mRNA_P-canaliculata_contig1031.456.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig1031.456.1 vs. uniprot
Match: D7FW32_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW32_ECTSI) HSP 1 Score: 480 bits (1236), Expect = 1.920e-162 Identity = 249/412 (60.44%), Postives = 304/412 (73.79%), Query Frame = 1
Query: 1 LTPLLSEERADDPEGLWVTKQYGNLKESDHLRVADYVTGSVEVRQLRSEFKLSFLDIELVNRFKSTRLS-VVDADDTESNESSRNVQRTDEKETAVIRLYVYLTKKKAKMRMTDLEETATLLLLDVGQEGCICLGKSFGNFGQGLPRVPDPIVYKGIVIAKRKEDAPATXXXXXXXXXXXXXXXXXXXXXEVLLGLAEDKYRITRYTKTVPTLKTDKDLERGARKYKRTAVKA*ETLSIPVDEEIGFGAFKRVFEELNLEITEGRALRLFKICDLNGSGTIGISELEVALMIYDVVPTTPYLTPLDWFDTFDLDGGGDLSWLEFKEAAEIIGRAKITEPRLTKLFDNVDSNKSGAIKYTEFKQVWLELVDLEQEVKRRGIEPALGPMARFRNKRLLLKAVEEDDRITEDTFQ 1233
+ PLLS+ERAD+P GLW TKQYG+LKE D LR ADYVTGSVEVRQLRS +KLSF DI VNRFK + A D ES+ES ++R + ++ A +RLYV+LTKKKAK RM DLEETA LL L+VG+EGCIC G +FGNF QG+ +VP+P YKGI IAKRK D P T EV+LGLAEDK R+TRY K PT+KTD DL +G RKY RTA KA E +SIP D+ I F FK F+ELNL I EGRAL+LFK CDL+G+G IG+SELEVALM++DVVPTT YLTPLD F+ FDLDGGGD+SW+EFKEAAE+I K+ E + +LFD VD++KSG I+Y EFKQ WL +V+LEQE+K RG +PA GPM+ RN+R+L +AVE++DR T + F+
Sbjct: 7 VAPLLSKERADEPGGLWATKQYGDLKEGDRLRAADYVTGSVEVRQLRSVYKLSFTDIARVNRFKPVEAQEIAMAGDEESDESVAALRRAEREQNASVRLYVFLTKKKAKTRMADLEETAFLLRLEVGKEGCICFGDTFGNFEQGMLQVPNPTGYKGIAIAKRKADEPKTDEPIIYAYARIVPKRRPVVASEVVLGLAEDKDRVTRYAKAAPTVKTDDDLLKGVRKYTRTARKAWEAMSIPEDQGIDFEGFKLAFDELNLVIMEGRALQLFKACDLSGTGMIGVSELEVALMMHDVVPTTSYLTPLDSFNVFDLDGGGDISWVEFKEAAEVIAGGKLNEEQTKELFDKVDTDKSGVIEYEEFKQAWLAMVNLEQEIKARGRKPAFGPMSSTRNRRILAQAVEDEDRATTEVFK 418
BLAST of mRNA_P-canaliculata_contig1031.456.1 vs. uniprot
Match: A0A6H5JF42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF42_9PHAE) HSP 1 Score: 479 bits (1234), Expect = 8.420e-156 Identity = 248/412 (60.19%), Postives = 305/412 (74.03%), Query Frame = 1
Query: 1 LTPLLSEERADDPEGLWVTKQYGNLKESDHLRVADYVTGSVEVRQLRSEFKLSFLDIELVNRFKSTRLS-VVDADDTESNESSRNVQRTDEKETAVIRLYVYLTKKKAKMRMTDLEETATLLLLDVGQEGCICLGKSFGNFGQGLPRVPDPIVYKGIVIAKRKEDAPATXXXXXXXXXXXXXXXXXXXXXEVLLGLAEDKYRITRYTKTVPTLKTDKDLERGARKYKRTAVKA*ETLSIPVDEEIGFGAFKRVFEELNLEITEGRALRLFKICDLNGSGTIGISELEVALMIYDVVPTTPYLTPLDWFDTFDLDGGGDLSWLEFKEAAEIIGRAKITEPRLTKLFDNVDSNKSGAIKYTEFKQVWLELVDLEQEVKRRGIEPALGPMARFRNKRLLLKAVEEDDRITEDTFQ 1233
