mRNA_P-canaliculata_contig10238.376.1 (mRNA) Pelvetia canaliculata dioecious
|
Overview
Homology
BLAST of mRNA_P-canaliculata_contig10238.376.1 vs. uniprot
Match: D7FWH7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWH7_ECTSI) HSP 1 Score: 140 bits (352), Expect = 7.930e-38 Identity = 67/78 (85.90%), Postives = 72/78 (92.31%), Query Frame = 1
Query: 106 ATAPKPSHETVKTRKKGISVACPIAYGSLAFLLERKKQSEYITHKWTLFVRGPNGEDISYFVSKVVFTLHPSFAEATR 339
A+A KP + K RKKG+SVACPIAYGSLAFLLERKKQSE++THKWTLFVRGPNGEDISYFVSKVVFTLHPSFAEATR
Sbjct: 2 ASASKPPADVPKIRKKGLSVACPIAYGSLAFLLERKKQSEFVTHKWTLFVRGPNGEDISYFVSKVVFTLHPSFAEATR 79
BLAST of mRNA_P-canaliculata_contig10238.376.1 vs. uniprot
Match: F0Y5R3_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5R3_AURAN) HSP 1 Score: 94.7 bits (234), Expect = 2.010e-21 Identity = 44/65 (67.69%), Postives = 50/65 (76.92%), Query Frame = 1
Query: 145 RKKGISVACPIAYGSLAFLLERKKQSEYITHKWTLFVRGPNGEDISYFVSKVVFTLHPSFAEATR 339
RKK +V CP+ YGS+AF L RK EY THKWTLFVRGP+GED+ YFV KVVF LHPSFA+ R
Sbjct: 1 RKKNTAVCCPLVYGSVAFWLGRKAD-EYHTHKWTLFVRGPHGEDLGYFVEKVVFKLHPSFAQPVR 64
BLAST of mRNA_P-canaliculata_contig10238.376.1 vs. uniprot
Match: A0A7S3ZZU1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZU1_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 8.140e-19 Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 1
Query: 145 RKKGISVACPIAYGSLAFLLERKKQSEYITHKWTLFVRGPNGEDISYFVSKVVFTLHPSFAEATR 339
R K +V CP+ YGSLAF L RK E+ THKWTLFVRGP+GED+ YFV KVVF LHPSFA+ R
Sbjct: 36 RVKDAAVCCPLVYGSLAFWLGRKAD-EFHTHKWTLFVRGPHGEDLGYFVEKVVFKLHPSFAQPVR 99
BLAST of mRNA_P-canaliculata_contig10238.376.1 vs. uniprot
Match: A0A6U3QEB4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3QEB4_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 1.780e-17 Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1
Query: 163 VACPIAYGSLAFLLERKKQSEYITHKWTLFVRGPNGEDISYFVSKVVFTLHPSFAEATR 339
+ CPI YGS+A L RK + TH+WTLFVRGPNGED++YF+SKVVFTLHPSFA+ R
Sbjct: 11 IHCPIVYGSIAHWLGRKADEAH-THRWTLFVRGPNGEDLTYFLSKVVFTLHPSFAQPVR 68
BLAST of mRNA_P-canaliculata_contig10238.376.1 vs. uniprot
Match: A0A7R9Y9J6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9J6_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 4.910e-16 Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 145 RKKGISVACPIAYGSLAFLLERKKQSEYITHKWTLFVRGPNGEDISYFVSKVVFTLHPSFAEATR 339
R+K V CPI YGS+AF + KK E+ TH+WTL+VRGPN ED+ YF+ KVVF LH SFA R
Sbjct: 12 RRKNTLVCCPIVYGSIAFWMG-KKADEHSTHQWTLYVRGPNDEDLGYFIDKVVFVLHHSFANPER 75
BLAST of mRNA_P-canaliculata_contig10238.376.1 vs. uniprot
Match: A0A835ZJW2_9STRA (Yeats family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJW2_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 7.420e-16 Identity = 41/69 (59.42%), Postives = 49/69 (71.01%), Query Frame = 1
Query: 145 RKKGISVACPIAYGSLAFLLERKKQSEYITHKWTLFVRGPNGEDISYFVSKVVFTLHPSFAEATRGKSE 351
R G++V CP+ +G +AFLL K E TH WTL+VRG +GEDISYFVSKVVFTLH SF TR +E
Sbjct: 11 RMSGVTVCCPVVFGCVAFLLG-KDGDELHTHCWTLYVRGAHGEDISYFVSKVVFTLHASFEPPTRELTE 78
