mRNA_P-canaliculata_contig103066.445.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103066.445.1
Unique NamemRNA_P-canaliculata_contig103066.445.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig103066.445.1 vs. uniprot
Match: A0A7X0H8X3_9BACT (Uncharacterized protein n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0H8X3_9BACT)

HSP 1 Score: 99.8 bits (247), Expect = 5.210e-21
Identity = 98/291 (33.68%), Postives = 141/291 (48.45%), Query Frame = 1 
Query:    1 MPRARLKRRESLIKFARRAALEALDRTAARLEPARKADAAAAAAALREMRFLVQLLREPLGPVAYARDQAALDRLLRRLDPAAGRGLIEAAQTLSRLADTKPALSVPDECTPRALIA--AQRKGRGRR----EPARLRTLADVAELRLRARHWHLSETGFASLAAPLR----RACRLAASGRGAGAAA-----LAHHLHCLDRMWPEALAVPRESAHRMARAAQRIEALTALEVRLPESPDHDPLRARLTAHRDTLRKVVTENAA---RLGAETPAAFSRRLHNYWNLWRG 819
            MP   +KR + ++K  RR A   LD     L     AD AAA   L+ ++ L+   R PLG   + R+   + R L++L P A   L     TL+ +A+  P L V  +     LIA  A+ K R R+    +P +LR +AD+AELR+RAR+WHL + GF  L   LR    RA +L  +   A   A     LA  L   +R  P  L   R++   + R A++   L AL    P +  H+ L AR+    +TL +   + A    +L  ET  AF +R+  YW  WRG
Sbjct:    1 MPPLLIKRTDPIVKAVRRGATRQLDAAIESLTGNGSADPAAARRELQRLQALLHQFRRPLGGEVFNREHRQVVRCLKQLSPVADLRL----DTLADVANQDPKLDV--QALREQLIADTAEAKPRKRKKQGPDPKQLRLVADLAELRMRARYWHLPDGGFELLTPGLRLSYQRAAKLVQTNGPAADTADALDRLALQLQSFERACPVLLEPYRKALRALERNARKQAQLAALR---PATEQHEALLARID---ETLAQYGQDTARLRQQLFVETTPAFLKRMQGYWTAWRG 279
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BLAST of mRNA_P-canaliculata_contig103066.445.1 vs. uniprot
Match: UPI00167AE9E0 (CHAD domain-containing protein n=1 Tax=Lysobacter bugurensis TaxID=543356 RepID=UPI00167AE9E0)

HSP 1 Score: 54.3 bits (129), Expect = 7.480e-5
Identity = 86/295 (29.15%), Postives = 118/295 (40.00%), Query Frame = 1 
Query:   13 RLKRRESLIKFARRAALEALDRT--AARLEPARKADAAAAAAALREMRFLVQLLREPLGPVAYARDQAALDRLLRRLDPAAGRGLIEAAQTLSRLADTKPALSVPDECTPRALIAAQRKGRGR---REPARLRTLADVAELRLRARHWHLSETGFASLAAPLRRACRLAASGRGAGAAA------------LAHHLHCLDRM---WPEALAVPRESAHRMARAAQRIEALTALEVRLPESPDHDPLR---AR----LTAHRDTLRKVVTENAARLGAETPAAFSRRLHNYWNLWR 816
            R++R+ES+    RR ALE +D    +A  + A    A A     +++R L++L+R  L    Y R+Q A   + RRL P   R       TL RL D    L+  D  T R  + A R         E  R      + E R R   W L +T F+++   L R  R    G  A A+             + +H   LD +   W   L+   + A  +A           L   L    D D +R   AR    L A    L +     AARL AE P AF RR+  YW  WR
Sbjct:    4 RIRRKESIEIALRRIALEQIDAMLKSADSDGAPGDVAHAIRKRCKKLRALLRLVRGSLD--GYGREQRAARDVARRLAPV--RDAAVRLDTLDRLTDGHDGLNQSDAETLRNWLDASRTNALHALAHEEVRAEVRIALREQRERVASWTLDDTSFSAIRDGLSRTYRRGRDGARACASTPTPDGLHELRKRVKYHRFQLDLLRGLWRGPLSAASDEAGALAEVLGDHHDAAVLVDALRAHIDDDAIRDAAARAIPLLEARMRELERRALAPAARLFAEKPKAFERRMRAYWRAWR 294
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BLAST of mRNA_P-canaliculata_contig103066.445.1 vs. uniprot
Match: U5QQZ3_9CYAN (CHAD domain-containing protein n=1 Tax=Gloeobacter kilaueensis JS1 TaxID=1183438 RepID=U5QQZ3_9CYAN)