+ PLLS+ERAD+P GLW TKQYG+LKE D LR ADY+TGSVEVRQLRS +KLSF DI VNRFK + D ES+ES ++RT+ ++ A +RLYV+LTKKKAK RM DLEETA LL L+VG+EGCIC G +FGNF QG+ +VP+P YKGI IAKRK D P T EV+LGLAEDK R+TRYTK PT+KTD DL +G RKY RTA KA E +SIP D++I F FK F+ELNL I EGRAL+LFK CDL+G+G IG+SELEVALM++DVVPTT +LTPLD F+ FDLDGGGD+SW+EFKEAAE+I K+ E + LFD VD++KSG I+Y EFKQ WL +V+LEQE+K RG +PA GPM+ RN+R+L +AVE++DR T + F+
Sbjct: 7 VAPLLSKERADEPGGLWATKQYGDLKEGDRLRAADYITGSVEVRQLRSVYKLSFTDIARVNRFKPAEAQEIAMPGDEESDESVAALRRTEREQNASVRLYVFLTKKKAKTRMADLEETAFLLRLEVGKEGCICFGDTFGNFEQGMLQVPNPTGYKGIAIAKRKADEPKTDEPIIYAYARIVPKRRPVVASEVVLGLAEDKDRVTRYTKAAPTVKTDDDLLKGVRKYTRTARKAWEAMSIPEDKKIDFEGFKLAFDELNLVIMEGRALQLFKACDLSGTGMIGVSELEVALMMHDVVPTTSHLTPLDSFNVFDLDGGGDISWVEFKEAAEVIAGGKLNEEQTKGLFDKVDTDKSGVIEYEEFKQAWLAMVNLEQEIKARGRKPAFGPMSSTRNRRILAQAVEDEDRATTEVFK 418
BLAST of mRNA_P-canaliculata_contig1031.456.1 vs. uniprot
Match: A0A836CDR4_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDR4_9STRA) HSP 1 Score: 189 bits (481), Expect = 1.950e-49 Identity = 144/445 (32.36%), Postives = 208/445 (46.74%), Query Frame = 1
Query: 16 SEERADDPEGLWVTKQYGNLKESD--HLRVAD-------------------------YVTGSVEVRQLRSEFKLSFLDIELVNRFKSTRLSVVDADDTESNESSRNVQRTDEKETAVI------------RLYVYLTKKKAKMRMTDLEETATLLLLDVGQEGCICLGKSFGNFGQGLPRVPDPIVYKGIVIAKRKEDAPATXXXXXXXXXXXXXXXXXXXXXEVLLGLAEDKYRITRY----TKTVP-TLKTDKDLERGARKYKRTAVKA*ETLSIPVDEEIGFGAFK-RVFEELNLEITEGRALRLFKICDLNGSGTIGISELEVALMIYDVVPTTPYLTPLDWFDTFDLDGGGDLSWLEFKEAAEIIGRAKITEPRLTKLFDNVDSNKSGAIKYTEFKQVWLELVDLEQEVKRRGIEPAL--GPMARFRNKRLLLKAVEEDD 1209
S +RA +P+GLWV +QYG+ + D LR A VTGSVEVRQLRS KLSF+++ L + + + T + ++ E A+ +LY YLTKKK K RM DLEET LLL+D +G IC ++G+F Q L VP Y G VI KR +DAP T LG+ +DK R+ R+ T T P T K+DK+L R + Y RT+ A + L + V + + ++LN+ + E RALRLF+ CDL G+G IG++E E A+++ P + D + + E L L++ + + G + Y FKQ WLELVD+E E++ RG++ A+ G + RNK L++AVE+ D
Sbjct: 26 STKRAGEPDGLWVARQYGDFEPGDLRKLRAATATRGNTPAQAGDVPLSPHQQPDKELIVTGSVEVRQLRSMLKLSFVNLALQSASTKSEANAAGGSSTGTLSLRSGADLAEQLEAALSDTGSVGVEQWAPKLYCYLTKKKPKARMADLEETGFLLLMDSSSDGSICQAPAYGSFDQSLLHVPSASEYCGAVIVKRAQDAPVTEEPVVLGFARLLQQRRPLVAAAAALGMQDDKDRVQRFDATKTDTAPATKKSDKELMRDVKMYARTSKMAWQALCVQVHFSHNSHMYLIQGLDQLNIVVLESRALRLFQQCDLQGTGRIGLTEFEAAMVLGGSRPKRNDASNAD------------------------LAHDPLNEVALLALYNKMLPSPYGEMAYEHFKQAWLELVDVEAELRLRGLDHAIRTGFRSVKRNKAALIEAVEQAD 446
BLAST of mRNA_P-canaliculata_contig1031.456.1 vs. uniprot
