mRNA_P-canaliculata_contig10308.448.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10308.448.1 vs. uniprot
Match: D7G924_ECTSI (UPF0020 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G924_ECTSI) HSP 1 Score: 355 bits (912), Expect = 7.130e-112 Identity = 200/362 (55.25%), Postives = 237/362 (65.47%), Query Frame = 1
Query: 325 NSEVRIRIIEDTCPPAAGNIPRHVRKRPWEATAGKA---TWFYICRELQIGPAVG-SGVDMGTTC-RRPVRGILNTLALNKRRSRGSTAIEPEIALVMANLARVRPGSRVLDPFCGSLSLLLPAAFMGAMTWGSDVAGPVAAASCVET-------AEPSLR----EGLEGIYRDFELLGLRPPTLAMVDVADAESPFRRSNFYDAIITDPPYSIKESAVVKTADEKVHTATLAEHAEVRMNDLTPPRTGSRRRRLDFTGRSGWVSGDGIVAIAHANNVVGEVVWSLLSLARFSLKPGGRLCFFLPLRGAEARLDTIPAAVANKLVETNTGGE--RLIHVYFTKQRMKSPNMCRWLVVLEKEL 1356
NS++R+RIIED CPP A N+PR VR+R + A + FYICRELQ+G AVG G M T C RRP RG+L LALN+RR RG TAIEPE+AL+MANLA+VRPGSRVLDPFCGS SLLLPAA MGA TWGSDV+GP A+ AE +R E E IY+DF+ LG+ PTL DV D ESP RR FYDAI+TDPPY+IK V + + T T H E + P S W +G G A A A ++VG+V+WSLL+LAR SLKPGGRLCFFLPLRGAEARLD +P + K+ + + G+ RL VY TKQRM SPNMCRWL+VLEKEL
Sbjct: 175 NSDIRVRIIEDLCPPPAENLPRDVRERAEASAAARRRRENTFYICRELQLGAAVGVGGTVMATGCGRRPTRGVLGALALNRRRCRGPTAIEPEVALIMANLAKVRPGSRVLDPFCGSCSLLLPAAHMGAKTWGSDVSGPATASEEAGALVGGDTGAEGGVRQADREDFEQIYQDFQALGVAAPTLVAADVGDEESPVRRPEFYDAIVTDPPYNIKAKVVTTS----LATKTSGRHEEA--GSVLPAAGIDSTAHAASEAGSEWKAGGGARAEASAKDLVGKVIWSLLALARSSLKPGGRLCFFLPLRGAEARLDRLPTGLLEKMSQGDLAGDPARLAVVYTTKQRMTSPNMCRWLIVLEKEL 530
BLAST of mRNA_P-canaliculata_contig10308.448.1 vs. uniprot
Match: A0A7S2JLU4_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JLU4_9EUKA) HSP 1 Score: 103 bits (256), Expect = 1.040e-20 Identity = 105/340 (30.88%), Postives = 136/340 (40.00%), Query Frame = 1
Query: 415 ATAGKATWFYICRE---------LQIGPAVGSGVDMGTTCRRPVRGILNTLALNKRRSRGSTAIEPEIALVMANLARVRPGSRVLDPFCGSLSLLLPAAFMGAMTW-GSDVAGPVAAASCVETAEPSLREGLEGIYRDFELLGLRPPTLAMVDV-ADAESPFRRSN-FYDAIITDPPYSIKESAVVKTADEKVHTATLAEHAEVRMNDLTPPRTGSRRRRLDFTGRSGWVSGDGIVAIAHANNVVGEVVWSLLSLARFSLKPGGRLCFFLPLRGAEARLDTI--------PAA-------VANKLVETNTGGERLIHVYFTKQRMKSPN-MCRWLVVLEK 1350
A G A W + + + GPA G G RR G L AL +RR +TA+EPEIA +MAN AR+ SRVLDP CGS LLL AA +GA G D+ R EG+ DF + L P L DV A +P S+ YDAI+ DPPY+++ V+ + + T LA DLT ++L LA +L PGGRL F+P RGAE L PAA V +L +T R T + + P RWL+ LE+
