mRNA_P-canaliculata_contig10308.448.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10308.448.1
Unique NamemRNA_P-canaliculata_contig10308.448.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig10308.448.1 vs. uniprot
Match: D7G924_ECTSI (UPF0020 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G924_ECTSI)

HSP 1 Score: 355 bits (912), Expect = 7.130e-112
Identity = 200/362 (55.25%), Postives = 237/362 (65.47%), Query Frame = 1
Query:  325 NSEVRIRIIEDTCPPAAGNIPRHVRKRPWEATAGKA---TWFYICRELQIGPAVG-SGVDMGTTC-RRPVRGILNTLALNKRRSRGSTAIEPEIALVMANLARVRPGSRVLDPFCGSLSLLLPAAFMGAMTWGSDVAGPVAAASCVET-------AEPSLR----EGLEGIYRDFELLGLRPPTLAMVDVADAESPFRRSNFYDAIITDPPYSIKESAVVKTADEKVHTATLAEHAEVRMNDLTPPRTGSRRRRLDFTGRSGWVSGDGIVAIAHANNVVGEVVWSLLSLARFSLKPGGRLCFFLPLRGAEARLDTIPAAVANKLVETNTGGE--RLIHVYFTKQRMKSPNMCRWLVVLEKEL 1356
            NS++R+RIIED CPP A N+PR VR+R   + A +      FYICRELQ+G AVG  G  M T C RRP RG+L  LALN+RR RG TAIEPE+AL+MANLA+VRPGSRVLDPFCGS SLLLPAA MGA TWGSDV+GP  A+            AE  +R    E  E IY+DF+ LG+  PTL   DV D ESP RR  FYDAI+TDPPY+IK   V  +    + T T   H E     + P               S W +G G  A A A ++VG+V+WSLL+LAR SLKPGGRLCFFLPLRGAEARLD +P  +  K+ + +  G+  RL  VY TKQRM SPNMCRWL+VLEKEL
Sbjct:  175 NSDIRVRIIEDLCPPPAENLPRDVRERAEASAAARRRRENTFYICRELQLGAAVGVGGTVMATGCGRRPTRGVLGALALNRRRCRGPTAIEPEVALIMANLAKVRPGSRVLDPFCGSCSLLLPAAHMGAKTWGSDVSGPATASEEAGALVGGDTGAEGGVRQADREDFEQIYQDFQALGVAAPTLVAADVGDEESPVRRPEFYDAIVTDPPYNIKAKVVTTS----LATKTSGRHEEA--GSVLPAAGIDSTAHAASEAGSEWKAGGGARAEASAKDLVGKVIWSLLALARSSLKPGGRLCFFLPLRGAEARLDRLPTGLLEKMSQGDLAGDPARLAVVYTTKQRMTSPNMCRWLIVLEKEL 530          
BLAST of mRNA_P-canaliculata_contig10308.448.1 vs. uniprot
Match: A0A7S2JLU4_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JLU4_9EUKA)

HSP 1 Score: 103 bits (256), Expect = 1.040e-20
Identity = 105/340 (30.88%), Postives = 136/340 (40.00%), Query Frame = 1
Query:  415 ATAGKATWFYICRE---------LQIGPAVGSGVDMGTTCRRPVRGILNTLALNKRRSRGSTAIEPEIALVMANLARVRPGSRVLDPFCGSLSLLLPAAFMGAMTW-GSDVAGPVAAASCVETAEPSLREGLEGIYRDFELLGLRPPTLAMVDV-ADAESPFRRSN-FYDAIITDPPYSIKESAVVKTADEKVHTATLAEHAEVRMNDLTPPRTGSRRRRLDFTGRSGWVSGDGIVAIAHANNVVGEVVWSLLSLARFSLKPGGRLCFFLPLRGAEARLDTI--------PAA-------VANKLVETNTGGERLIHVYFTKQRMKSPN-MCRWLVVLEK 1350
            A  G A W  +  +         +  GPA G G       RR   G L   AL +RR   +TA+EPEIA +MAN AR+   SRVLDP CGS  LLL AA +GA    G D+                 R   EG+  DF  + L  P L   DV A   +P   S+  YDAI+ DPPY+++    V+ + +   T  LA        DLT                                        ++L LA  +L PGGRL  F+P RGAE  L           PAA       V  +L   +T   R      T +  + P    RWL+ LE+