HSP 1 Score: 54.3 bits (129), Expect = 7.940e-5
Identity = 89/302 (29.47%), Postives = 125/302 (41.39%), Query Frame = 1 
Query:   49 RRAALEALDRTAARL--EPARKADAAAAAAA--LREMRFLVQLLREPLGPVAYARDQAALDRLLRRLDPAAGRGLIEA------AQTLSRLADTKPALSVPDECTPRALIA---AQRKGRGRREPARLRTLADVAE----LRLRARHWHLSETGFASLAAPLRRACRLAASGRGAGAAA------------------LAHHLHCLDRMWPEALAVPRESAHRMAR-AAQRIEALTALEVRLPESPDHDP-----LRARLTAHRDTLRKVVTENAARLGAETPAAFSRRLHNYWNLWRGEPQD 831
            RR  LE +D     L  E  R  DAA  AA    + +R L++L+R  LG   Y ++    DRLL+     AGR L +A       +TL++LA     L + D+     LIA   A+ + R    P     +A V      L+ R   W L   G+  + A    A  +   GR A A A                  L H L  L  +WP  L    + AHR+A       +    LE     +P+        L   +   R TL+++      +L AETP A+ RRLH YW  W+GE Q+
Sbjct:   16 RRIVLEQVDEALTHLADEFDRDPDAAVHAARKQFKRLRALLRLIRCELGSACYRQE----DRLLQE----AGRTLSQARDAHVLVKTLTKLARE---LDLSDD----GLIASLQARLEERSAAVPLDREVIAGVVVSLVGLQQRLEDWPLRHEGWPLIEAG---ALWVYRQGRRAFACAYDQPSAEHFHTWRKRVKDLWHQLELLTPLWPPVLKPLADEAHRLADYLGDEHDLSVLLETLQTFTPEITTGKGALLLETIEKQRQTLQQLARPLGLKLYAETPRAYRRRLHGYWQAWKGEAQE 299
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103066.445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7X0H8X3_9BACT5.210e-2133.68Uncharacterized protein n=1 Tax=Algisphaera agaril... [more]
UPI00167AE9E07.480e-529.15CHAD domain-containing protein n=1 Tax=Lysobacter ... [more]
U5QQZ3_9CYAN7.940e-529.47CHAD domain-containing protein n=1 Tax=Gloeobacter... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103066contigP-canaliculata_contig103066:111..968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size858
Cds size858
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815602.4275558-CDS-P-canaliculata_contig103066:110..9681622815602.4275558-CDS-P-canaliculata_contig103066:110..968Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103066 111..968 +
1693494160.5548131-CDS-P-canaliculata_contig103066:110..9681693494160.5548131-CDS-P-canaliculata_contig103066:110..968Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103066 111..968 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103066.445.1prot_P-canaliculata_contig103066.445.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103066 111..968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103066.445.1

>prot_P-canaliculata_contig103066.445.1 ID=prot_P-canaliculata_contig103066.445.1|Name=mRNA_P-canaliculata_contig103066.445.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=286bp
MPRARLKRRESLIKFARRAALEALDRTAARLEPARKADAAAAAAALREMR
FLVQLLREPLGPVAYARDQAALDRLLRRLDPAAGRGLIEAAQTLSRLADT
KPALSVPDECTPRALIAAQRKGRGRREPARLRTLADVAELRLRARHWHLS
ETGFASLAAPLRRACRLAASGRGAGAAALAHHLHCLDRMWPEALAVPRES
AHRMARAAQRIEALTALEVRLPESPDHDPLRARLTAHRDTLRKVVTENAA
RLGAETPAAFSRRLHNYWNLWRGEPQDPLPKADDPS
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mRNA from alignment at P-canaliculata_contig103066:111..968+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103066.445.1 ID=mRNA_P-canaliculata_contig103066.445.1|Name=mRNA_P-canaliculata_contig103066.445.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=858bp|location=Sequence derived from alignment at P-canaliculata_contig103066:111..968+ (Pelvetia canaliculata dioecious)
ATGCCGCGAGCCCGCCTCAAACGCCGAGAGTCGCTGATCAAGTTCGCCCG
CCGCGCCGCGCTGGAAGCGTTGGATCGGACCGCCGCCCGTCTGGAGCCGG
CCCGCAAGGCCGACGCCGCGGCCGCCGCCGCTGCGCTGCGCGAGATGCGG
TTTCTGGTGCAACTGCTGCGAGAGCCGCTGGGCCCGGTGGCGTACGCACG
CGACCAAGCCGCGCTCGACCGCCTGCTGCGACGCCTGGACCCCGCCGCGG
GCCGCGGGTTGATCGAAGCGGCCCAGACCCTGAGCCGGCTGGCCGACACC
AAACCGGCTCTTTCCGTGCCCGATGAATGCACCCCGCGGGCCCTGATCGC
CGCGCAGCGTAAAGGACGCGGGCGCCGCGAACCCGCCCGCCTGCGCACCC
TGGCCGACGTGGCGGAACTGCGCCTGCGGGCCCGTCACTGGCATCTTTCC
GAGACCGGTTTTGCCAGCCTGGCCGCGCCGCTGCGCCGGGCCTGTCGCCT
GGCCGCCTCCGGACGCGGTGCGGGCGCCGCCGCCCTTGCGCACCATCTGC
ACTGCCTGGACCGCATGTGGCCCGAAGCGCTGGCCGTGCCGCGCGAATCG
GCCCACCGCATGGCCCGCGCGGCCCAGCGCATCGAAGCACTCACCGCCCT
GGAAGTCCGGTTGCCCGAAAGCCCCGATCACGATCCGCTGCGCGCCCGGC
TGACGGCCCACCGCGACACGTTGCGCAAGGTGGTAACGGAAAACGCCGCG
CGGCTGGGCGCCGAAACGCCGGCGGCCTTCAGCCGGCGGCTGCACAACTA
CTGGAATCTCTGGCGCGGTGAGCCGCAGGACCCGCTCCCCAAGGCCGACG
ACCCTTCT
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Coding sequence (CDS) from alignment at P-canaliculata_contig103066:111..968+