Match: A0A8J2X2P9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X2P9_9STRA) HSP 1 Score: 144 bits (362), Expect = 1.900e-33 Identity = 123/402 (30.60%), Postives = 181/402 (45.02%), Query Frame = 1
Query: 10 LLSEERADDPEGLWVTKQYGNLKESDHLRVADYVTGSVEVRQLRSEFKLSFLDIELVNRFKSTRLSVVDADDTESNESSRNVQR-TDEKETAVIRLYVYLTKKKAKMRMTDLEETATLLLL--DVGQEGCICLGKS-FGNFGQGLPRVPD-PIVYKGIVIAKRKEDAPATXXXXXXXXXXXXXXXXXXXXXEVLLGLAEDKYRITRYTKTVPTLKTD---KDLERGARKYKRTAVKA*ETLSIPVDEEIGFGAFKRVFEELNLEITEGRALRLFKICDLNGSGTIGISELEVALMIYDVVPTTPYLTPLDWFDTFDLDGGGDLSWLEFKEAA-------EIIGRAKITEPR---LTKLFDNVDSNKSGAIKYTEFKQVWLELVDLEQEVKRRGIEPALGPMA 1161
+LS ERA +GLW ++YG+ D +VTG VE+RQL FKLSF + VQR D + ++ V+LT+KKAK RM DLEET + + D+ + G +C G + G F L PD P++Y+G+ IAK +D P T E +LGL E++ + KT+ TD K ++ R R A KA + L + +++IGF FKR + L+L + E RA+ MI D P LTP D F FDLD G ++ F+ ++ G+ +E R + FD +D ++SG I YT F+ W++LVD+ E+ +R +P P A
Sbjct: 10 ILSSERAQLVDGLWTIQKYGDFAPGDKRLARVFVTGRVEMRQLGGLFKLSFDGLA--------------------------VQRLADNPSQSPLKAKVFLTRKKAKKRMADLEETGYSVPISRDLDKNGFVCSGDATLGTFDLTLRNAPDNPLLYRGLCIAKSAQDTPLTEEPAVYGFVRFVDDRPQITTTENVLGLHENEDLMGN--KTIMHDGTDSKYKPIQAYTRTALRRARKAWKALELAEEQQIGFDEFKRALDLLDLTLLETRAMXXXXXXXXXXXXXXXXXXXXXXXMINDSTPDLG-LTPNDAFRMFDLDQTGKITKTAFRRVIGALGAGEKLPGKTVDSEERKMAIEAFFDKLDLDRSGEISYTTFRSAWVKLVDVNTELTKRQRKPYSVPRA 382
BLAST of mRNA_P-canaliculata_contig1031.456.1 vs. uniprot
Match: A0A662WT10_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WT10_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 8.890e-15 Identity = 55/163 (33.74%), Postives = 88/163 (53.99%), Query Frame = 1
Query: 709 SIPVDEEIGFG----AFKRVFEELN-------LEITEGRALRLFKICDLNGSGTIGISELEVALMIYDVV--------PTTPYLTPLDWFDTFDLDGGGDLSWLEFKEAAEIIGRAKITEPRLTKLFDNVDSNKSGAIKYTEFKQVWLELVDLEQEVKRRGIE 1140
++ DE++G G A KR LN + I+E +A+R+F+ CD +G G I +E ++AL D V P+T L P D F+ FD DG G + LEF + E +++ + +F D +KSG I Y EF+ +W+ LVD+ +E+ +RG++
Sbjct: 36 NVGADEDLGEGEAAEAEKRKVAVLNSKLPDLGVSISEAKAMRIFRNCDTDGGGEIDRTEFKMALFAVDPVSGNTLGFSPST-LLGPRDAFELFDEDGTGQIDELEFADVLEYFDM-DVSDAKQETIFKKYDKDKSGYIDYKEFRAMWVRLVDVREELTKRGVK 196
BLAST of mRNA_P-canaliculata_contig1031.456.1 vs. uniprot
Match: A0A1V9ZNY5_9STRA (Regulator of chromosome condensation (RCC1) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZNY5_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 9.350e-15 Identity = 48/133 (36.09%), Postives = 76/133 (57.14%), Query Frame = 1