Sbjct:    9 ARPGDAAWVLLREQYGRVHLGWRVASGPAAGPGAPGVAQGRRCYTGWLGQYALKQRRHAAATAMEPEIAFLMANWARISAASRVLDPTCGSCGLLLSAAVLGATQLVGIDMN----------------RSAFEGVAADFSRMALPAPKLVCGDVLAPRHTPELASDALYDAIVCDPPYNLQAPVFVQGSAQ---TGPLA------AADLTS---------------------------------------AVLGLAARALTPGGRLVLFVPARGAEVSLTLEELLARRMPPAAHRPALRIVYGRLQRFSTRRSRRAGSSATPRASRGPGAFARWLICLER 284          
BLAST of mRNA_P-canaliculata_contig10308.448.1 vs. uniprot
Match: A0A7S4C3T9_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C3T9_CHRCT)

HSP 1 Score: 105 bits (263), Expect = 3.630e-20
Identity = 77/228 (33.77%), Postives = 110/228 (48.25%), Query Frame = 1
Query:  520 RGILNTLALNKRRSRGSTAIEPEIALVMANLARVRPGSRVLDPFCGSLSLLLPAAFMGAMTWGSDVAGPVAAASCVETAEPSLREGL--EGIYRDFELLGLRPPTLAMV--DVADAESPFRRSNFYDAIITDPPYSIKESAVVKTADEKVHTATLAEHAEVRMNDLTPPRTGSRRRRLDFTGRSGWVSGDGIVAIAHANNVVGEVVWSLLSLARFSLKPGGRLCFFLP 1191
            R ++    L +R   G+T+++ E+ LVMAN+A VRP   V DPFCG+   L+PAA  GA   G+D+  PV        + PS R     + I R     GL PP LA+V  D +  +S F R   ++AIITDPPY I+E + V  AD+ + +  L+E    ++ D  P R                           A    G+++  L   A ++L  GGRL F LP
Sbjct:  227 RALVGRYELKRRNYIGTTSLDAELGLVMANMAGVRPNDLVADPFCGTAGTLIPAAHFGARVVGADLFLPVLRGQVRSRSGPSKRTQAAEQSIGRSLAQYGL-PPPLALVHADASADKSAFARRRIFEAIITDPPYGIRERSAV-LADDALESRELSEE---QLKDHVPKR---------------------------AQAAFGQILKDLFEFATYTLVDGGRLVFLLP 422          
BLAST of mRNA_P-canaliculata_contig10308.448.1 vs. uniprot
Match: A0A7S4FBA9_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FBA9_CHRCT)

HSP 1 Score: 103 bits (258), Expect = 4.580e-20
Identity = 76/220 (34.55%), Postives = 107/220 (48.64%), Query Frame = 1
Query:  544 LNKRRSRGSTAIEPEIALVMANLARVRPGSRVLDPFCGSLSLLLPAAFMGAMTWGSDVAGPVAAASCVETAEPSLREGL--EGIYRDFELLGLRPPTLAMV--DVADAESPFRRSNFYDAIITDPPYSIKESAVVKTADEKVHTATLAEHAEVRMNDLTPPRTGSRRRRLDFTGRSGWVSGDGIVAIAHANNVVGEVVWSLLSLARFSLKPGGRLCFFLP 1191
            L +R   G+T+++ E+ LVMAN+A VRP   V DPFCG+   L+PAA  GA   G+D+  PV        + PS R     + I R     GL PP LA+V  D +  +S F R   ++AIITDPPY I+E + V  AD+ + +  L+E    ++ D  P R                           A    G+++  L   A ++L  GGRL F LP
Sbjct:   50 LKRRNYIGTTSLDAELGLVMANMAGVRPNDLVADPFCGTAGTLIPAAHFGARVVGADLFLPVLRGQVRSRSGPSKRTQAAEQSIGRSLAQYGL-PPPLALVHADASADKSAFARRRIFEAIITDPPYGIRERSAV-LADDALESRELSEE---QLKDHVPKR---------------------------AQAAFGQILKDLFEFATYTLVDGGRLVFLLP 237          
BLAST of mRNA_P-canaliculata_contig10308.448.1 vs. uniprot
Match: UPI001903AB17 (tRNA guanosine-2'-O-methyltransferase n=1 Tax=Cantharellus anzutake TaxID=1750568 RepID=UPI001903AB17)

HSP 1 Score: 101 bits (252), Expect = 3.400e-19
Identity = 83/259 (32.05%), Postives = 115/259 (44.40%), Query Frame = 1
Query:  520 RGILNTLALNKRRSRGSTAIEPEIALVMANLARVRPGSRVLDPFCGSLSLLLPAAFMGAMTWGSDVAGPVAAASCVETAEPSLREGLEGIYRDFELLGLRPPTLAMVDVADAESPFRRSNFYDAIITDPPYSIKESAVVKTADEKVHTATLAEHAEVRMNDLTPPRTGSRRRRLDFTGRSGWVSGDGIVAIAHANNVVGEVVWSLLSLARFSLKPGGRLCFFLPLRGAEARLDTIPAA-----VANKLVETNTGGERLI 1281
