG+G PLRQFIY+ DL  L+   IW MR YH  DP+ILSVGEEDEVSI   A+ +A AM+F+GNVVFDT K+DGQ+KKTA N  L+ L P F+FT + EGL+  C WF ENY TARK
Sbjct:  348 VGGLFRNMAQKVEFYRENMLINDNVMEACKDFKVEKLVSCLSTCIFPDKTTYPIDETMIHNGPPHASNEGYAYAKRMLDVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNIQDGHVIPGLVHKCYLAEQAGTDFTIWGSGKPLRQFIYSRDLAELI---IWTMREYHSADPLILSVGEEDEVSIGTLAETVAKAMEFKGNVVFDTSKADGQYKKTASNLKLRSLRPDFRFTSIEEGLEKTCAWFKENYATARK 596
[Close]
BLAST of mRNA_P-canaliculata_contig1031.457.1 vs. uniprot
Match: A0A7S1PSM9_ALECA (GDP-L-fucose synthase n=2 Tax=Alexandrium TaxID=2924 RepID=A0A7S1PSM9_ALECA)

HSP 1 Score: 379 bits (972), Expect = 3.630e-125
Identity = 174/253 (68.77%), Postives = 207/253 (81.82%), Query Frame = 1 
Query:    1 QVGGLFSNLKYKVEFFRENILINDNVMECCRIYKVEKLVSCLSTCIFPDKTTYPIDETMVHNGPPHTSNEGYAYAKRMIDVLNRCYKDEYGCNFTSVIPTNIYGKGDNFSIDNGHVLPGLIHKCYKAKQAGEDLHVWGTGSPLRQFIYNVDLGALMASGIWAMRNYHETDPIILSVGEEDEVSIADAAKMIATAMDFEGNVVFDTDKSDGQFKKTACNDLLKKLNPGFKFTPMPEGLKAACDWFCENYETARK 759
            +VGGLF N++ KV+F+REN LINDNVMECCRI+ V+KL+SCLSTCIFPDKTT+PIDETM+HNGPPH SN GYA AKRM+DVLN CYKD+YG NFTSVIPTNIYG  DNFSI++GHV+PGLIHKCY AK+   D  +WG+GSPLRQFIY+ DL  L    +WA+RNY   DPIILSVGEEDEV+I + A++I  AM+F+GN V DT K+DGQ KKTA N  L+ + P +KFTP+ EG+K A DWF  NYETARK
Sbjct:   71 KVGGLFHNMRKKVDFYRENTLINDNVMECCRIHGVKKLLSCLSTCIFPDKTTFPIDETMIHNGPPHDSNVGYAVAKRMVDVLNHCYKDQYGLNFTSVIPTNIYGPHDNFSIEDGHVIPGLIHKCYMAKRDNTDFVIWGSGSPLRQFIYSTDLAELT---VWALRNYESVDPIILSVGEEDEVTIKEVAELIVEAMEFKGNFVCDTSKADGQHKKTASNQKLRSMRPDYKFTPIREGIKQAVDWFVANYETARK 320
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig1031.457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2I6RJN1_SACJA6.140e-17494.07GDP-L-fucose synthase n=3 Tax=Phaeophyceae TaxID=2... [more]
A0A6H5JCJ7_9PHAE2.610e-13995.67GFS protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A836C923_9STRA1.490e-13675.40GDP-L-fucose synthase n=1 Tax=Tribonema minus TaxI... [more]
A0A7S3H4T7_9STRA4.220e-13573.81GDP-L-fucose synthase n=2 Tax=Spumella elongata Ta... [more]
A0A7S4EAF3_9STRA4.280e-13273.81GDP-L-fucose synthase n=2 Tax=Pelagomonas calceola... [more]
A0A6T7DWV8_9STRA3.710e-13071.65GDP-L-fucose synthase n=1 Tax=Florenciella parvula... [more]
F0YA35_AURAN7.600e-13072.62GDP-L-fucose synthase n=1 Tax=Aureococcus anophage... [more]
A0A7S0PWT1_9STRA1.980e-12568.77GDP-L-fucose synthase n=1 Tax=Asterionellopsis gla... [more]
W7TZW1_9STRA3.270e-12570.63GDP-L-fucose synthase n=2 Tax=Monodopsidaceae TaxI... [more]
A0A7S1PSM9_ALECA3.630e-12568.77GDP-L-fucose synthase n=2 Tax=Alexandrium TaxID=29... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig1031contigP-canaliculata_contig1031:24333..27540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score454.5