>mRNA_P-canaliculata_contig103066.445.1 ID=mRNA_P-canaliculata_contig103066.445.1|Name=mRNA_P-canaliculata_contig103066.445.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1716bp|location=Sequence derived from alignment at P-canaliculata_contig103066:111..968+ (Pelvetia canaliculata dioecious)
ATGCCGCGAGCCCGCCTCAAACGCCGAGAGTCGCTGATCAAGTTCGCCCG
CCGCGCCGCGCTGGAAGCGTTGGATCGGACCGCCGCCCGTCTGGAGCCGG
CCCGCAAGGCCGACGCCGCGGCCGCCGCCGCTGCGCTGCGCGAGATGCGG
TTTCTGGTGCAACTGCTGCGAGAGCCGCTGGGCCCGGTGGCGTACGCACG
CGACCAAGCCGCGCTCGACCGCCTGCTGCGACGCCTGGACCCCGCCGCGG
GCCGCGGGTTGATCGAAGCGGCCCAGACCCTGAGCCGGCTGGCCGACACC
AAACCGGCTCTTTCCGTGCCCGATGAATGCACCCCGCGGGCCCTGATCGC
CGCGCAGCGTAAAGGACGCGGGCGCCGCGAACCCGCCCGCCTGCGCACCC
TGGCCGACGTGGCGGAACTGCGCCTGCGGGCCCGTCACTGGCATCTTTCC
GAGACCGGTTTTGCCAGCCTGGCCGCGCCGCTGCGCCGGGCCTGTCGCCT
GGCCGCCTCCGGACGCGGTGCGGGCGCCGCCGCCCTTGCGCACCATCTGC
ACTGCCTGGACCGCATGTGGCCCGAAGCGCTGGCCGTGCCGCGCGAATCG
GCCCACCGCATGGCCCGCGCGGCCCAGCGCATCGAAGCACTCACCGCCCT
GGAAGTCCGGTTGCCCGAAAGCCCCGATCACGATCCGCTGCGCGCCCGGC
TGACGGCCCACCGCGACACGTTGCGCAAGGTGGTAACGGAAAACGCCGCG
CGGCTGGGCGCCGAAACGCCGGCGGCCTTCAGCCGGCGGCTGCACAACTA
CTGGAATCTCTGGCGCGGTGAGCCGCAGGACCCGCTCCCCAAGGCCGACG
ACCCTTCTATGCCGCGAGCCCGCCTCAAACGCCGAGAGTCGCTGATCAAG
TTCGCCCGCCGCGCCGCGCTGGAAGCGTTGGATCGGACCGCCGCCCGTCT
GGAGCCGGCCCGCAAGGCCGACGCCGCGGCCGCCGCCGCTGCGCTGCGCG
AGATGCGGTTTCTGGTGCAACTGCTGCGAGAGCCGCTGGGCCCGGTGGCG
TACGCACGCGACCAAGCCGCGCTCGACCGCCTGCTGCGACGCCTGGACCC
CGCCGCGGGCCGCGGGTTGATCGAAGCGGCCCAGACCCTGAGCCGGCTGG
CCGACACCAAACCGGCTCTTTCCGTGCCCGATGAATGCACCCCGCGGGCC
CTGATCGCCGCGCAGCGTAAAGGACGCGGGCGCCGCGAACCCGCCCGCCT
GCGCACCCTGGCCGACGTGGCGGAACTGCGCCTGCGGGCCCGTCACTGGC
ATCTTTCCGAGACCGGTTTTGCCAGCCTGGCCGCGCCGCTGCGCCGGGCC
TGTCGCCTGGCCGCCTCCGGACGCGGTGCGGGCGCCGCCGCCCTTGCGCA
CCATCTGCACTGCCTGGACCGCATGTGGCCCGAAGCGCTGGCCGTGCCGC
GCGAATCGGCCCACCGCATGGCCCGCGCGGCCCAGCGCATCGAAGCACTC
ACCGCCCTGGAAGTCCGGTTGCCCGAAAGCCCCGATCACGATCCGCTGCG
CGCCCGGCTGACGGCCCACCGCGACACGTTGCGCAAGGTGGTAACGGAAA
ACGCCGCGCGGCTGGGCGCCGAAACGCCGGCGGCCTTCAGCCGGCGGCTG
CACAACTACTGGAATCTCTGGCGCGGTGAGCCGCAGGACCCGCTCCCCAA
GGCCGACGACCCTTCT
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