            R ++    + KR   G+T +E EI+L+MAN A+  PG  + DPF G+ S+L  AA  GA   GSD+ G                E + GIYR  +  GL      +      ++P+R  N +DAI+TDPPY ++  A  K    K  T T  + + V       P  G    RL    +   +S               ++   L+ LAR+ LKPGGRL FFLP    E     IP       V+N L +    G RLI
Sbjct:  177 RPLIRKFDVKKRAFFGNTTMEAEISLLMANQAQATPGKMIYDPFVGTGSMLYTAAQFGAYVLGSDLDG--------RQMRGKGMESVPGIYRAADQYGLSSRVFDLATFDVTKNPWRCGNIFDAIVTDPPYGVRAGA--KRLGRKDETRTPGDSSTV-------PGDGQANLRLHPPMKPYELS---------------DLTVDLIYLARYLLKPGGRLVFFLPTVNDEYDELDIPECKGMELVSNSLQDFGKWGRRLI 403          
BLAST of mRNA_P-canaliculata_contig10308.448.1 vs. uniprot
Match: A0A5J4Z2P4_PORPP (tRNA (Guanine(10)-N2)-methyltransferase-like n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2P4_PORPP)

HSP 1 Score: 99.8 bits (247), Expect = 6.010e-18
Identity = 103/319 (32.29%), Postives = 135/319 (42.32%), Query Frame = 1
Query:  424 GKATWFYICRELQIGPAVGSG--VDMGTTCRRPVRGILNTLALNKRRSRGSTAIEPEIALVMANLARVRPGSRVLDPFCGSLSLLLPAAFMGA-MTWGSDVAGPVAAASCVETAEPSLREGLEGIYRDFELLGLRPPTLAMVDVADAE--SPF-----RRSNFYDAIITDPPYSIKESAVVKTADEKVHTATLAEHAEVRMNDLTPPRTGSRRRRLDFTGRSGWVSGDGIVAIAHANNVVGEVVWSLLSLARFSLKPGGRLCFFLPLRGAEARLDTIPAAVANKLVETNTGGERLIHVYFTKQRMKSPNMCRWLVVLEK 1350
            G   +F   R L  GPA G    + +G   RR   GIL  LAL  R     T +EPE+AL+MA+LA   PG  VLDPFCGS SLLL A+  GA    G DV        C  +        ++G+  +FE LGLR P L   +V D    SP        +  Y+ II+DPPY ++       A  +VH   + +   V  ND +P                            +     G     L  +AR  L  GGRL  F+P     +  +  P  V +        G RLI  Y    ++ SP   RWLVV+EK
Sbjct:  795 GHDRFFAFGRLLCRGPAAGHQDVLGLGHRSRRARSGILAKLALKDRPFCAPTTMEPELALLMASLALASPGKTVLDPFCGSCSLLLAASVQGAEYVVGVDV-------ECGTS-------NVQGVVANFEQLGLRAPLLYEANVLDGRDRSPCFAAWAEPNTRYNCIISDPPYGMR-------AGVQVHDQDVNDDGPV-SNDESP---------------------------LYYQGAAGTATRRLCEIARDLLSVGGRLVCFVP-DWRTSLYEFAPDVVLHD-------GLRLIACY---PQVFSPTFRRWLVVIEK 1053          
BLAST of mRNA_P-canaliculata_contig10308.448.1 vs. uniprot
Match: A0A146IEJ6_MYCCL (RNA methylase n=2 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146IEJ6_MYCCL)

HSP 1 Score: 97.8 bits (242), Expect = 6.170e-18
Identity = 91/310 (29.35%), Postives = 133/310 (42.90%), Query Frame = 1
Query:  409 WEATAGKA----TWFYICRELQIGPAVGSGVDMGTTCRRPVRGILNTLALNKRRSRGSTAIEPEIALVMANLARVRPGSRVLDPFCGSLSLLLPAAFMGAMTWGSDVAGPVAAASCVETAEPSLREGLEGIYRDFELLGL--RPPTLAMVDVADAESPFRRSNFYDAIITDPPYSIKESAV----VKTADEKVHTATLAEHAEVRMNDLTPPRTGSRRRRLDFTGRSGWVSGDGIVAIAHANNVVGEVVWSLLSLARFSLKPGGRLCFFLPLRG-------AEARLDTIPAAVANKLVETNTGGERLIHV 1287
