mRNA_P-canaliculata_contig1031.456.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig1031.456.1
Unique NamemRNA_P-canaliculata_contig1031.456.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig1031.456.1 vs. uniprot
Match: D7FW32_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW32_ECTSI)

HSP 1 Score: 480 bits (1236), Expect = 1.920e-162
Identity = 249/412 (60.44%), Postives = 304/412 (73.79%), Query Frame = 1
Query:    1 LTPLLSEERADDPEGLWVTKQYGNLKESDHLRVADYVTGSVEVRQLRSEFKLSFLDIELVNRFKSTRLS-VVDADDTESNESSRNVQRTDEKETAVIRLYVYLTKKKAKMRMTDLEETATLLLLDVGQEGCICLGKSFGNFGQGLPRVPDPIVYKGIVIAKRKEDAPATXXXXXXXXXXXXXXXXXXXXXEVLLGLAEDKYRITRYTKTVPTLKTDKDLERGARKYKRTAVKA*ETLSIPVDEEIGFGAFKRVFEELNLEITEGRALRLFKICDLNGSGTIGISELEVALMIYDVVPTTPYLTPLDWFDTFDLDGGGDLSWLEFKEAAEIIGRAKITEPRLTKLFDNVDSNKSGAIKYTEFKQVWLELVDLEQEVKRRGIEPALGPMARFRNKRLLLKAVEEDDRITEDTFQ 1233
            + PLLS+ERAD+P GLW TKQYG+LKE D LR ADYVTGSVEVRQLRS +KLSF DI  VNRFK      +  A D ES+ES   ++R + ++ A +RLYV+LTKKKAK RM DLEETA LL L+VG+EGCIC G +FGNF QG+ +VP+P  YKGI IAKRK D P T                     EV+LGLAEDK R+TRY K  PT+KTD DL +G RKY RTA KA E +SIP D+ I F  FK  F+ELNL I EGRAL+LFK CDL+G+G IG+SELEVALM++DVVPTT YLTPLD F+ FDLDGGGD+SW+EFKEAAE+I   K+ E +  +LFD VD++KSG I+Y EFKQ WL +V+LEQE+K RG +PA GPM+  RN+R+L +AVE++DR T + F+
Sbjct:    7 VAPLLSKERADEPGGLWATKQYGDLKEGDRLRAADYVTGSVEVRQLRSVYKLSFTDIARVNRFKPVEAQEIAMAGDEESDESVAALRRAEREQNASVRLYVFLTKKKAKTRMADLEETAFLLRLEVGKEGCICFGDTFGNFEQGMLQVPNPTGYKGIAIAKRKADEPKTDEPIIYAYARIVPKRRPVVASEVVLGLAEDKDRVTRYAKAAPTVKTDDDLLKGVRKYTRTARKAWEAMSIPEDQGIDFEGFKLAFDELNLVIMEGRALQLFKACDLSGTGMIGVSELEVALMMHDVVPTTSYLTPLDSFNVFDLDGGGDISWVEFKEAAEVIAGGKLNEEQTKELFDKVDTDKSGVIEYEEFKQAWLAMVNLEQEIKARGRKPAFGPMSSTRNRRILAQAVEDEDRATTEVFK 418          
BLAST of mRNA_P-canaliculata_contig1031.456.1 vs. uniprot
Match: A0A6H5JF42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF42_9PHAE)

HSP 1 Score: 479 bits (1234), Expect = 8.420e-156
Identity = 248/412 (60.19%), Postives = 305/412 (74.03%), Query Frame = 1
Query:    1 LTPLLSEERADDPEGLWVTKQYGNLKESDHLRVADYVTGSVEVRQLRSEFKLSFLDIELVNRFKSTRLS-VVDADDTESNESSRNVQRTDEKETAVIRLYVYLTKKKAKMRMTDLEETATLLLLDVGQEGCICLGKSFGNFGQGLPRVPDPIVYKGIVIAKRKEDAPATXXXXXXXXXXXXXXXXXXXXXEVLLGLAEDKYRITRYTKTVPTLKTDKDLERGARKYKRTAVKA*ETLSIPVDEEIGFGAFKRVFEELNLEITEGRALRLFKICDLNGSGTIGISELEVALMIYDVVPTTPYLTPLDWFDTFDLDGGGDLSWLEFKEAAEIIGRAKITEPRLTKLFDNVDSNKSGAIKYTEFKQVWLELVDLEQEVKRRGIEPALGPMARFRNKRLLLKAVEEDDRITEDTFQ 1233
