mRNA_P-canaliculata_contig102560.396.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102560.396.1
Unique NamemRNA_P-canaliculata_contig102560.396.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig102560.396.1 vs. uniprot
Match: A0A7Y3RMH4_9PROT (Peptidase A2 domain-containing protein n=1 Tax=Parvularcula mediterranea TaxID=2732508 RepID=A0A7Y3RMH4_9PROT)

HSP 1 Score: 120 bits (302), Expect = 2.720e-30
Identity = 59/144 (40.97%), Postives = 84/144 (58.33%), Query Frame = 1 
Query:    1 GAVSVPYRISETGRFLLDVSINDGPPRAFSVDTGATISVIYSDYAKASDLPVSDKTVFVRGLNSQGARPIIEDVSLAVGSQAFPLAFVVLLDSPKLGDEAIGLLGGDIFHGQIVLFDTASSRVTFVPRESVDRAAFAGWNRIRL 432
            GA+SVPY +SETG F++DV +N GPPR F VD+GA+ S IY     A  L  + ++V VRGL S G RP +E V+  +G+   P+  +V L       + +GL+G D+    +V+FD  +   TF+P  SV   +F GW    L
Sbjct:   33 GAISVPYELSETGLFVVDVGVNGGPPRPFFVDSGASTSAIYDRNLSAFGLSETGESVVVRGLVSTGERPKVEGVTFTIGALTTPVQSIVSLKPSTASFDVVGLIGLDVLSDYLVMFDVETKLATFIPASSVSPRSFVGWRLTEL 176
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BLAST of mRNA_P-canaliculata_contig102560.396.1 vs. uniprot
Match: UPI00199F5A11 (Uncharacterized protein n=2 Tax=Sphingomonas metalli TaxID=1779358 RepID=UPI00199F5A11)

HSP 1 Score: 63.2 bits (152), Expect = 5.620e-9
Identity = 41/123 (33.33%), Postives = 67/123 (54.47%), Query Frame = 1 
Query:   10 SVPYRISETGRFLLDVSINDGPPRAFSVDTGATISVIYSDYAKASDLPVSDKTVFVRGLNSQGARPIIEDVSLAVG-SQAFPLAFVVLLDSPKLGDEAIGLLGGDIFHGQIVLFDTASSRVTF 375
            + P  I+ +G  +  VS+++G P AF +DTGA  S +Y  +A++  LP + +   + G       P+ +  ++A+  +++ PL  V L D P   D A G+LG D+  G +V FD A  RV F
Sbjct:   27 AAPLTIAASGHPVAPVSVDEGRPAAFIIDTGAEGSAVYRWFAESRHLPEAGEER-LDGQTGAATLPMRQVQTMAIDRARSRPLQLVELADQPDRRDIA-GVLGLDVMRGSLVEFDFAHRRVLF 147
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BLAST of mRNA_P-canaliculata_contig102560.396.1 vs. uniprot
Match: A0A357LEK2_9PROT (Peptidase A2 domain-containing protein n=2 Tax=Parvularcula sp. TaxID=1979207 RepID=A0A357LEK2_9PROT)

HSP 1 Score: 59.3 bits (142), Expect = 1.290e-7
Identity = 40/136 (29.41%), Postives = 68/136 (50.00%), Query Frame = 1 
Query:   16 PYRISETGRFLLDVSINDGPPRAFSVDTGATISVIYSDYAKASDLPVSDKTVFVRGLNSQGARPIIEDVSLAVGSQAFPLAF----VVLLDSPKLGDEAIGLLGGDIFHGQIVLFDTASSRVTFVPRESVDRAAFA 411
            PY++S+ G   +DV++N   P  F VDTGAT+++++ ++A+ ++LP ++  V +R L+  GA+ I E   L   +    LA     VVL D         G++G DI     +  D     + F     + +A  A
Sbjct:   28 PYKLSDEGAITIDVTVNGRGPYPFIVDTGATLTIVFDNFARHANLPRAEG-VSLRVLSISGAK-IFEPYELGALAAGTVLAERQIGVVLPDWDAPRKTPAGIIGLDILENFAIALDAKKQTIAFYRGAGLPKALTA 161
[Close]
BLAST of mRNA_P-canaliculata_contig102560.396.1 vs. uniprot
Match: U5QGB6_9CYAN (Peptidase A2 domain-containing protein n=1 Tax=Gloeobacter kilaueensis JS1 TaxID=1183438 RepID=U5QGB6_9CYAN)