            +E T GKA    T     R++  G  +  G           R ++    + KR   G+T++E EI+L+MAN A   P   V DPFCG+ S+L P  + GA ++GSD+ G          A P       G+++  +  G+  R   L   DV   ++P+R  N +DAI+TDPPY ++  A      K   E+   A + EH     N L P    ++   L                          +   L+ LAR+ LKP GRL FFLP           ++ L    A VAN L +  + G RLI +
Sbjct:  144 YETTEGKAASPTTRDGQFRQVYFGRHIADG---------QARSLIRLFDVKKRSYYGNTSMEAEISLLMANQALAAPSKLVYDPFCGTGSMLYPVTYFGAQSYGSDIDGRQMRGKGGADAPP-------GVFKAAKQYGVVNRFVDLCTFDVT--QNPWRCGNLFDAIVTDPPYGVRAGAKRLGRKKELSEEKKLANI-EHQRSARNRLEPYIPPTKPYELS------------------------ALAIDLVLLARYLLKPQGRLVFFLPTVNENYEEVDVQSMLCEGMALVANSLQDFGSWGRRLITI 410          
BLAST of mRNA_P-canaliculata_contig10308.448.1 vs. uniprot
Match: A0A7S4NQG6_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NQG6_GUITH)

HSP 1 Score: 94.4 bits (233), Expect = 6.780e-18
Identity = 66/173 (38.15%), Postives = 98/173 (56.65%), Query Frame = 1
Query:  457 LQIGPAVGSG--VDMGTTCRRPVRGILNTLALNKRRSRGSTAIEPEIALVMANLARVRPGSRVLDPFCGSLSLLLPAAFM---GAMTWGSDVAGPVAAASCVETAEPSLREGLEGIYRDFELLGLRPPTL--AMVDVADAESPFRRSNFYDAIITDPPYSIKESAVVKTADEK 954
            LQ G AVG     ++  + RRP  GIL T + N+R+ + +TA+EPEI+L+MAN+A++R  + VLDPFCGS SLLL A  +       +G D  G +                LE I  DF    + PPT+  A ++    +S FRR  F +AIITDPPY +  + ++++ D++
Sbjct:   86 LQRGSAVGDEDLYNIAGSRRRPRAGILRTFSNNERKFKTATAMEPEISLLMANVAKIREDAIVLDPFCGSCSLLLAAGIILRGRCQLYGYDADGEIMGM-------------LEKISSDFAHHSIAPPTIRRAGIETLGQDSDFRRLKF-NAIITDPPYDMN-AQILESEDKR 243          
BLAST of mRNA_P-canaliculata_contig10308.448.1 vs. uniprot
Match: A0A165EC20_EXIGL (tRNA guanosine-2'-O-methyltransferase n=2 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165EC20_EXIGL)

HSP 1 Score: 97.4 bits (241), Expect = 9.580e-18
Identity = 85/266 (31.95%), Postives = 121/266 (45.49%), Query Frame = 1
Query:  520 RGILNTLALNKRRSRGSTAIEPEIALVMANLARVRPGSRVLDPFCGSLSLLLPAAFMGAMTWGSDVAGPVAAASCVETAEPSLREGLEGIYRDFELLGLRPPTLAMVDVADAESPFRRSNFYDAIITDPPYSIKESAVVKTADEKVHTATLAEHAEVRMNDLTPPRTGSRRRRLDFTGRSGWVSGDGIVAIAHANNV-------VGEVVWSLLSLARFSLKPGGRLCFFLPLRGAEARLDTIPAA-----VANKLVETNTGGERLI 1281
            R +++   + KR   G+T++E EI+L+MAN     PG  + DPF G+ S+L  AA  GA+ +GSD+ G        E  E     G+E   R + L G R    A  DV    +P+RR   +DAI+TDPPY ++  A  K    K               DLT  RT   R              DGI++    + +       + ++   L+  AR++L+PGGRL FFLP    E     IP       VAN   +  + G RLI
Sbjct:  178 RTLVHKFDVKKRAYFGNTSMEAEISLLMANQTLASPGKLMYDPFVGTGSMLYTAAHFGAIVFGSDIDGRQIRGRGTEKKETP---GVESAARQYGLAG-RLLGCATFDVT--RNPWRRGGLFDAIVTDPPYGVRAGA--KRLGRK---------------DLTKQRTSPVRLS------------DGILSHVKPDYIPPTRPYELADLARDLVRFARWALRPGGRLVFFLPTVTDEYAAVDIPTLEGMELVANSCQDFGSWGRRLI 408          
BLAST of mRNA_P-canaliculata_contig10308.448.1 vs. uniprot
Match: A0A6A4IPB9_9AGAR (RNA methylase n=1 Tax=Gymnopus androsaceus JB14 TaxID=1447944 RepID=A0A6A4IPB9_9AGAR)

HSP 1 Score: 95.5 bits (236), Expect = 3.640e-17