            + PLLS+ERAD+P GLW TKQYG+LKE D LR ADY+TGSVEVRQLRS +KLSF DI  VNRFK      +    D ES+ES   ++RT+ ++ A +RLYV+LTKKKAK RM DLEETA LL L+VG+EGCIC G +FGNF QG+ +VP+P  YKGI IAKRK D P T                     EV+LGLAEDK R+TRYTK  PT+KTD DL +G RKY RTA KA E +SIP D++I F  FK  F+ELNL I EGRAL+LFK CDL+G+G IG+SELEVALM++DVVPTT +LTPLD F+ FDLDGGGD+SW+EFKEAAE+I   K+ E +   LFD VD++KSG I+Y EFKQ WL +V+LEQE+K RG +PA GPM+  RN+R+L +AVE++DR T + F+
Sbjct:    7 VAPLLSKERADEPGGLWATKQYGDLKEGDRLRAADYITGSVEVRQLRSVYKLSFTDIARVNRFKPAEAQEIAMPGDEESDESVAALRRTEREQNASVRLYVFLTKKKAKTRMADLEETAFLLRLEVGKEGCICFGDTFGNFEQGMLQVPNPTGYKGIAIAKRKADEPKTDEPIIYAYARIVPKRRPVVASEVVLGLAEDKDRVTRYTKAAPTVKTDDDLLKGVRKYTRTARKAWEAMSIPEDKKIDFEGFKLAFDELNLVIMEGRALQLFKACDLSGTGMIGVSELEVALMMHDVVPTTSHLTPLDSFNVFDLDGGGDISWVEFKEAAEVIAGGKLNEEQTKGLFDKVDTDKSGVIEYEEFKQAWLAMVNLEQEIKARGRKPAFGPMSSTRNRRILAQAVEDEDRATTEVFK 418          
BLAST of mRNA_P-canaliculata_contig1031.456.1 vs. uniprot
Match: A0A836CDR4_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDR4_9STRA)

HSP 1 Score: 189 bits (481), Expect = 1.950e-49
Identity = 144/445 (32.36%), Postives = 208/445 (46.74%), Query Frame = 1
Query:   16 SEERADDPEGLWVTKQYGNLKESD--HLRVAD-------------------------YVTGSVEVRQLRSEFKLSFLDIELVNRFKSTRLSVVDADDTESNESSRNVQRTDEKETAVI------------RLYVYLTKKKAKMRMTDLEETATLLLLDVGQEGCICLGKSFGNFGQGLPRVPDPIVYKGIVIAKRKEDAPATXXXXXXXXXXXXXXXXXXXXXEVLLGLAEDKYRITRY----TKTVP-TLKTDKDLERGARKYKRTAVKA*ETLSIPVDEEIGFGAFK-RVFEELNLEITEGRALRLFKICDLNGSGTIGISELEVALMIYDVVPTTPYLTPLDWFDTFDLDGGGDLSWLEFKEAAEIIGRAKITEPRLTKLFDNVDSNKSGAIKYTEFKQVWLELVDLEQEVKRRGIEPAL--GPMARFRNKRLLLKAVEEDD 1209
            S +RA +P+GLWV +QYG+ +  D   LR A                           VTGSVEVRQLRS  KLSF+++ L +    +  +      T +          ++ E A+             +LY YLTKKK K RM DLEET  LLL+D   +G IC   ++G+F Q L  VP    Y G VI KR +DAP T                        LG+ +DK R+ R+    T T P T K+DK+L R  + Y RT+  A + L + V        +  +  ++LN+ + E RALRLF+ CDL G+G IG++E E A+++    P     +  D                        +    + E  L  L++ +  +  G + Y  FKQ WLELVD+E E++ RG++ A+  G  +  RNK  L++AVE+ D
Sbjct:   26 STKRAGEPDGLWVARQYGDFEPGDLRKLRAATATRGNTPAQAGDVPLSPHQQPDKELIVTGSVEVRQLRSMLKLSFVNLALQSASTKSEANAAGGSSTGTLSLRSGADLAEQLEAALSDTGSVGVEQWAPKLYCYLTKKKPKARMADLEETGFLLLMDSSSDGSICQAPAYGSFDQSLLHVPSASEYCGAVIVKRAQDAPVTEEPVVLGFARLLQQRRPLVAAAAALGMQDDKDRVQRFDATKTDTAPATKKSDKELMRDVKMYARTSKMAWQALCVQVHFSHNSHMYLIQGLDQLNIVVLESRALRLFQQCDLQGTGRIGLTEFEAAMVLGGSRPKRNDASNAD------------------------LAHDPLNEVALLALYNKMLPSPYGEMAYEHFKQAWLELVDVEAELRLRGLDHAIRTGFRSVKRNKAALIEAVEQAD 446          
BLAST of mRNA_P-canaliculata_contig1031.456.1 vs. uniprot
Match: A0A8J2X2P9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X2P9_9STRA)

HSP 1 Score: 144 bits (362), Expect = 1.900e-33
Identity = 123/402 (30.60%), Postives = 181/402 (45.02%), Query Frame = 1