Sbjct: 9 ARPGDAAWVLLREQYGRVHLGWRVASGPAAGPGAPGVAQGRRCYTGWLGQYALKQRRHAAATAMEPEIAFLMANWARISAASRVLDPTCGSCGLLLSAAVLGATQLVGIDMN----------------RSAFEGVAADFSRMALPAPKLVCGDVLAPRHTPELASDALYDAIVCDPPYNLQAPVFVQGSAQ---TGPLA------AADLTS---------------------------------------AVLGLAARALTPGGRLVLFVPARGAEVSLTLEELLARRMPPAAHRPALRIVYGRLQRFSTRRSRRAGSSATPRASRGPGAFARWLICLER 284
BLAST of mRNA_P-canaliculata_contig10308.448.1 vs. uniprot
Match: A0A7S4C3T9_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C3T9_CHRCT) HSP 1 Score: 105 bits (263), Expect = 3.630e-20 Identity = 77/228 (33.77%), Postives = 110/228 (48.25%), Query Frame = 1
Query: 520 RGILNTLALNKRRSRGSTAIEPEIALVMANLARVRPGSRVLDPFCGSLSLLLPAAFMGAMTWGSDVAGPVAAASCVETAEPSLREGL--EGIYRDFELLGLRPPTLAMV--DVADAESPFRRSNFYDAIITDPPYSIKESAVVKTADEKVHTATLAEHAEVRMNDLTPPRTGSRRRRLDFTGRSGWVSGDGIVAIAHANNVVGEVVWSLLSLARFSLKPGGRLCFFLP 1191
R ++ L +R G+T+++ E+ LVMAN+A VRP V DPFCG+ L+PAA GA G+D+ PV + PS R + I R GL PP LA+V D + +S F R ++AIITDPPY I+E + V AD+ + + L+E ++ D P R A G+++ L A ++L GGRL F LP
Sbjct: 227 RALVGRYELKRRNYIGTTSLDAELGLVMANMAGVRPNDLVADPFCGTAGTLIPAAHFGARVVGADLFLPVLRGQVRSRSGPSKRTQAAEQSIGRSLAQYGL-PPPLALVHADASADKSAFARRRIFEAIITDPPYGIRERSAV-LADDALESRELSEE---QLKDHVPKR---------------------------AQAAFGQILKDLFEFATYTLVDGGRLVFLLP 422
BLAST of mRNA_P-canaliculata_contig10308.448.1 vs. uniprot
Match: A0A7S4FBA9_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FBA9_CHRCT) HSP 1 Score: 103 bits (258), Expect = 4.580e-20 Identity = 76/220 (34.55%), Postives = 107/220 (48.64%), Query Frame = 1
Query: 544 LNKRRSRGSTAIEPEIALVMANLARVRPGSRVLDPFCGSLSLLLPAAFMGAMTWGSDVAGPVAAASCVETAEPSLREGL--EGIYRDFELLGLRPPTLAMV--DVADAESPFRRSNFYDAIITDPPYSIKESAVVKTADEKVHTATLAEHAEVRMNDLTPPRTGSRRRRLDFTGRSGWVSGDGIVAIAHANNVVGEVVWSLLSLARFSLKPGGRLCFFLP 1191
L +R G+T+++ E+ LVMAN+A VRP V DPFCG+ L+PAA GA G+D+ PV + PS R + I R GL PP LA+V D + +S F R ++AIITDPPY I+E + V AD+ + + L+E ++ D P R A G+++ L A ++L GGRL F LP
Sbjct: 50 LKRRNYIGTTSLDAELGLVMANMAGVRPNDLVADPFCGTAGTLIPAAHFGARVVGADLFLPVLRGQVRSRSGPSKRTQAAEQSIGRSLAQYGL-PPPLALVHADASADKSAFARRRIFEAIITDPPYGIRERSAV-LADDALESRELSEE---QLKDHVPKR---------------------------AQAAFGQILKDLFEFATYTLVDGGRLVFLLP 237
BLAST of mRNA_P-canaliculata_contig10308.448.1 vs. uniprot
Match: UPI001903AB17 (tRNA guanosine-2'-O-methyltransferase n=1 Tax=Cantharellus anzutake TaxID=1750568 RepID=UPI001903AB17) HSP 1 Score: 101 bits (252), Expect = 3.400e-19 Identity = 83/259 (32.05%), Postives = 115/259 (44.40%), Query Frame = 1