Identity = 77/280 (27.50%), Postives = 120/280 (42.86%), Query Frame = 1
Query:  520 RGILNTLALNKRRSRGSTAIEPEIALVMANLARVRPGSRVLDPFCGSLSLLLPAAFMGAMTWGSDVAGPVAAASCVETAEPSLREGLEGIYRDFELLGLRPPTLAMVDVADAESPFRRSNFYDAIITDPPYSIKESAVVKTADEKVHTATLAEHAEVRMN---DLTPPRTGSRRRRLDFTGRSGWVSGDGIVAIAHANNVVGEVVWSLLSLARFSLKPGGRLCFFLPL---RGAEARLDTIPA----AVANKLVETNTGGERLIHVY-FTKQRMKSPNMC 1326
            R ++    + KR   G+T++E EI+L+MAN     PG  + DPF G+ S+  P A+ GA   GSD+ G                +   G++R     G+    + +       +P+R    +DAI+TDPPY ++  A      +++    L  + E R+N   D  P    +R   L                          +   L+ LAR+ LKPGGRL FFLP    +  E  + T+       +AN L +  T G RL+ +   T ++   PN C
Sbjct:  179 RSLIQVFDVKKRSYYGNTSMEAEISLLMANQTLASPGKLIYDPFMGTGSMAYPVAYFGAQVMGSDIDG-----------RQMRGKATPGVFRAASQYGVSSRMIDICTFDVTNNPWRCGELFDAIVTDPPYGVRAGAKRLGRKKELDADRLTLYHEHRINPRPDDQPYIPPTRPYELS------------------------NLAVDLVLLARYLLKPGGRLVFFLPTVTDQYEEVDIYTMLCDGMEVIANSLQDFGTWGRRLVTIRKVTSRKYLPPNFC 423          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10308.448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G924_ECTSI7.130e-11255.25UPF0020 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2JLU4_9EUKA1.040e-2030.88Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S4C3T9_CHRCT3.630e-2033.77Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4FBA9_CHRCT4.580e-2034.55Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
UPI001903AB173.400e-1932.05tRNA guanosine-2'-O-methyltransferase n=1 Tax=Cant... [more]
A0A5J4Z2P4_PORPP6.010e-1832.29tRNA (Guanine(10)-N2)-methyltransferase-like n=1 T... [more]
A0A146IEJ6_MYCCL6.170e-1829.35RNA methylase n=2 Tax=Mycena chlorophos TaxID=6584... [more]
A0A7S4NQG6_GUITH6.780e-1838.15Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A165EC20_EXIGL9.580e-1831.95tRNA guanosine-2'-O-methyltransferase n=2 Tax=Exid... [more]
A0A6A4IPB9_9AGAR3.640e-1727.50RNA methylase n=1 Tax=Gymnopus androsaceus JB14 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10308contigP-canaliculata_contig10308:4375..7355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score299.3
Seed ortholog evalue2e-78
Seed eggNOG ortholog2880.D7G924
KEGG koko:K03178
KEGG Pathwayko04120,ko05012,map04120,map05012
EggNOG free text desc.tRNA (guanine-N2-)-methyltransferase activity
EggNOG OGsCOG1041@1,KOG2671@2759
EC6.2.1.45
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionRNA methylase
Ec32 orthologEc-15_002170.1
Exons3
Model size1924
Cds size882
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10308.448.1prot_P-canaliculata_contig10308.448.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10308 4867..6805 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815602.6721992-UTR-P-canaliculata_contig10308:4374..48661622815602.6721992-UTR-P-canaliculata_contig10308:4374..4866Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10308 4375..4866 +