Query:   10 LLSEERADDPEGLWVTKQYGNLKESDHLRVADYVTGSVEVRQLRSEFKLSFLDIELVNRFKSTRLSVVDADDTESNESSRNVQR-TDEKETAVIRLYVYLTKKKAKMRMTDLEETATLLLL--DVGQEGCICLGKS-FGNFGQGLPRVPD-PIVYKGIVIAKRKEDAPATXXXXXXXXXXXXXXXXXXXXXEVLLGLAEDKYRITRYTKTVPTLKTD---KDLERGARKYKRTAVKA*ETLSIPVDEEIGFGAFKRVFEELNLEITEGRALRLFKICDLNGSGTIGISELEVALMIYDVVPTTPYLTPLDWFDTFDLDGGGDLSWLEFKEAA-------EIIGRAKITEPR---LTKLFDNVDSNKSGAIKYTEFKQVWLELVDLEQEVKRRGIEPALGPMA 1161
            +LS ERA   +GLW  ++YG+    D      +VTG VE+RQL   FKLSF  +                           VQR  D    + ++  V+LT+KKAK RM DLEET   + +  D+ + G +C G +  G F   L   PD P++Y+G+ IAK  +D P T                     E +LGL E++  +    KT+    TD   K ++   R   R A KA + L +  +++IGF  FKR  + L+L + E RA+                       MI D  P    LTP D F  FDLD  G ++   F+          ++ G+   +E R   +   FD +D ++SG I YT F+  W++LVD+  E+ +R  +P   P A
Sbjct:   10 ILSSERAQLVDGLWTIQKYGDFAPGDKRLARVFVTGRVEMRQLGGLFKLSFDGLA--------------------------VQRLADNPSQSPLKAKVFLTRKKAKKRMADLEETGYSVPISRDLDKNGFVCSGDATLGTFDLTLRNAPDNPLLYRGLCIAKSAQDTPLTEEPAVYGFVRFVDDRPQITTTENVLGLHENEDLMGN--KTIMHDGTDSKYKPIQAYTRTALRRARKAWKALELAEEQQIGFDEFKRALDLLDLTLLETRAMXXXXXXXXXXXXXXXXXXXXXXXMINDSTPDLG-LTPNDAFRMFDLDQTGKITKTAFRRVIGALGAGEKLPGKTVDSEERKMAIEAFFDKLDLDRSGEISYTTFRSAWVKLVDVNTELTKRQRKPYSVPRA 382          
BLAST of mRNA_P-canaliculata_contig1031.456.1 vs. uniprot
Match: A0A662WT10_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WT10_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 8.890e-15
Identity = 55/163 (33.74%), Postives = 88/163 (53.99%), Query Frame = 1
Query:  709 SIPVDEEIGFG----AFKRVFEELN-------LEITEGRALRLFKICDLNGSGTIGISELEVALMIYDVV--------PTTPYLTPLDWFDTFDLDGGGDLSWLEFKEAAEIIGRAKITEPRLTKLFDNVDSNKSGAIKYTEFKQVWLELVDLEQEVKRRGIE 1140
            ++  DE++G G    A KR    LN       + I+E +A+R+F+ CD +G G I  +E ++AL   D V        P+T  L P D F+ FD DG G +  LEF +  E      +++ +   +F   D +KSG I Y EF+ +W+ LVD+ +E+ +RG++
Sbjct:   36 NVGADEDLGEGEAAEAEKRKVAVLNSKLPDLGVSISEAKAMRIFRNCDTDGGGEIDRTEFKMALFAVDPVSGNTLGFSPST-LLGPRDAFELFDEDGTGQIDELEFADVLEYFDM-DVSDAKQETIFKKYDKDKSGYIDYKEFRAMWVRLVDVREELTKRGVK 196          
BLAST of mRNA_P-canaliculata_contig1031.456.1 vs. uniprot
Match: A0A1V9ZNY5_9STRA (Regulator of chromosome condensation (RCC1) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZNY5_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 9.350e-15
Identity = 48/133 (36.09%), Postives = 76/133 (57.14%), Query Frame = 1
Query:  766 LNLEITEGRALRLFKICDLNGSGTIGISELEVALMIYD--------VVPTTPYLTPLDWFDTFDLDGGGDLSWLEFKEAAEIIGRAKITEPRLTKLFDNVDSNKSGAIKYTEFKQVWLELVDLEQEVKRRGIE 1140
            LN+ ++  + LR+F+ CD + SG I I E ++AL   D          P++  L+P D F+ FD DG G L+ LEF +  E     K  + +  +LF   D +KSG I + EF+ +WL+ +D+E+E++ R IE