Seed ortholog evalue2.9e-125
Seed eggNOG ortholog2880.D7FW27
Preferred nameTSTA3
KEGG rclassRC01014
KEGG koko:K02377,ko:K12812
KEGG ReactionR05692
KEGG Pathwayko00051,ko00520,ko01100,ko03013,ko03015,ko03040,ko05164,map00051,map00520,map01100,map03013,map03015,map03040,map05164
KEGG ModuleM00406,M00430
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0006139,GO:0006403,GO:0006725,GO:0006793,GO:0006807,GO:0006810,GO:0007155,GO:0007159,GO:0008150,GO:0008152,GO:0009055,GO:0009058,GO:0009225,GO:0009226,GO:0009987,GO:0015931,GO:0016491,GO:0016614,GO:0016616,GO:0016853,GO:0016854,GO:0016857,GO:0018130,GO:0019438,GO:0019673,GO:0019835,GO:0022610,GO:0022900,GO:0033036,GO:0033227,GO:0034641,GO:0034654,GO:0042350,GO:0042351,GO:0042356,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046368,GO:0046483,GO:0047918,GO:0050577,GO:0050657,GO:0050658,GO:0051179,GO:0051234,GO:0051236,GO:0055086,GO:0055114,GO:0071702,GO:0071704,GO:0071705,GO:0098609,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.GDP-L-fucose synthase activity
EggNOG OGsCOG0451@1,KOG1431@2759
EC1.1.1.271,3.6.4.13
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGDP-4-keto-6-deoxy-D-mannose epimerase-reductase
Ec32 orthologEc-01_003130.1
Exons6
Model size1656
Cds size684
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig1031.457.1prot_P-canaliculata_contig1031.457.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig1031 25227..27462 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.4581423-UTR-P-canaliculata_contig1031:24332..252261622815603.4581423-UTR-P-canaliculata_contig1031:24332..25226Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1031 24333..25226 -
1693494161.1229365-UTR-P-canaliculata_contig1031:24332..252261693494161.1229365-UTR-P-canaliculata_contig1031:24332..25226Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1031 24333..25226 -
1622815603.5625741-UTR-P-canaliculata_contig1031:27462..275401622815603.5625741-UTR-P-canaliculata_contig1031:27462..27540Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1031 27463..27540 -
1693494161.190242-UTR-P-canaliculata_contig1031:27462..275401693494161.190242-UTR-P-canaliculata_contig1031:27462..27540Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1031 27463..27540 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.4718602-CDS-P-canaliculata_contig1031:25226..252711622815603.4718602-CDS-P-canaliculata_contig1031:25226..25271Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1031 25227..25271 -
1693494161.137375-CDS-P-canaliculata_contig1031:25226..252711693494161.137375-CDS-P-canaliculata_contig1031:25226..25271Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1031 25227..25271 -