1693494160.7232397-UTR-P-canaliculata_contig10308:4374..48661693494160.7232397-UTR-P-canaliculata_contig10308:4374..4866Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10308 4375..4866 +
1622815602.72969-UTR-P-canaliculata_contig10308:6805..73551622815602.72969-UTR-P-canaliculata_contig10308:6805..7355Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10308 6806..7355 +
1693494160.7654505-UTR-P-canaliculata_contig10308:6805..73551693494160.7654505-UTR-P-canaliculata_contig10308:6805..7355Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10308 6806..7355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815602.6894226-CDS-P-canaliculata_contig10308:4866..49921622815602.6894226-CDS-P-canaliculata_contig10308:4866..4992Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10308 4867..4992 +
1693494160.740623-CDS-P-canaliculata_contig10308:4866..49921693494160.740623-CDS-P-canaliculata_contig10308:4866..4992Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10308 4867..4992 +
1622815602.704362-CDS-P-canaliculata_contig10308:5197..54571622815602.704362-CDS-P-canaliculata_contig10308:5197..5457Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10308 5198..5457 +
1693494160.750615-CDS-P-canaliculata_contig10308:5197..54571693494160.750615-CDS-P-canaliculata_contig10308:5197..5457Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10308 5198..5457 +
1622815602.71691-CDS-P-canaliculata_contig10308:6309..68051622815602.71691-CDS-P-canaliculata_contig10308:6309..6805Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10308 6310..6805 +
1693494160.758141-CDS-P-canaliculata_contig10308:6309..68051693494160.758141-CDS-P-canaliculata_contig10308:6309..6805Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10308 6310..6805 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10308.448.1

>prot_P-canaliculata_contig10308.448.1 ID=prot_P-canaliculata_contig10308.448.1|Name=mRNA_P-canaliculata_contig10308.448.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=294bp
MGTTCRRPVRGILNTLALNKRRSRGSTAIEPEIALVMANLARVRPGSRVL
DPFCGSLSLLLPAAFMGAMTWGSDVAGPVAAASCVETAEPSLREGLEGIY
RDFELLGLRPPTLAMVDVADAESPFRRSNFYDAIITDPPYSIKESAVVKT
ADEKVHTATLAEHAEVRMNDLTPPRTGSRRRRLDFTGRSGWVSGDGIVAI
AHANNVVGEVVWSLLSLARFSLKPGGRLCFFLPLRGAEARLDTIPAAVAN
KLVETNTGGERLIHVYFTKQRMKSPNMCRWLVVLEKELRNSAG*
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mRNA from alignment at P-canaliculata_contig10308:4375..7355+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10308.448.1 ID=mRNA_P-canaliculata_contig10308.448.1|Name=mRNA_P-canaliculata_contig10308.448.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2981bp|location=Sequence derived from alignment at P-canaliculata_contig10308:4375..7355+ (Pelvetia canaliculata dioecious)