Sbjct:  186 LNISVSRPKGLRIFRACDKDKSGEIDIEEFKMALFAVDPNSGNTLQFAPSS-LLSPKDAFELFDEDGDGQLNELEFADVVEYFN-IKANDAKQERLFKKYDKDKSGFIDFQEFRAMWLQCIDVEEELRARKIE 316          
BLAST of mRNA_P-canaliculata_contig1031.456.1 vs. uniprot
Match: A0A662WMU7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMU7_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.400e-14
Identity = 46/134 (34.33%), Postives = 76/134 (56.72%), Query Frame = 1
Query:  763 ELNLEITEGRALRLFKICDLNGSGTIGISELEVALMIYDVV--------PTTPYLTPLDWFDTFDLDGGGDLSWLEFKEAAEIIGRAKITEPRLTKLFDNVDSNKSGAIKYTEFKQVWLELVDLEQEVKRRGIE 1140
            +L + I+E +A+R+F+ CD +G G I  +E ++AL   D V        P+T  L P D F+ FD DG G +  LEF +         +++ +   +F   D +KSG I Y EF+ +W+ LVD+ +E+ +RG++
Sbjct:  107 DLGVSISEAKAMRIFRKCDTDGGGEIDRTEFKMALFAVDPVSGNTLGFSPST-LLGPRDAFELFDEDGTGQIDELEFAQDVLEYFDMDVSDAKQETIFKKYDKDKSGYIDYKEFRAMWVRLVDVREELAKRGVK 239          
BLAST of mRNA_P-canaliculata_contig1031.456.1 vs. uniprot
Match: A0A0P1AEI3_PLAHL (FOG: RCC1 domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AEI3_PLAHL)

HSP 1 Score: 80.5 bits (197), Expect = 2.140e-12
Identity = 40/139 (28.78%), Postives = 77/139 (55.40%), Query Frame = 1
Query:  745 FKRVFEELNLEITEGRALRLFKICDLNGSGTIGISELEVALMIYDVVPTTP-------YLTPLDWFDTFDLDGGGDLSWLEFKEAAEIIGRAKITEPRLTKLFDNVDSNKSGAIKYTEFKQVWLELVDLEQEVKRRGIE 1140
            F  +  E+ + ++  +A+R+F+ CD +G G I ++E ++A+   D +  T        +L+P D F+ FD DG G +  LE  +  E +G   +++ +   L    D +K   I Y EF+ +W+ LV++++E+ +RG +
Sbjct:  120 FLAMLPEVGVYLSAAKAMRVFRQCDTDGGGEIDLAEFKMAMFTVDTMSHTSKRFSPSLHLSPRDVFELFDEDGSGQIDNLELADVLEYLGM-DVSDEKQEMLLKKYDKDKDEKINYEEFRAMWVSLVNVKEELMKRGAQ 257          
BLAST of mRNA_P-canaliculata_contig1031.456.1 vs. uniprot
Match: A0A329T505_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T505_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 8.600e-11
Identity = 60/226 (26.55%), Postives = 103/226 (45.58%), Query Frame = 1
Query:  586 AEDKYRITRYTKTVPTLKTDKDLERGARKYKRTAVKA*---ETLSIPVDEE----IGFGAFKRVFEELNLEITEGRALRLFKICDLNGSGTIGISELEVALMIYDVVPTTPY-------LTPLDWFDTFDLDGGGDLSWLEFKEAAEIIGRAKITEPRLTKLFDNVDSNKSGAIKYTEFKQVWLELVDLEQEVKRRGIEPALGPMARFRNKRLLLKAVEEDDRITE 1221
            ++D   I RY K V   + D+     A K K   + +    E L    D +    I    F  +  +L + I+  +A+R+                 ++A+   D V   P        L P D F+ FD DG G +  LEF +  E  G   +++ +  K+F   D++KSG I Y EF+ +W++LVD+ +E+ +RG+E  +    R    + +L+A+ E++   E
Sbjct:   50 SDDDATINRYAKDVGDEELDEKETAEAEKRKVAVLNSKLSPEELFKKYDTDGSGNISASEFLAMLPDLGISISAAKAMRIXXXXXXXXXXXXXXXXXKMAMFAVDPVSGNPLGFSPSTLLGPRDAFELFDEDGTGQIDELEFADVLEYFGM-DVSDEKQEKIFKQYDTDKSGYIDYQEFRSMWIKLVDVREELTKRGVE--VPKHIRLVKLQQMLEAILEEEEARE 272          