1622815603.4851997-CDS-P-canaliculata_contig1031:25622..257181622815603.4851997-CDS-P-canaliculata_contig1031:25622..25718Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1031 25623..25718 -
1693494161.1465304-CDS-P-canaliculata_contig1031:25622..257181693494161.1465304-CDS-P-canaliculata_contig1031:25622..25718Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1031 25623..25718 -
1622815603.5020413-CDS-P-canaliculata_contig1031:26005..261491622815603.5020413-CDS-P-canaliculata_contig1031:26005..26149Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1031 26006..26149 -
1693494161.1551504-CDS-P-canaliculata_contig1031:26005..261491693494161.1551504-CDS-P-canaliculata_contig1031:26005..26149Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1031 26006..26149 -
1622815603.5182672-CDS-P-canaliculata_contig1031:26469..265591622815603.5182672-CDS-P-canaliculata_contig1031:26469..26559Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1031 26470..26559 -
1693494161.1640718-CDS-P-canaliculata_contig1031:26469..265591693494161.1640718-CDS-P-canaliculata_contig1031:26469..26559Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1031 26470..26559 -
1622815603.5339382-CDS-P-canaliculata_contig1031:26813..269391622815603.5339382-CDS-P-canaliculata_contig1031:26813..26939Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1031 26814..26939 -
1693494161.1746159-CDS-P-canaliculata_contig1031:26813..269391693494161.1746159-CDS-P-canaliculata_contig1031:26813..26939Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1031 26814..26939 -
1622815603.5486438-CDS-P-canaliculata_contig1031:27279..274621622815603.5486438-CDS-P-canaliculata_contig1031:27279..27462Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1031 27280..27462 -
1693494161.1823792-CDS-P-canaliculata_contig1031:27279..274621693494161.1823792-CDS-P-canaliculata_contig1031:27279..27462Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1031 27280..27462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig1031.457.1

>prot_P-canaliculata_contig1031.457.1 ID=prot_P-canaliculata_contig1031.457.1|Name=mRNA_P-canaliculata_contig1031.457.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=228bp
MECCRIYKVEKLVSCLSTCIFPDKTTYPIDETMVHNGPPHTSNEGYAYAK
RMIDVLNRCYKDEYGCNFTSVIPTNIYGKGDNFSIDNGHVLPGLIHKCYK
AKQAGEDLHVWGTGSPLRQFIYNVDLGALMASGIWAMRNYHETDPIILSV
GEEDEVSIADAAKMIATAMDFEGNVVFDTDKSDGQFKKTACNDLLKKLNP
GFKFTPMPEGLKAACDWFCENYETARK*
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mRNA from alignment at P-canaliculata_contig1031:24333..27540-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig1031.457.1 ID=mRNA_P-canaliculata_contig1031.457.1|Name=mRNA_P-canaliculata_contig1031.457.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3208bp|location=Sequence derived from alignment at P-canaliculata_contig1031:24333..27540- (Pelvetia canaliculata dioecious)