TGAAAGGTATGTCCCCCTTAGAGAGCGTTTCTTCACGAGGGGATCGGGTG CCTAAAAACGGTGTACATTCTACTGCCAATTCCCGACGCAAGGGACTTGA AACTTTCGAAGGTCGGTAGTTCATTCCGTATGTTGTGACGGGTGGATCTA TCTATAGGAGACGGAGGAATGGATCAGTATTTATCTTCCTCGGGAACCTT TCCTTGCTCCCATTCAATCAGGAAATATTTTTCTTGAATCTGGGAGCACG GCTTGTGACGAGCTAAGCACCGTGTCTGCATATCGCGTACGCATCTCCGC CCTCACGCAAGGACCACGTCCCCCAACAGCGAAGTTCGCATCCGGATCAT CGAGGACACATGTCCCCCCGCTGCCGGTAACATACCCCGCCACGTGCGAA AACGGCCTTGGGAAGCGACCGCCGGCAAGGCGACCTGGTTTTATATTTGT CGAGAGCTGCAGATCGGGCCTGCGGTCGGGTCGGGGGTGGATATGGGGAC GACCTGCCGGCGTCCAGTCAGGGGCATCTTGAACACGTTGGCGCTCAACA AGCGGCGGAGCCGCGGGAGTACAGCAATCGAGCCGGAGATCGCGCTAGTG ATGGCCAATCTCGCGAGAGTAAGTGTGACTTTCTGTTTTTCTATTGTCTT TATGTTGTCTCTCTGTTGTCTTTCTGTTGACTTTCTGTTGACGTTGAGCC TTTGGGGCGAGGGGAGGGTCTTCAAGGGTGAATTCCAGAAGCATTGGCCT ACGACGGCGCACACGTCACAAGACAACCACCCTTGAGGTTCGTGTTTGCA AACTTTTGTGTGTGGACTGGCAGGTCCGGCCGGGGTCGCGGGTGTTGGAC CCGTTCTGCGGCTCGTTGTCGCTCCTCCTCCCCGCCGCGTTCATGGGGGC GATGACTTGGGGCTCGGATGTAGCCGGTCCGGTAGCGGCAGCCTCCTGCG TTGAAACGGCCGAACCCTCGCTGCGGGAAGGTCTGGAAGGCATTTACAGA GACTTTGAGCTTCTCGGTCTACGCCCGCCCACGCTGGCGATGGTGGACGT TGCCGACGCAGAATCTCCCTTCCGAAGATCAAAGTAAGTGGTTAATCTTT TGTGCGGGTGCGCTGTTACACAATGAACCGGTGTGTCGACCGTGGGGACC ACGTCCAATATTCTTCACCCAATGCCCACTTCATACCAATAGTGAGTGTG GGGAAAAAGAGGCGCACATTGACTGACTGGACCATGGTGAAACCTGAAAA GGCAGCATCCGTTCCTGGAACTATCTTGAGGACTACTGGCCCTGTGCTGG CGGACTCTCGACAGTGGACGTCATCGGTACTCAATTGCGTGATGTGATAA ACTCGGGACTGACCCAATATCGGATGGAGGTATAAATAAATGGACGACGT CGCGGAAATCGGGGGGGATTCCGTGAGTAAGCACCAGATTCAGCCTGTGT ACTAAGAATGAGCAGGCTGACGCGGGACGGGCCGGCGGAACCCGTCTCGC GAGACCAAGTTCTCAGGCGCGAACAGGGACAGGGAGATAATCATTTTCCC TGTTCAGCTGACCACGAGCAGGATTGGCAACCTTACCCGGTCGATCCGTA TTCCGCTTTAAGTGATGACAATACATACGTATATACCCGAAGAGTCGATA TGCCCTTGGCGAGAAGCTCTCAGGAGGCCGTCAGGAGGTTATCGTAAATA TCACGTTTAAGTTTAGAGTTCGGACTGATGTACTTTTTGGTCGAAAGAAC GATCTACACAAAAAAAAGGTTACTGTACTCAATACACTTAATCCCTCTTC AGGTATTAATTACCAATAGTGTATACTCTCAGCGACCTTCGTTTCAGTCC TGGCAGCAATAACGGCTTATTCAAACCTTTGGCTTGTCTATCTAACCTGC CCTGTACACCCATCGCCCCTGGTTCGCGCACGTAGTTTCTACGACGCAAT TATCACCGATCCGCCGTACAGTATCAAGGAAAGCGCCGTCGTGAAGACAG CAGATGAAAAGGTCCACACCGCAACCCTAGCAGAGCACGCCGAAGTGCGT ATGAACGATCTCACGCCGCCGAGAACAGGCAGCCGTCGACGTCGTTTGGA CTTCACTGGTCGTTCAGGGTGGGTGTCGGGCGATGGCATCGTGGCGATAG CGCACGCGAACAATGTTGTTGGCGAGGTAGTCTGGTCCCTTTTGTCGCTT GCAAGGTTCTCCCTCAAGCCCGGGGGGCGGCTTTGTTTTTTCTTGCCCCT GAGGGGCGCAGAAGCTCGGCTCGATACGATTCCGGCCGCCGTGGCGAATA AACTGGTTGAAACCAATACCGGGGGAGAACGCCTGATACATGTATACTTC ACCAAGCAGCGCATGAAGAGCCCGAACATGTGCCGTTGGCTGGTGGTCCT AGAGAAGGAGCTGCGGAATAGTGCAGGCTAGGTAGGGTGGCGCGTGAGAA ATGGACAAGAAGCCTCCACCACGCTGCCTGCCTTGGACACCCGCGCCAGG