Query: 520 RGILNTLALNKRRSRGSTAIEPEIALVMANLARVRPGSRVLDPFCGSLSLLLPAAFMGAMTWGSDVAGPVAAASCVETAEPSLREGLEGIYRDFELLGLRPPTLAMVDVADAESPFRRSNFYDAIITDPPYSIKESAVVKTADEKVHTATLAEHAEVRMNDLTPPRTGSRRRRLDFTGRSGWVSGDGIVAIAHANNVVGEVVWSLLSLARFSLKPGGRLCFFLPLRGAEARLDTIPAA-----VANKLVETNTGGERLI 1281
R ++ + KR G+T +E EI+L+MAN A+ PG + DPF G+ S+L AA GA GSD+ G E + GIYR + GL + ++P+R N +DAI+TDPPY ++ A K K T T + + V P G RL + +S ++ L+ LAR+ LKPGGRL FFLP E IP V+N L + G RLI
Sbjct: 177 RPLIRKFDVKKRAFFGNTTMEAEISLLMANQAQATPGKMIYDPFVGTGSMLYTAAQFGAYVLGSDLDG--------RQMRGKGMESVPGIYRAADQYGLSSRVFDLATFDVTKNPWRCGNIFDAIVTDPPYGVRAGA--KRLGRKDETRTPGDSSTV-------PGDGQANLRLHPPMKPYELS---------------DLTVDLIYLARYLLKPGGRLVFFLPTVNDEYDELDIPECKGMELVSNSLQDFGKWGRRLI 403
BLAST of mRNA_P-canaliculata_contig10308.448.1 vs. uniprot
Match: A0A5J4Z2P4_PORPP (tRNA (Guanine(10)-N2)-methyltransferase-like n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2P4_PORPP) HSP 1 Score: 99.8 bits (247), Expect = 6.010e-18 Identity = 103/319 (32.29%), Postives = 135/319 (42.32%), Query Frame = 1
Query: 424 GKATWFYICRELQIGPAVGSG--VDMGTTCRRPVRGILNTLALNKRRSRGSTAIEPEIALVMANLARVRPGSRVLDPFCGSLSLLLPAAFMGA-MTWGSDVAGPVAAASCVETAEPSLREGLEGIYRDFELLGLRPPTLAMVDVADAE--SPF-----RRSNFYDAIITDPPYSIKESAVVKTADEKVHTATLAEHAEVRMNDLTPPRTGSRRRRLDFTGRSGWVSGDGIVAIAHANNVVGEVVWSLLSLARFSLKPGGRLCFFLPLRGAEARLDTIPAAVANKLVETNTGGERLIHVYFTKQRMKSPNMCRWLVVLEK 1350
G +F R L GPA G + +G RR GIL LAL R T +EPE+AL+MA+LA PG VLDPFCGS SLLL A+ GA G DV C + ++G+ +FE LGLR P L +V D SP + Y+ II+DPPY ++ A +VH + + V ND +P + G L +AR L GGRL F+P + + P V + G RLI Y ++ SP RWLVV+EK
Sbjct: 795 GHDRFFAFGRLLCRGPAAGHQDVLGLGHRSRRARSGILAKLALKDRPFCAPTTMEPELALLMASLALASPGKTVLDPFCGSCSLLLAASVQGAEYVVGVDV-------ECGTS-------NVQGVVANFEQLGLRAPLLYEANVLDGRDRSPCFAAWAEPNTRYNCIISDPPYGMR-------AGVQVHDQDVNDDGPV-SNDESP---------------------------LYYQGAAGTATRRLCEIARDLLSVGGRLVCFVP-DWRTSLYEFAPDVVLHD-------GLRLIACY---PQVFSPTFRRWLVVIEK 1053
BLAST of mRNA_P-canaliculata_contig10308.448.1 vs. uniprot
Match: A0A146IEJ6_MYCCL (RNA methylase n=2 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146IEJ6_MYCCL) HSP 1 Score: 97.8 bits (242), Expect = 6.170e-18 Identity = 91/310 (29.35%), Postives = 133/310 (42.90%), Query Frame = 1