BLAST of mRNA_P-canaliculata_contig1031.456.1 vs. uniprot
Match: A0A8J5JEG2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JEG2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.920e-10
Identity = 47/171 (27.49%), Postives = 82/171 (47.95%), Query Frame = 1
Query:  730 IGFGAFKRVFEELNLEITEGRALRLFKICDLNGSGTIGISELEVALMIYDVVPTTPY-------LTPLDWFDTFDLDGGGDLSWLEFKEAAEIIGRAKITEPRLTKLFDNVDSNKSGAIKYTEFKQVWLELVDLEQEVKRRGIEPALGPMARFRNKRLLLKAVEEDDRITE 1221
            I    F  +  +L + I+  +A+R+                 ++A+   D V   P        L P D F+ FD DG G +  LEF +  E  G   +++ +  K+F   D +KSG I Y EF+ +W++LVD+ +E+ +RG+E  +    R    + +L+A+ E++   E
Sbjct:  105 ISASEFLAMLPDLGISISAAKAMRIXXXXXXXXXXXXXXXXXKMAMFAVDPVSGNPLGFSPSTLLGPRDAFELFDEDGTGQIDELEFADVLEYFGM-DVSDEKQEKIFKQYDKDKSGYIDYQEFRSMWIKLVDVREELTKRGVE--VPKHIRLVKLQQMLEAILEEEEARE 272          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig1031.456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FW32_ECTSI1.920e-16260.44Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JF42_9PHAE8.420e-15660.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CDR4_9STRA1.950e-4932.36EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A8J2X2P9_9STRA1.900e-3330.60Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A662WT10_9STRA8.890e-1533.74Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A1V9ZNY5_9STRA9.350e-1536.09Regulator of chromosome condensation (RCC1) n=1 Ta... [more]
A0A662WMU7_9STRA1.400e-1434.33Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A0P1AEI3_PLAHL2.140e-1228.78FOG: RCC1 domain n=1 Tax=Plasmopara halstedii TaxI... [more]
A0A329T505_9STRA8.600e-1126.55Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A8J5JEG2_9STRA1.920e-1027.49Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig1031contigP-canaliculata_contig1031:2057..4998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.7
Seed ortholog evalue6.1e-38
Seed eggNOG ortholog2880.D7FW32
KEGG rclassRC00586
KEGG koko:K01736,ko:K11414
KEGG ReactionR01714
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
EC4.2.3.5
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-01_003170.1
Exons7
Model size1281
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig1031.456.1prot_P-canaliculata_contig1031.456.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig1031 4154..4998 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.3126721-UTR-P-canaliculata_contig1031:2056..21341622815603.3126721-UTR-P-canaliculata_contig1031:2056..2134Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1031 2057..2134 +