BLAST of mRNA_P-canaliculata_contig10238.376.1 vs. uniprot
Match: A0A8J9X9H2_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X9H2_PHATR) HSP 1 Score: 78.2 bits (191), Expect = 1.900e-15 Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 1
Query: 145 RKKGISVAC-PIAYGSLAFLLERKKQSEYITHKWTLFVRGPNGEDISYFVSKVVFTLHPSFAEATRGKSE 351
R+ + AC PI YGS+AF L KK EY TH+WTL +RGPN ED+S +SKVVF LHPSF++ TR +E
Sbjct: 1 RRMEHTTACLPIVYGSVAFYLG-KKADEYNTHQWTLHLRGPNNEDLSPVISKVVFHLHPSFSQPTRELTE 69
BLAST of mRNA_P-canaliculata_contig10238.376.1 vs. uniprot
Match: A0A7S3GNA1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GNA1_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 8.910e-15 Identity = 37/57 (64.91%), Postives = 42/57 (73.68%), Query Frame = 1
Query: 169 CPIAYGSLAFLLERKKQSEYITHKWTLFVRGPNGEDISYFVSKVVFTLHPSFAEATR 339
CPI YGS+A L KK EY TH+W L++RGPN ED+S FV KV FTLHPSFAE R
Sbjct: 2 CPIVYGSVAVHLG-KKSEEYSTHRWKLYIRGPNNEDLSTFVEKVAFTLHPSFAEPVR 57
BLAST of mRNA_P-canaliculata_contig10238.376.1 vs. uniprot
Match: C1EEG0_MICCC (YEATS domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EEG0_MICCC) HSP 1 Score: 78.2 bits (191), Expect = 2.690e-14 Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 145 RKKGISVACPIAYGSLAFLLERKKQSEYITHKWTLFVRGPNGEDISYFVSKVVFTLHPSFAEATR 339
RKK + PI YG+ A+ L KK EY +HKWT+++RGP ED+S+ +SKVVF LHPSF EA R
Sbjct: 20 RKKDTELVVPICYGTCAYWLG-KKADEYHSHKWTVYLRGPENEDLSHVISKVVFNLHPSFKEAQR 83
BLAST of mRNA_P-canaliculata_contig10238.376.1 vs. uniprot
Match: A0A1Z5KJV7_FISSO (YEATS domain-containing protein 4 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJV7_FISSO) HSP 1 Score: 79.0 bits (193), Expect = 3.170e-14 Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 139 KTRKKGISVACPIAYGSLAFLLERKKQSEYITHKWTLFVRGPNGEDISYFVSKVVFTLHPSFAEATRGKSE 351
+TR++ V P+A GS+AF L K ++ TH+WTL+VRGP+GED+S + KV+F LHPSFA+ TR +E
Sbjct: 11 ETRRENTIVCLPVATGSIAFYLGNKSDTQ--THEWTLYVRGPSGEDLSVVLEKVIFQLHPSFAQPTRELTE 79 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10238.376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10238.376.1 >prot_P-canaliculata_contig10238.376.1 ID=prot_P-canaliculata_contig10238.376.1|Name=mRNA_P-canaliculata_contig10238.376.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=120bp SAQATNGTAGDGTAGTGCTSQGSEANVGGSAGGTCATAPKPSHETVKTRKback to top mRNA from alignment at P-canaliculata_contig10238:2553..4545+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10238.376.1 ID=mRNA_P-canaliculata_contig10238.376.1|Name=mRNA_P-canaliculata_contig10238.376.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1993bp|location=Sequence derived from alignment at P-canaliculata_contig10238:2553..4545+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10238:2553..4545+ >mRNA_P-canaliculata_contig10238.376.1 ID=mRNA_P-canaliculata_contig10238.376.1|Name=mRNA_P-canaliculata_contig10238.376.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at P-canaliculata_contig10238:2553..4545+ (Pelvetia canaliculata dioecious)back to top |