Query: 409 WEATAGKA----TWFYICRELQIGPAVGSGVDMGTTCRRPVRGILNTLALNKRRSRGSTAIEPEIALVMANLARVRPGSRVLDPFCGSLSLLLPAAFMGAMTWGSDVAGPVAAASCVETAEPSLREGLEGIYRDFELLGL--RPPTLAMVDVADAESPFRRSNFYDAIITDPPYSIKESAV----VKTADEKVHTATLAEHAEVRMNDLTPPRTGSRRRRLDFTGRSGWVSGDGIVAIAHANNVVGEVVWSLLSLARFSLKPGGRLCFFLPLRG-------AEARLDTIPAAVANKLVETNTGGERLIHV 1287
+E T GKA T R++ G + G R ++ + KR G+T++E EI+L+MAN A P V DPFCG+ S+L P + GA ++GSD+ G A P G+++ + G+ R L DV ++P+R N +DAI+TDPPY ++ A K E+ A + EH N L P ++ L + L+ LAR+ LKP GRL FFLP ++ L A VAN L + + G RLI +
Sbjct: 144 YETTEGKAASPTTRDGQFRQVYFGRHIADG---------QARSLIRLFDVKKRSYYGNTSMEAEISLLMANQALAAPSKLVYDPFCGTGSMLYPVTYFGAQSYGSDIDGRQMRGKGGADAPP-------GVFKAAKQYGVVNRFVDLCTFDVT--QNPWRCGNLFDAIVTDPPYGVRAGAKRLGRKKELSEEKKLANI-EHQRSARNRLEPYIPPTKPYELS------------------------ALAIDLVLLARYLLKPQGRLVFFLPTVNENYEEVDVQSMLCEGMALVANSLQDFGSWGRRLITI 410
BLAST of mRNA_P-canaliculata_contig10308.448.1 vs. uniprot
Match: A0A7S4NQG6_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NQG6_GUITH) HSP 1 Score: 94.4 bits (233), Expect = 6.780e-18 Identity = 66/173 (38.15%), Postives = 98/173 (56.65%), Query Frame = 1
Query: 457 LQIGPAVGSG--VDMGTTCRRPVRGILNTLALNKRRSRGSTAIEPEIALVMANLARVRPGSRVLDPFCGSLSLLLPAAFM---GAMTWGSDVAGPVAAASCVETAEPSLREGLEGIYRDFELLGLRPPTL--AMVDVADAESPFRRSNFYDAIITDPPYSIKESAVVKTADEK 954
LQ G AVG ++ + RRP GIL T + N+R+ + +TA+EPEI+L+MAN+A++R + VLDPFCGS SLLL A + +G D G + LE I DF + PPT+ A ++ +S FRR F +AIITDPPY + + ++++ D++
Sbjct: 86 LQRGSAVGDEDLYNIAGSRRRPRAGILRTFSNNERKFKTATAMEPEISLLMANVAKIREDAIVLDPFCGSCSLLLAAGIILRGRCQLYGYDADGEIMGM-------------LEKISSDFAHHSIAPPTIRRAGIETLGQDSDFRRLKF-NAIITDPPYDMN-AQILESEDKR 243
BLAST of mRNA_P-canaliculata_contig10308.448.1 vs. uniprot
Match: A0A165EC20_EXIGL (tRNA guanosine-2'-O-methyltransferase n=2 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165EC20_EXIGL) HSP 1 Score: 97.4 bits (241), Expect = 9.580e-18 Identity = 85/266 (31.95%), Postives = 121/266 (45.49%), Query Frame = 1
Query: 520 RGILNTLALNKRRSRGSTAIEPEIALVMANLARVRPGSRVLDPFCGSLSLLLPAAFMGAMTWGSDVAGPVAAASCVETAEPSLREGLEGIYRDFELLGLRPPTLAMVDVADAESPFRRSNFYDAIITDPPYSIKESAVVKTADEKVHTATLAEHAEVRMNDLTPPRTGSRRRRLDFTGRSGWVSGDGIVAIAHANNV-------VGEVVWSLLSLARFSLKPGGRLCFFLPLRGAEARLDTIPAA-----VANKLVETNTGGERLI 1281
R +++ + KR G+T++E EI+L+MAN PG + DPF G+ S+L AA GA+ +GSD+ G E E G+E R + L G R A DV +P+RR +DAI+TDPPY ++ A K K DLT RT R DGI++ + + + ++ L+ AR++L+PGGRL FFLP E IP VAN + + G RLI