Query: 766 LNLEITEGRALRLFKICDLNGSGTIGISELEVALMIYD--------VVPTTPYLTPLDWFDTFDLDGGGDLSWLEFKEAAEIIGRAKITEPRLTKLFDNVDSNKSGAIKYTEFKQVWLELVDLEQEVKRRGIE 1140
LN+ ++ + LR+F+ CD + SG I I E ++AL D P++ L+P D F+ FD DG G L+ LEF + E K + + +LF D +KSG I + EF+ +WL+ +D+E+E++ R IE
Sbjct: 186 LNISVSRPKGLRIFRACDKDKSGEIDIEEFKMALFAVDPNSGNTLQFAPSS-LLSPKDAFELFDEDGDGQLNELEFADVVEYFN-IKANDAKQERLFKKYDKDKSGFIDFQEFRAMWLQCIDVEEELRARKIE 316
BLAST of mRNA_P-canaliculata_contig1031.456.1 vs. uniprot
Match: A0A662WMU7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMU7_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.400e-14 Identity = 46/134 (34.33%), Postives = 76/134 (56.72%), Query Frame = 1
Query: 763 ELNLEITEGRALRLFKICDLNGSGTIGISELEVALMIYDVV--------PTTPYLTPLDWFDTFDLDGGGDLSWLEFKEAAEIIGRAKITEPRLTKLFDNVDSNKSGAIKYTEFKQVWLELVDLEQEVKRRGIE 1140
+L + I+E +A+R+F+ CD +G G I +E ++AL D V P+T L P D F+ FD DG G + LEF + +++ + +F D +KSG I Y EF+ +W+ LVD+ +E+ +RG++
Sbjct: 107 DLGVSISEAKAMRIFRKCDTDGGGEIDRTEFKMALFAVDPVSGNTLGFSPST-LLGPRDAFELFDEDGTGQIDELEFAQDVLEYFDMDVSDAKQETIFKKYDKDKSGYIDYKEFRAMWVRLVDVREELAKRGVK 239
BLAST of mRNA_P-canaliculata_contig1031.456.1 vs. uniprot
Match: A0A0P1AEI3_PLAHL (FOG: RCC1 domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AEI3_PLAHL) HSP 1 Score: 80.5 bits (197), Expect = 2.140e-12 Identity = 40/139 (28.78%), Postives = 77/139 (55.40%), Query Frame = 1
Query: 745 FKRVFEELNLEITEGRALRLFKICDLNGSGTIGISELEVALMIYDVVPTTP-------YLTPLDWFDTFDLDGGGDLSWLEFKEAAEIIGRAKITEPRLTKLFDNVDSNKSGAIKYTEFKQVWLELVDLEQEVKRRGIE 1140
F + E+ + ++ +A+R+F+ CD +G G I ++E ++A+ D + T +L+P D F+ FD DG G + LE + E +G +++ + L D +K I Y EF+ +W+ LV++++E+ +RG +
Sbjct: 120 FLAMLPEVGVYLSAAKAMRVFRQCDTDGGGEIDLAEFKMAMFTVDTMSHTSKRFSPSLHLSPRDVFELFDEDGSGQIDNLELADVLEYLGM-DVSDEKQEMLLKKYDKDKDEKINYEEFRAMWVSLVNVKEELMKRGAQ 257
BLAST of mRNA_P-canaliculata_contig1031.456.1 vs. uniprot
Match: A0A329T505_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T505_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 8.600e-11 Identity = 60/226 (26.55%), Postives = 103/226 (45.58%), Query Frame = 1
Query: 586 AEDKYRITRYTKTVPTLKTDKDLERGARKYKRTAVKA*---ETLSIPVDEE----IGFGAFKRVFEELNLEITEGRALRLFKICDLNGSGTIGISELEVALMIYDVVPTTPY-------LTPLDWFDTFDLDGGGDLSWLEFKEAAEIIGRAKITEPRLTKLFDNVDSNKSGAIKYTEFKQVWLELVDLEQEVKRRGIEPALGPMARFRNKRLLLKAVEEDDRITE 1221