1693494161.0330694-UTR-P-canaliculata_contig1031:2056..21341693494161.0330694-UTR-P-canaliculata_contig1031:2056..2134Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1031 2057..2134 +
1622815603.3370786-UTR-P-canaliculata_contig1031:2476..28241622815603.3370786-UTR-P-canaliculata_contig1031:2476..2824Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1031 2477..2824 +
1693494161.0460162-UTR-P-canaliculata_contig1031:2476..28241693494161.0460162-UTR-P-canaliculata_contig1031:2476..2824Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1031 2477..2824 +
1622815603.352871-UTR-P-canaliculata_contig1031:3071..32561622815603.352871-UTR-P-canaliculata_contig1031:3071..3256Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1031 3072..3256 +
1693494161.0576699-UTR-P-canaliculata_contig1031:3071..32561693494161.0576699-UTR-P-canaliculata_contig1031:3071..3256Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1031 3072..3256 +
1622815603.3646357-UTR-P-canaliculata_contig1031:3627..37581622815603.3646357-UTR-P-canaliculata_contig1031:3627..3758Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1031 3628..3758 +
1693494161.0665262-UTR-P-canaliculata_contig1031:3627..37581693494161.0665262-UTR-P-canaliculata_contig1031:3627..3758Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1031 3628..3758 +
1622815603.3752987-UTR-P-canaliculata_contig1031:4028..41531622815603.3752987-UTR-P-canaliculata_contig1031:4028..4153Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1031 4029..4153 +
1693494161.0754833-UTR-P-canaliculata_contig1031:4028..41531693494161.0754833-UTR-P-canaliculata_contig1031:4028..4153Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1031 4029..4153 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.3898363-CDS-P-canaliculata_contig1031:4153..42581622815603.3898363-CDS-P-canaliculata_contig1031:4153..4258Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1031 4154..4258 +
1693494161.0846324-CDS-P-canaliculata_contig1031:4153..42581693494161.0846324-CDS-P-canaliculata_contig1031:4153..4258Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1031 4154..4258 +
1622815603.40742-CDS-P-canaliculata_contig1031:4524..46381622815603.40742-CDS-P-canaliculata_contig1031:4524..4638Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1031 4525..4638 +
1693494161.09486-CDS-P-canaliculata_contig1031:4524..46381693494161.09486-CDS-P-canaliculata_contig1031:4524..4638Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1031 4525..4638 +
1622815603.4228132-CDS-P-canaliculata_contig1031:4803..49981622815603.4228132-CDS-P-canaliculata_contig1031:4803..4998Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1031 4804..4998 +