CAGGTGGGCGGGCTCTTCAGCAACCTCAAGTACAAGGTGGAGTTCTTCCG
CGAGAACATCCTCATCAACGATAATGTGATGGAGTGCTGCAGGATCTACA
AGGTGGAAAAGCTCGTGTCGTGCCTCTCTACGTGCATCTTCCCCGACAAG
ACCACCTACCCTATCGACGAGACCATGGTCCACAATGGCCCGCCCCACAC
CAGCAACGAGGGCTACGCGTACGCCAAGCGCATGATCGACGTGCTCAACC
GCTGCTACAAGGTGCGCGTGCGATCCTAAGACTCACAAGCGTCATATTTT
TGAAAGCTCCGCCTAGTCGCTTCTTCTGTTTTTGCCCACGCTCGGCCCGC
ACCCTAGACAAAAAAAAAATTCCCCGAGACCTCGCTCCCTCGAGGGCCCG
GAGGCCTCATGTTGGAATCTTTGTACGGGGATGGACCAACTGTTCGTGGC
CTTGGAACATTTCGGAGTGCTTACAAGTTCGACTTAGATTTTCGCTCGGC
GGCCTTGCTTCCAGTTTTTCCCTTGTATTATATAATTTGTACCTTTTTTA
CGAGCAGCTCAACGTGTACCCTGTATCTTGTTCGTTGGCTGGCCACGACA
GGACGAGTACGGTTGCAACTTCACGTCCGTGATCCCGACCAACATCTACG
GCAAGGGGGACAACTTCTCGATCGACAACGGCCACGTTCTTCCCGGACTC
ATCCACAAGTGCTACAAGGCCAAGCAGGTGAAGTGAACCACGCACCACAT
TCCCCCGCTCCGCGGCGCTAGTTCTGCAATGCAAGAGTCATCTCCAAGGA
GTCATCGAGTGCTTTCAACGCGGAGGGAACACCACCTGAAATCTTGAGCG
CTTAGCATCGTTCGTAGCGATGAAAAGGTGACTCCATAACGTCCTTTCTT
GTAGCTTTGATGTAAGGCATGTGCGCATAGAACGCTTGCGGTGTCATCGA
TGCGCGTTCGTTTGGCTTCGCCGCGCCGCAGGCGGGAGAGGACCTTCACG
TATGGGGAACGGGGAGCCCGCTCCGTCAGTTCATCTACAACGTCGACCTC
GGCGCTCTCATGGCGAGTGGAGTTGTTTCGAAAGTTCGGATGCGGTCGCA
GAAGCGGTTTGCGACGGCGTAATGAACCGTGCCGTGGGCGTTTGAAAATA
GCTTGGAAGGACCATCGTATCGTGTTTCGCCCTGGCGTGAAGCTCGGAGT
ATTTGTTACCGCATTTGTCAAGTATTTTTGAGCGGGCTTACTGCTTCAGG
TTAGCCTCTGTGCTAGATCTCTTTCTGTTGGAATGAATGCCTGTGTTACA
AATTCAAGATGTTCACCTCACAAACATCCTCCGTGCTTTTGGTGGTGCCT
GTCTGGGGAATCTCGTGTCTTTGTACCCATCGGGGTTGCAGATTTGGGCT
ATGCGCAATTACCACGAGACTGATCCGATAATCTTGTCGGTCGGAGAGGA
GGACGAGGTTTCCATTGCGGACGCGGCGAAGATGATCGCCACTGCCATGG
ACTTTGAGGGGAACGTCGTCTTCGACACGGATAAGGTGGGTGGTCGACCT
CGACAGCTGACCGGGGCGCTGCACATCAGCGGACGGCGGTAGGCATTTCG
TCTCATTTCTTTGCAACACGTGCCTTCGATGGTGCAATAAAATGAAGCTG
AAGGTGTCGAATATCGAATGAATCGTGGTTTGAGCCTCATGTGCCCAAGA
ATATCGCTACGATCAAAATAATTGAAGGAAAGCGCATTAAAGTCTTTTTT
AAACTTGGAGATTCCTGCGTTTCGACGCTGTTGCCGCTTGCGAATGATTT
GGATGCCGCTCAACGATTACAGTCGGACGGGCAGTTCAAGAAAACGGCGT
GCAACGACCTCCTCAAGAAGTTAAACCCGGGCTTCAAGTTCACCCCCATG
CCGGAGGGCCTCAAGGCGGTGAGAATTTTTTCGTTTCGTTTCGTTTCGTT
TCGTTTCCATGCAGAAACTTGACGCGCCAATAACGCTTTACGACGTTAAA
AAATAAGGAAAAAACGTACTGGTTTCAATCGGAGTTCCTCCAAGACGTAA
GACGCAACACATTTTGTACGAAGGCGGGGTTGGTAATTACGTGTGTTTGT
GTTTGCATACTTGCTTTTCTACAGAGGGCGCACGCAATACTCTTCCGGTA
GAGAAACAACATTTAGCTTAGGAACGTGGGTGTACGTCTGACACGATTCT
CCATACCTATTGCATCCACCGTACGCAAACCTCTTACGCCCTCCTCGTGG
CCTTTTTTGTTTCCAACAGGCGTGCGACTGGTTCTGCGAGAACTACGAGA
CGGCCCGCAAGTAAAGACAAAGCGCCACCTTTAGCTGGGTAAACTGGGTC
GCCGCGGTGCTATCTGCTGTCTCGAAAAGCTTCGTCCCTAAGAAGACGTC
CTCGTCTGTCGCCTTCCTTTCAGAGTTTGTTGGGTTGCTCGTTTGTTTTT