++D I RY K V + D+ A K K + + E L D + I F + +L + I+ +A+R+ ++A+ D V P L P D F+ FD DG G + LEF + E G +++ + K+F D++KSG I Y EF+ +W++LVD+ +E+ +RG+E + R + +L+A+ E++ E
Sbjct: 50 SDDDATINRYAKDVGDEELDEKETAEAEKRKVAVLNSKLSPEELFKKYDTDGSGNISASEFLAMLPDLGISISAAKAMRIXXXXXXXXXXXXXXXXXKMAMFAVDPVSGNPLGFSPSTLLGPRDAFELFDEDGTGQIDELEFADVLEYFGM-DVSDEKQEKIFKQYDTDKSGYIDYQEFRSMWIKLVDVREELTKRGVE--VPKHIRLVKLQQMLEAILEEEEARE 272
BLAST of mRNA_P-canaliculata_contig1031.456.1 vs. uniprot
Match: A0A8J5JEG2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JEG2_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 1.920e-10 Identity = 47/171 (27.49%), Postives = 82/171 (47.95%), Query Frame = 1
Query: 730 IGFGAFKRVFEELNLEITEGRALRLFKICDLNGSGTIGISELEVALMIYDVVPTTPY-------LTPLDWFDTFDLDGGGDLSWLEFKEAAEIIGRAKITEPRLTKLFDNVDSNKSGAIKYTEFKQVWLELVDLEQEVKRRGIEPALGPMARFRNKRLLLKAVEEDDRITE 1221
I F + +L + I+ +A+R+ ++A+ D V P L P D F+ FD DG G + LEF + E G +++ + K+F D +KSG I Y EF+ +W++LVD+ +E+ +RG+E + R + +L+A+ E++ E
Sbjct: 105 ISASEFLAMLPDLGISISAAKAMRIXXXXXXXXXXXXXXXXXKMAMFAVDPVSGNPLGFSPSTLLGPRDAFELFDEDGTGQIDELEFADVLEYFGM-DVSDEKQEKIFKQYDKDKSGYIDYQEFRSMWIKLVDVREELTKRGVE--VPKHIRLVKLQQMLEAILEEEEARE 272 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig1031.456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig1031.456.1 >prot_P-canaliculata_contig1031.456.1 ID=prot_P-canaliculata_contig1031.456.1|Name=mRNA_P-canaliculata_contig1031.456.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=138bp MIYDVVPTTPYLTPLDWFDTFDLDGGGDLSWLEFKEAAEIIGRAKITEPRback to top mRNA from alignment at P-canaliculata_contig1031:2057..4998+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig1031.456.1 ID=mRNA_P-canaliculata_contig1031.456.1|Name=mRNA_P-canaliculata_contig1031.456.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2942bp|location=Sequence derived from alignment at P-canaliculata_contig1031:2057..4998+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig1031:2057..4998+ >mRNA_P-canaliculata_contig1031.456.1 ID=mRNA_P-canaliculata_contig1031.456.1|Name=mRNA_P-canaliculata_contig1031.456.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at P-canaliculata_contig1031:2057..4998+ (Pelvetia canaliculata dioecious)back to top |