HSP 1 Score: 51.6 bits (122), Expect = 2.460e-5
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    4 AVSVPYRISETGRFLLDVSINDGPPRAFSVDTGATISVIYSDYAKASDLPVSDKTVFVRGLNS 192
            AVS+P+  S  G  ++   +N GPP AF VDTGA +SV+   Y +   LP+  + V + G+ S
Sbjct:   26 AVSIPFE-SVAGLIVVQARVNQGPPAAFIVDTGANVSVLSDRYVRERRLPLRSRRVQLSGIGS 87
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102560.396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7Y3RMH4_9PROT2.720e-3040.97Peptidase A2 domain-containing protein n=1 Tax=Par... [more]
UPI00199F5A115.620e-933.33Uncharacterized protein n=2 Tax=Sphingomonas metal... [more]
A0A357LEK2_9PROT1.290e-729.41Peptidase A2 domain-containing protein n=2 Tax=Par... [more]
U5QGB6_9CYAN2.460e-539.68Peptidase A2 domain-containing protein n=1 Tax=Glo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102560contigP-canaliculata_contig102560:562..993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.1778061-CDS-P-canaliculata_contig102560:561..9931622815599.1778061-CDS-P-canaliculata_contig102560:561..993Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102560 562..993 +
1693494158.7538211-CDS-P-canaliculata_contig102560:561..9931693494158.7538211-CDS-P-canaliculata_contig102560:561..993Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102560 562..993 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102560.396.1prot_P-canaliculata_contig102560.396.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102560 562..993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102560.396.1

>prot_P-canaliculata_contig102560.396.1 ID=prot_P-canaliculata_contig102560.396.1|Name=mRNA_P-canaliculata_contig102560.396.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=144bp
GAVSVPYRISETGRFLLDVSINDGPPRAFSVDTGATISVIYSDYAKASDL
PVSDKTVFVRGLNSQGARPIIEDVSLAVGSQAFPLAFVVLLDSPKLGDEA
IGLLGGDIFHGQIVLFDTASSRVTFVPRESVDRAAFAGWNRIRL
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mRNA from alignment at P-canaliculata_contig102560:562..993+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102560.396.1 ID=mRNA_P-canaliculata_contig102560.396.1|Name=mRNA_P-canaliculata_contig102560.396.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=432bp|location=Sequence derived from alignment at P-canaliculata_contig102560:562..993+ (Pelvetia canaliculata dioecious)
GGCGCGGTGAGCGTGCCATACCGCATCTCTGAAACGGGACGGTTCCTGCT
GGATGTGTCCATTAATGACGGTCCACCCCGGGCGTTTAGCGTCGATACGG
GCGCGACAATTTCTGTCATTTATAGCGACTATGCCAAGGCCAGCGATCTG
CCTGTCAGCGATAAAACGGTGTTTGTGCGCGGCCTCAACAGTCAAGGCGC
GCGCCCGATTATCGAAGATGTGTCGCTCGCCGTCGGGTCGCAGGCCTTCC
CGCTCGCGTTTGTCGTGTTGCTCGACTCGCCCAAACTGGGAGATGAAGCC
ATCGGGCTTTTGGGGGGCGATATTTTTCATGGTCAAATCGTTCTGTTTGA
TACCGCCTCGTCGCGTGTCACATTTGTGCCGCGCGAAAGCGTTGACCGCG
CGGCCTTCGCCGGATGGAATCGCATCCGCTTG
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Coding sequence (CDS) from alignment at P-canaliculata_contig102560:562..993+

>mRNA_P-canaliculata_contig102560.396.1 ID=mRNA_P-canaliculata_contig102560.396.1|Name=mRNA_P-canaliculata_contig102560.396.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at P-canaliculata_contig102560:562..993+ (Pelvetia canaliculata dioecious)
GGCGCGGTGAGCGTGCCATACCGCATCTCTGAAACGGGACGGTTCCTGCT
GGATGTGTCCATTAATGACGGTCCACCCCGGGCGTTTAGCGTCGATACGG
GCGCGACAATTTCTGTCATTTATAGCGACTATGCCAAGGCCAGCGATCTG
CCTGTCAGCGATAAAACGGTGTTTGTGCGCGGCCTCAACAGTCAAGGCGC
GCGCCCGATTATCGAAGATGTGTCGCTCGCCGTCGGGTCGCAGGCCTTCC
CGCTCGCGTTTGTCGTGTTGCTCGACTCGCCCAAACTGGGAGATGAAGCC
ATCGGGCTTTTGGGGGGCGATATTTTTCATGGTCAAATCGTTCTGTTTGA
TACCGCCTCGTCGCGTGTCACATTTGTGCCGCGCGAAAGCGTTGACCGCG
CGGCCTTCGCCGGATGGAATCGCATCCGCTTGGGCGCGGTGAGCGTGCCA
TACCGCATCTCTGAAACGGGACGGTTCCTGCTGGATGTGTCCATTAATGA
CGGTCCACCCCGGGCGTTTAGCGTCGATACGGGCGCGACAATTTCTGTCA
TTTATAGCGACTATGCCAAGGCCAGCGATCTGCCTGTCAGCGATAAAACG
GTGTTTGTGCGCGGCCTCAACAGTCAAGGCGCGCGCCCGATTATCGAAGA
TGTGTCGCTCGCCGTCGGGTCGCAGGCCTTCCCGCTCGCGTTTGTCGTGT
TGCTCGACTCGCCCAAACTGGGAGATGAAGCCATCGGGCTTTTGGGGGGC
GATATTTTTCATGGTCAAATCGTTCTGTTTGATACCGCCTCGTCGCGTGT
CACATTTGTGCCGCGCGAAAGCGTTGACCGCGCGGCCTTCGCCGGATGGA
ATCGCATCCGCTTG
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