CCTATCCCTACGCAGCTTTTAGAACGGAACGCGCGTAGCGACTTCTGAGT
CTCCGGTCGTGTTATGATCAAGCTTGTTAAACTAAGAGTATCCCGGGAGC
ATTCTGATGAGCGCTACGATATGATGGTCGAATGATGCCATGCGCTAGTG
ACTTGACACGTCGGAGTTTTTGTAGGGTGAAAGAGGCCATGGCGAAGTTG
ATTGTGCGTTATCCTTGTATGTGCGCGGTAGTAACTATAGTGATTCTATA
GTCTCGCTTTTCCTTCCGGTGCGTTCACAAGCACTGCGTCTCGCTGGAAC
TGCTATAATAAGTAGTTGTCGATTCTGTTAGTTGTTCATCCGGCCGACAA
GTACCGCAGGTAGCAGCACGTGTTCTACGTACCGCGGTGTATGATCGTCA
CCACGATGTCTGGTACTGTGTAGTCTGACAGGCGAGAGTGCGAGATTTCC
CGGGGGTGCTTCGGTGACGCGGTGACGCCGGAGTCGTAGTGGTCTTGAGT
CGATTCCAAGGCGTGGCGTGATGATGATGGCGATTTTGGCTGCGCAAAGT
GTTCACACGATTTCGATTCTGTCGCACCTACGCTCAGACCCAGCCACCTC
CGCCCCTGTCTTCCCAGAATGATATACTAACATCAGTATCAATACCAATT
TTGACAATTTTTTCCCTTCGAGTGTCTCCAAGCCCCCATTGTTGTTGAAG
GCGATCTACCAACATTTTGCACTTTTTCAGGAACACACAAGACCACGGGG
CAGTCGCG
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Coding sequence (CDS) from alignment at P-canaliculata_contig1031:24333..27540-

>mRNA_P-canaliculata_contig1031.457.1 ID=mRNA_P-canaliculata_contig1031.457.1|Name=mRNA_P-canaliculata_contig1031.457.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1368bp|location=Sequence derived from alignment at P-canaliculata_contig1031:24333..27540- (Pelvetia canaliculata dioecious)
ATGGAGTGCTGCAGGATCTACAAGGTGGAAAAGCTCGTGTCGTGCCTCTC
TACGTGCATCTTCCCCGACAAGACCACCTACCCTATCGACGAGACCATGG
TCCACAATGGCCCGCCCCACACCAGCAACGAGGGCTACGCGTACGCCAAG
CGCATGATCGACGTGCTCAACCGCTGCTACAAGATGGAGTGCTGCAGGAT
CTACAAGGTGGAAAAGCTCGTGTCGTGCCTCTCTACGTGCATCTTCCCCG
ACAAGACCACCTACCCTATCGACGAGACCATGGTCCACAATGGCCCGCCC
CACACCAGCAACGAGGGCTACGCGTACGCCAAGCGCATGATCGACGTGCT
CAACCGCTGCTACAAGGACGAGTACGGTTGCAACTTCACGTCCGTGATCC
CGACCAACATCTACGGCAAGGGGGACAACTTCTCGATCGACAACGGCCAC
GTTCTTCCCGGACTCATCCACAAGTGCTACAAGGCCAAGCAGGACGAGTA
CGGTTGCAACTTCACGTCCGTGATCCCGACCAACATCTACGGCAAGGGGG
ACAACTTCTCGATCGACAACGGCCACGTTCTTCCCGGACTCATCCACAAG
TGCTACAAGGCCAAGCAGGCGGGAGAGGACCTTCACGTATGGGGAACGGG
GAGCCCGCTCCGTCAGTTCATCTACAACGTCGACCTCGGCGCTCTCATGG
CGAGTGGAGCGGGAGAGGACCTTCACGTATGGGGAACGGGGAGCCCGCTC
CGTCAGTTCATCTACAACGTCGACCTCGGCGCTCTCATGGCGAGTGGAAT
TTGGGCTATGCGCAATTACCACGAGACTGATCCGATAATCTTGTCGGTCG
GAGAGGAGGACGAGGTTTCCATTGCGGACGCGGCGAAGATGATCGCCACT
GCCATGGACTTTGAGGGGAACGTCGTCTTCGACACGGATAAGATTTGGGC
TATGCGCAATTACCACGAGACTGATCCGATAATCTTGTCGGTCGGAGAGG
AGGACGAGGTTTCCATTGCGGACGCGGCGAAGATGATCGCCACTGCCATG
GACTTTGAGGGGAACGTCGTCTTCGACACGGATAAGTCGGACGGGCAGTT
CAAGAAAACGGCGTGCAACGACCTCCTCAAGAAGTTAAACCCGGGCTTCA
AGTTCACCCCCATGCCGGAGGGCCTCAAGGCGTCGGACGGGCAGTTCAAG
AAAACGGCGTGCAACGACCTCCTCAAGAAGTTAAACCCGGGCTTCAAGTT
CACCCCCATGCCGGAGGGCCTCAAGGCGGCGTGCGACTGGTTCTGCGAGA
ACTACGAGACGGCCCGCAAGTAAGCGTGCGACTGGTTCTGCGAGAACTAC
GAGACGGCCCGCAAGTAA
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