Sbjct: 178 RTLVHKFDVKKRAYFGNTSMEAEISLLMANQTLASPGKLMYDPFVGTGSMLYTAAHFGAIVFGSDIDGRQIRGRGTEKKETP---GVESAARQYGLAG-RLLGCATFDVT--RNPWRRGGLFDAIVTDPPYGVRAGA--KRLGRK---------------DLTKQRTSPVRLS------------DGILSHVKPDYIPPTRPYELADLARDLVRFARWALRPGGRLVFFLPTVTDEYAAVDIPTLEGMELVANSCQDFGSWGRRLI 408
BLAST of mRNA_P-canaliculata_contig10308.448.1 vs. uniprot
Match: A0A6A4IPB9_9AGAR (RNA methylase n=1 Tax=Gymnopus androsaceus JB14 TaxID=1447944 RepID=A0A6A4IPB9_9AGAR) HSP 1 Score: 95.5 bits (236), Expect = 3.640e-17 Identity = 77/280 (27.50%), Postives = 120/280 (42.86%), Query Frame = 1
Query: 520 RGILNTLALNKRRSRGSTAIEPEIALVMANLARVRPGSRVLDPFCGSLSLLLPAAFMGAMTWGSDVAGPVAAASCVETAEPSLREGLEGIYRDFELLGLRPPTLAMVDVADAESPFRRSNFYDAIITDPPYSIKESAVVKTADEKVHTATLAEHAEVRMN---DLTPPRTGSRRRRLDFTGRSGWVSGDGIVAIAHANNVVGEVVWSLLSLARFSLKPGGRLCFFLPL---RGAEARLDTIPA----AVANKLVETNTGGERLIHVY-FTKQRMKSPNMC 1326
R ++ + KR G+T++E EI+L+MAN PG + DPF G+ S+ P A+ GA GSD+ G + G++R G+ + + +P+R +DAI+TDPPY ++ A +++ L + E R+N D P +R L + L+ LAR+ LKPGGRL FFLP + E + T+ +AN L + T G RL+ + T ++ PN C
Sbjct: 179 RSLIQVFDVKKRSYYGNTSMEAEISLLMANQTLASPGKLIYDPFMGTGSMAYPVAYFGAQVMGSDIDG-----------RQMRGKATPGVFRAASQYGVSSRMIDICTFDVTNNPWRCGELFDAIVTDPPYGVRAGAKRLGRKKELDADRLTLYHEHRINPRPDDQPYIPPTRPYELS------------------------NLAVDLVLLARYLLKPGGRLVFFLPTVTDQYEEVDIYTMLCDGMEVIANSLQDFGTWGRRLVTIRKVTSRKYLPPNFC 423 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10308.448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10308.448.1 >prot_P-canaliculata_contig10308.448.1 ID=prot_P-canaliculata_contig10308.448.1|Name=mRNA_P-canaliculata_contig10308.448.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=294bp MGTTCRRPVRGILNTLALNKRRSRGSTAIEPEIALVMANLARVRPGSRVLback to top mRNA from alignment at P-canaliculata_contig10308:4375..7355+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10308.448.1 ID=mRNA_P-canaliculata_contig10308.448.1|Name=mRNA_P-canaliculata_contig10308.448.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2981bp|location=Sequence derived from alignment at P-canaliculata_contig10308:4375..7355+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10308:4375..7355+ >mRNA_P-canaliculata_contig10308.448.1 ID=mRNA_P-canaliculata_contig10308.448.1|Name=mRNA_P-canaliculata_contig10308.448.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1764bp|location=Sequence derived from alignment at P-canaliculata_contig10308:4375..7355+ (Pelvetia canaliculata dioecious)back to top |