mRNA_P-canaliculata_contig102533.393.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102533.393.1
Unique NamemRNA_P-canaliculata_contig102533.393.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig102533.393.1 vs. uniprot
Match: A0A7X0LLR1_9BACT (Uncharacterized protein n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0LLR1_9BACT)

HSP 1 Score: 114 bits (286), Expect = 3.280e-29
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:   10 KVRTKECVACYTPHVTIHRVKITYRKQWDFICDICWADRCVDNPHYEYGGLWMSGRVMPPESELYAEWLAKRKQR--SKGQP 249
            K RTK+CV CYTP  TIHRV++ +RKQW FICDICW  RCVDNPHYE+GG W++GR++ PES+L  E  AK K +  SK +P
Sbjct:  150 KPRTKQCVNCYTPCTTIHRVRLDHRKQWVFICDICWPSRCVDNPHYEFGGTWVTGRIVKPESQLRDEARAKHKDKKQSKDKP 231
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102533.393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7X0LLR1_9BACT3.280e-2962.20Uncharacterized protein n=1 Tax=Algisphaera agaril... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102533contigP-canaliculata_contig102533:68..331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.992849-CDS-P-canaliculata_contig102533:67..3311622815598.992849-CDS-P-canaliculata_contig102533:67..331Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102533 68..331 -
1693494158.6550658-CDS-P-canaliculata_contig102533:67..3311693494158.6550658-CDS-P-canaliculata_contig102533:67..331Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102533 68..331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102533.393.1prot_P-canaliculata_contig102533.393.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102533 68..331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102533.393.1

>prot_P-canaliculata_contig102533.393.1 ID=prot_P-canaliculata_contig102533.393.1|Name=mRNA_P-canaliculata_contig102533.393.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=88bp
KKRKVRTKECVACYTPHVTIHRVKITYRKQWDFICDICWADRCVDNPHYE
YGGLWMSGRVMPPESELYAEWLAKRKQRSKGQPSRSES
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mRNA from alignment at P-canaliculata_contig102533:68..331-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102533.393.1 ID=mRNA_P-canaliculata_contig102533.393.1|Name=mRNA_P-canaliculata_contig102533.393.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=264bp|location=Sequence derived from alignment at P-canaliculata_contig102533:68..331- (Pelvetia canaliculata dioecious)
AAGAAGCGCAAAGTCCGCACCAAGGAATGCGTGGCGTGCTACACCCCGCA
CGTCACGATCCACCGCGTGAAGATCACCTACCGCAAGCAGTGGGACTTCA
TCTGCGACATCTGCTGGGCCGATCGCTGCGTCGACAACCCGCACTACGAA
TACGGCGGGCTGTGGATGTCCGGCCGGGTGATGCCGCCCGAAAGCGAGCT
GTACGCCGAGTGGCTGGCGAAGCGTAAGCAGCGGTCGAAGGGACAACCAT
CGCGGTCGGAGTCA
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Coding sequence (CDS) from alignment at P-canaliculata_contig102533:68..331-

>mRNA_P-canaliculata_contig102533.393.1 ID=mRNA_P-canaliculata_contig102533.393.1|Name=mRNA_P-canaliculata_contig102533.393.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at P-canaliculata_contig102533:68..331- (Pelvetia canaliculata dioecious)
AAGAAGCGCAAAGTCCGCACCAAGGAATGCGTGGCGTGCTACACCCCGCA
CGTCACGATCCACCGCGTGAAGATCACCTACCGCAAGCAGTGGGACTTCA
TCTGCGACATCTGCTGGGCCGATCGCTGCGTCGACAACCCGCACTACGAA
TACGGCGGGCTGTGGATGTCCGGCCGGGTGATGCCGCCCGAAAGCGAGCT
GTACGCCGAGTGGCTGGCGAAGCGTAAGCAGCGGTCGAAGGGACAACCAT
CGCGGTCGGAGTCAAAGAAGCGCAAAGTCCGCACCAAGGAATGCGTGGCG
TGCTACACCCCGCACGTCACGATCCACCGCGTGAAGATCACCTACCGCAA
GCAGTGGGACTTCATCTGCGACATCTGCTGGGCCGATCGCTGCGTCGACA
ACCCGCACTACGAATACGGCGGGCTGTGGATGTCCGGCCGGGTGATGCCG
CCCGAAAGCGAGCTGTACGCCGAGTGGCTGGCGAAGCGTAAGCAGCGGTC
GAAGGGACAACCATCGCGGTCGGAGTCA
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