1693494161.1049151-CDS-P-canaliculata_contig1031:4803..49981693494161.1049151-CDS-P-canaliculata_contig1031:4803..4998Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1031 4804..4998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig1031.456.1

>prot_P-canaliculata_contig1031.456.1 ID=prot_P-canaliculata_contig1031.456.1|Name=mRNA_P-canaliculata_contig1031.456.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=138bp
MIYDVVPTTPYLTPLDWFDTFDLDGGGDLSWLEFKEAAEIIGRAKITEPR
LTKLFDNVDSNKSGAIKYTEFKQVWLELVDLEQEVKRRGIEPALGPMARF
RNKRLLLKAVEEDDRITEDTFQARFEKRGGNGADFGA*
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mRNA from alignment at P-canaliculata_contig1031:2057..4998+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig1031.456.1 ID=mRNA_P-canaliculata_contig1031.456.1|Name=mRNA_P-canaliculata_contig1031.456.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2942bp|location=Sequence derived from alignment at P-canaliculata_contig1031:2057..4998+ (Pelvetia canaliculata dioecious)
CTGACCCCTTTACTTTCCGAAGAGAGAGCGGACGACCCTGAAGGTCTTTG GGTAACGAAGCAGTACGGCAATCTCAAGGTCTGCCGTAGGTGGTGCTCTC AAGGATACATTTACAGACAGACGAAAGCACGTGTGCATGCGTATCTAGTA TAGCCGGTTTTATGCAAACAAATTGTGACGTTAACGACCCGACTAGAATA CACGTCGGAACCTTTTCGCTTTACTGTAGTTTACTAATATATGCTCTCAG ATGGACCACGCGTTGTATTGCACACGGCTTGTACTGTACATACAACGTTC TCAAGATTTTAAAAGTTTGGGAGGGTCAATTGATAGCCACCGTTCAAAAT TATGACCGAAAGCTTCCGTAGACCACATATCTACGCCGACCGATACCTCG CGCCCAAATATGTTTCACAGGAGAGTGACCACTTACGGGTCGCAGACTAT GTCACAGGCAGCGTGGAAGTGCGACAGCTGAGATCCGAGTTTAAGCTTAG CTTTCTAGACATCGAACTAGTCAATCGCTTCAAGTCTACCAGACTGTCGG TTGTGGACGCAGATGACACCGAGAGCAATGAAAGCTCAAGGAACGTTCAG AGAACAGACGAAAAAGAGACTGCGGTTATACGCCTGTATGTGTACCTTAC AAAGAAGAAGGCCAAGATGAGGATGACTGATCTAGAGGAAACGGCAACCT TGCTACTACTGGACGTCGGGCAAGAAGGGTGTATTTGCTTAGGCAAGAGC TTTGGCAATTTCGGCCAGGTTCGTCTGGCGGGCGAAAGGGGAGACACGTA TTTATTCTCGGTAGCCCAAACAATACGGACCTAGCTTCATTATGTGATGC AAGCATGTCAAAGCCTCGGGTTGCCACAAACTCCAGGATTCGTGCTATTT GATCGCTATTACTTTAGTAATCGAAACCCCCACGTCTCAAGTACCGAGGA CGCTTCCAACTAAGCTTATAGCGATACTCCGACGGCTGGACGATACTCAC ACCGCTATTGTTTAGGGTTTGCCGCGAGTTCCCGATCCCATCGTTTATAA GGGCATCGTGATCGCTAAGCGAAAGGAAGACGCGCCGGCCACGGAGGAGC CCATCATTTATGCCTACGCCAGGATCGTTAAGCGCCGTCGACCGGTCGTG GCGACAGAGGTGTTGCTTGGTCTGGCCGAGGACAAATATCGTATTACAAG GTATTAATCAAAAGCGCATCGAGCACAAAAAGAAAATTTACGGTGTTTTG GAGCCCACCCGTTGACCTCACGCGCTGTGATCGCAAGGGGTCGATGGTCT CAACTCCAGTGGCGACACGACTCGCTGACGGTCCCTTTCTGTCAGTCTTT CACGCGATGACAACAGTTGTAGTACAACGACGCCTCATTTGGTCGTATAG AAGGGTAGGGTACTCTTTGAGCGTTGAGTCAGTTGGTTCATTCGTACTGA GTCGGTGGCCCTTAGTATATTCGTACACAGCTCTGGCACAACTGCAGTTT TCGGGAGCGTCAGTACGATGCAGTTCAAGATAGTCTGAGTCCGACTCTGG