AAACTAAGGGGAGGATTGTGCTTCCGAACGGAGCACTGGTGTAGGTGACT TGGGGTGGGGTAAAATTATTGACGGAGATGCGGGTAGTAAAAAAAAAAGT AAGGCAAAAAGAGTAGCGCCTTTTTACTTGTAGCCGAAGTCGACCGACGA CTCCCTACCGCGGCTGGCACCGACCGCCCGGGCCGCCCCAAGCCGCATGA AGTGCGCGTTGCTCTTGAACTCCATATAGGTGGTGAAGAGGACGTGGAGA CTCTCCACGATGTTGTCGTAAACGGGAATGTCCATGATGGCGCAAATCTG CGATTGTTCACATCGCGAAAGTAGCCCAAACATCGGTTCTCTTACACCCG AGAAAGGAATGGATTTCAAATTGTTGCTCGTTCGCATTCGCGAGTAACTG ATGTCGGGGCACGTGTTTTCCCTTGAGATCGAACCGAGGCAGACAGGTTC GAGCGTCTAGGGACCCGACCCCGTGATGGGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10308:4375..7355+

>mRNA_P-canaliculata_contig10308.448.1 ID=mRNA_P-canaliculata_contig10308.448.1|Name=mRNA_P-canaliculata_contig10308.448.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1764bp|location=Sequence derived from alignment at P-canaliculata_contig10308:4375..7355+ (Pelvetia canaliculata dioecious)
ATGGGGACGACCTGCCGGCGTCCAGTCAGGGGCATCTTGAACACGTTGGC
GCTCAACAAGCGGCGGAGCCGCGGGAGTACAGCAATCGAGCCGGAGATCG
CGCTAGTGATGGCCAATCTCGCGAGAATGGGGACGACCTGCCGGCGTCCA
GTCAGGGGCATCTTGAACACGTTGGCGCTCAACAAGCGGCGGAGCCGCGG
GAGTACAGCAATCGAGCCGGAGATCGCGCTAGTGATGGCCAATCTCGCGA
GAGTCCGGCCGGGGTCGCGGGTGTTGGACCCGTTCTGCGGCTCGTTGTCG
CTCCTCCTCCCCGCCGCGTTCATGGGGGCGATGACTTGGGGCTCGGATGT
AGCCGGTCCGGTAGCGGCAGCCTCCTGCGTTGAAACGGCCGAACCCTCGC
TGCGGGAAGGTCTGGAAGGCATTTACAGAGACTTTGAGCTTCTCGGTCTA
CGCCCGCCCACGCTGGCGATGGTGGACGTTGCCGACGCAGAATCTCCCTT
CCGAAGATCAAAGTCCGGCCGGGGTCGCGGGTGTTGGACCCGTTCTGCGG
CTCGTTGTCGCTCCTCCTCCCCGCCGCGTTCATGGGGGCGATGACTTGGG
GCTCGGATGTAGCCGGTCCGGTAGCGGCAGCCTCCTGCGTTGAAACGGCC
GAACCCTCGCTGCGGGAAGGTCTGGAAGGCATTTACAGAGACTTTGAGCT
TCTCGGTCTACGCCCGCCCACGCTGGCGATGGTGGACGTTGCCGACGCAG
AATCTCCCTTCCGAAGATCAAATTTCTACGACGCAATTATCACCGATCCG
CCGTACAGTATCAAGGAAAGCGCCGTCGTGAAGACAGCAGATGAAAAGGT
CCACACCGCAACCCTAGCAGAGCACGCCGAAGTGCGTATGAACGATCTCA
CGCCGCCGAGAACAGGCAGCCGTCGACGTCGTTTGGACTTCACTGGTCGT
TCAGGGTGGGTGTCGGGCGATGGCATCGTGGCGATAGCGCACGCGAACAA
TGTTGTTGGCGAGGTAGTCTGGTCCCTTTTGTCGCTTGCAAGGTTCTCCC
TCAAGCCCGGGGGGCGGCTTTGTTTTTTCTTGCCCCTGAGGGGCGCAGAA
GCTCGGCTCGATACGATTCCGGCCGCCGTGGCGAATAAACTGGTTGAAAC
CAATACCGGGGGAGAACGCCTGATACATGTATACTTCACCAAGCAGCGCA
TGAAGAGCCCGAACATGTGCCGTTGGCTGGTGGTCCTAGAGAAGGAGCTG
CGGAATAGTGCAGGCTAGTTTCTACGACGCAATTATCACCGATCCGCCGT
ACAGTATCAAGGAAAGCGCCGTCGTGAAGACAGCAGATGAAAAGGTCCAC
ACCGCAACCCTAGCAGAGCACGCCGAAGTGCGTATGAACGATCTCACGCC
GCCGAGAACAGGCAGCCGTCGACGTCGTTTGGACTTCACTGGTCGTTCAG
GGTGGGTGTCGGGCGATGGCATCGTGGCGATAGCGCACGCGAACAATGTT
GTTGGCGAGGTAGTCTGGTCCCTTTTGTCGCTTGCAAGGTTCTCCCTCAA
GCCCGGGGGGCGGCTTTGTTTTTTCTTGCCCCTGAGGGGCGCAGAAGCTC
GGCTCGATACGATTCCGGCCGCCGTGGCGAATAAACTGGTTGAAACCAAT
ACCGGGGGAGAACGCCTGATACATGTATACTTCACCAAGCAGCGCATGAA
GAGCCCGAACATGTGCCGTTGGCTGGTGGTCCTAGAGAAGGAGCTGCGGA
ATAGTGCAGGCTAG
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