TTTGTCCTTGTCGCTTCTAAGGTACACCAAAACGGTGCCGACCCTGAAGA CGGACAAAGATCTCGAACGAGGGGCACGAAAGTATAAACGGACGGCGGTG AAGGCGTGAGAGACACTTTCTATTCCAGTGGACGAAGAAATAGGCTTTGG AGGTTAGAGATCGACTGCGATTTCATAAACTTTGATGGTTCATCATAGGG CCCATGTGGTGTTGGTGCGCGATGTCGAAATGCAAAGTCTCGGATCATTA TTGATTGCAATCAAAGTTATGTTGCTACGCGTGCTGCTTGTGTGGAGCTG TATTGAAGTGCTTCCTTTGCCTTAAGCGATCGCGCACGCGTTTGTAGAAT CAACAACTTTAAACTTAGGTGTAAAAAATCGAACATGAACGCCCCCCCTC CGTCTGCGGAGACTTTCAACAGCTTTCAAGAGGGTGTTCGAAGAACTCAA CCTGGAAATAACAGAGGGTCGAGCGCTGCGGCTTTTCAAAATATGTGATC TGAACGGATCTGGTACGATCGGGATCTCAGAGCTCGAGGTGGCACTGATG ATCTACGACGTGGTCCCGACGACGCCCTATCTGACACCTCTCGATTGGTT TGATACGTTCGACCTGGATGGTGGAGGCGACCTATCTTGGCTCGAGTTCA AGGTGCTAGTCTAGTCATGATCCCCTCCATTGTAGAACGCGATGTGTGAA GACGTCCCCAAAGTCGAAGAGTTCTGGTTCTATCTAGACGCTCCTACGTG CGATATGACAAAACGAAGCCCAACCTTATCTGTCACTTGCTAGGTACGTA AGGTTTCGAATGGTTCAAATATTTCCCCAGATCCCCTGTAGACTATTAAT AGGTTTGGGGACCCCTTTCTGAGTACCAACTGTCCGGCGCCGGGTATCCT ACGCTGGACCGACGGCAGGAAGCGGCCGAGATTATAGGTAGAGCTAAGAT CACGGAGCCAAGGCTGACAAAGCTATTTGACAACGTCGACAGCAACAAAA GTGGAGCGATAAAATACACCGAATTCAAGCAGGTGAGCGTAACTTACAGC CAGAACAGGGCGACGCGGTGGCAAGGCTGACTATCGTGTGCGCCCAGAGC TTATTTCGAGCTACATTGGATCAAATACCAGCCTCTGCCTTTCAGCGCTG TTTCCCTTTTGGGGGAACACGTACGAGTTATCTCTTTACTCTTGCAGGTT TGGCTGGAATTGGTGGATCTTGAACAAGAGGTCAAGAGAAGAGGGATAGA ACCTGCGCTTGGACCGATGGCAAGGTTTCGTAATAAACGGCTGCTGCTCA AGGCCGTGGAAGAGGACGATCGGATCACGGAGGACACATTCCAGGCACGC TTTGAAAAAAGAGGTGGAAACGGTGCCGACTTTGGCGCTTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig1031:2057..4998+

>mRNA_P-canaliculata_contig1031.456.1 ID=mRNA_P-canaliculata_contig1031.456.1|Name=mRNA_P-canaliculata_contig1031.456.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at P-canaliculata_contig1031:2057..4998+ (Pelvetia canaliculata dioecious)
ATGATCTACGACGTGGTCCCGACGACGCCCTATCTGACACCTCTCGATTG
GTTTGATACGTTCGACCTGGATGGTGGAGGCGACCTATCTTGGCTCGAGT
TCAAGATGATCTACGACGTGGTCCCGACGACGCCCTATCTGACACCTCTC
GATTGGTTTGATACGTTCGACCTGGATGGTGGAGGCGACCTATCTTGGCT
CGAGTTCAAGGAAGCGGCCGAGATTATAGGTAGAGCTAAGATCACGGAGC
CAAGGCTGACAAAGCTATTTGACAACGTCGACAGCAACAAAAGTGGAGCG
ATAAAATACACCGAATTCAAGCAGGAAGCGGCCGAGATTATAGGTAGAGC
TAAGATCACGGAGCCAAGGCTGACAAAGCTATTTGACAACGTCGACAGCA
ACAAAAGTGGAGCGATAAAATACACCGAATTCAAGCAGGTTTGGCTGGAA
TTGGTGGATCTTGAACAAGAGGTCAAGAGAAGAGGGATAGAACCTGCGCT
TGGACCGATGGCAAGGTTTCGTAATAAACGGCTGCTGCTCAAGGCCGTGG
AAGAGGACGATCGGATCACGGAGGACACATTCCAGGCACGCTTTGAAAAA
AGAGGTGGAAACGGTGCCGACTTTGGCGCTTGAGTTTGGCTGGAATTGGT
GGATCTTGAACAAGAGGTCAAGAGAAGAGGGATAGAACCTGCGCTTGGAC
CGATGGCAAGGTTTCGTAATAAACGGCTGCTGCTCAAGGCCGTGGAAGAG
GACGATCGGATCACGGAGGACACATTCCAGGCACGCTTTGAAAAAAGAGG
TGGAAACGGTGCCGACTTTGGCGCTTGA
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