mRNA_P-canaliculata_contig102364.373.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig102364.373.1 vs. uniprot
Match: A0A3A0C6W3_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0C6W3_9BACT) HSP 1 Score: 106 bits (265), Expect = 7.470e-22 Identity = 79/173 (45.66%), Postives = 90/173 (52.02%), Query Frame = 1
Query: 4 DTDCDGVPDYKDT---------DSDGDGIAD--------ASDNCRIDANGS----QFDFDFDGVGNSCDASPANASLCGDSDGDSCDDCA--NGSFDPANDGTDTDSDGQCDAGDXXXXXXXXLDGSDASPLDAFACQDSDGDSCDDCSVAGMPQPDNDGLDTDSDGACDAGD 453
D D DGVPD +D DSD DG D ASD D +G+ D D D V + DA P NA +CGDSDGD CDDC+ G NDG D D+DG CDAGD D D P D F C+D+D D CDDC + G P P DGLD D+DG CD GD
Sbjct: 273 DDDNDGVPDGEDEAPLNQFACRDSDADGCDDCTSGVENAASDGLDTDGDGTCDVGDPDDDNDTVLDGADADPYNAFVCGDSDGDGCDDCSVTGGPPSTTNDGPDFDNDGFCDAGDLDDDMDGVSDDMDNDPFDPFVCRDADADGCDDCGILGSPDPSIDGLDFDADGLCDDGD 445
BLAST of mRNA_P-canaliculata_contig102364.373.1 vs. uniprot
Match: X0XNF9_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0XNF9_9ZZZZ) HSP 1 Score: 100 bits (249), Expect = 1.240e-21 Identity = 60/115 (52.17%), Postives = 71/115 (61.74%), Query Frame = 1
Query: 112 DFDFDGVGNSCDASPANASLCGDSDGDSCDDCAN-GSFDPANDGTDTDSDGQCDAGDXXXXXXXXLDGSDASPLDAFACQDSDGDSCDDCSVAGMPQPDNDGLDTDSDGACDAGD 453
D D D V + D P + +C D D DSCDDC+ G D ++DGTDTDSDG C+ GD LDG D PLD CQD D D+CDDCSV G+P +DG DTDSDG C+ GD
Sbjct: 22 DTDGDTVLDGVDTDPLDPLVCQDLDSDSCDDCSVLGLPDTSDDGTDTDSDGLCNTGDPDDDNDTVLDGVDTDPLDPLVCQDLDSDTCDDCSVLGLPDTSDDGTDTDSDGLCNTGD 136
BLAST of mRNA_P-canaliculata_contig102364.373.1 vs. uniprot
Match: A0A8B2HLM9_9ARCH (HYR domain-containing protein n=1 Tax=Nitrosopumilus sp. K4 TaxID=2795383 RepID=A0A8B2HLM9_9ARCH) HSP 1 Score: 100 bits (249), Expect = 1.100e-19 Identity = 68/133 (51.13%), Postives = 83/133 (62.41%), Query Frame = 1
Query: 94 ANGSQFDFDFDGVGNSCDAS-------------PANASLCGDSDGDSCDDCANGSFDPANDGTDTDSDGQCDAGDXXXXXXXXLDGSDASPLDAFACQDSDGDSCDDCSVAGMPQPDNDGLDTDSDGACDAGD 453
AN Q + D D G++CD P +A+ CGD+D D+CDDC +G+FD +NDG D DSD CD GDX XXXXX D SD PL+ F C DSD DSCDDCSV G ++DG DTD+DG C+ GD
Sbjct: 371 ANADQANIDGDQHGDACDPDSDNDTIPDVDDPYPLDATACGDADLDACDDCVSGTFDTSNDGPDYDSDLICDIGDXDDXXXXXPDPSDLDPLNQFICTDSDADSCDDCSVLGYANANDDGTDTDTDGLCNVGD 503
BLAST of mRNA_P-canaliculata_contig102364.373.1 vs. uniprot
Match: A0A1H4PV61_9FLAO (C-terminal domain of CHU protein family protein n=8 Tax=Maribacter TaxID=252356 RepID=A0A1H4PV61_9FLAO) HSP 1 Score: 95.5 bits (236), Expect = 6.840e-18 Identity = 68/159 (42.77%), Postives = 82/159 (51.57%), Query Frame = 1
Query: 1 VDTDCDGVPDYKDTDSDGDGIADASDNCRIDANGSQFDFDFDGVGNSCDASPANASLCGDSDGDSCDDCANGSFDPANDGTDTDSDGQCDAGDXXXXXXXXLDGSDASPLDAFACQDSDGDSCDDCSVAGMPQ--------PDNDGLDTDSDGACDAGD 453
+DTD DG+ D DTD D DG+ +DN +D + Q D DG + S D A +FDPANDG DTD DG CD GD LD +D +PLD +CQD+DGD CDDCS P NDG+DTD DG CD+GD
Sbjct: 913 LDTDGDGICDTGDTDDDNDGVLXVNDNAPLDPSSCQ---DADGXXXXXXXXTS-----------STDFSAGANFDPANDGLDTDGDGICDTGDTDDDNDGVLDVNDNAPLDPSSCQDADGDGCDDCSATSSTDFSVGNNFDPSNDGIDTDGDGICDSGD 1057
BLAST of mRNA_P-canaliculata_contig102364.373.1 vs. uniprot
Match: UPI0015BAE525 (T9SS type A sorting domain-containing protein n=1 Tax=Winogradskyella schleiferi TaxID=2686078 RepID=UPI0015BAE525) HSP 1 Score: 94.4 bits (233), Expect = 1.230e-17 Identity = 63/130 (48.46%), Postives = 76/130 (58.46%), Query Frame = 1
Query: 13 CDGVP-DYKD------TDSDGDGIADASDNCRIDANGSQFDFDFDGVGNSCDASPANASLCGDSDGDSCDDCANGSFDPANDGTDTDSDGQCDAGDXXXXXXXXLDGSDASPLDAFACQDSDGDSCDDCS 381
CDGV D D TD+DGDG AD D D D DGV + D+SP N +C D+DGD CDDC++G+ D ANDGTDTD DG C+AGD +D D PL+ F C+D+D D CDDCS
Sbjct: 364 CDGVDNDLNDGVDEGFTDTDGDGKADCID----------LDDDNDGVADGDDSSPLNQFVCRDADGDGCDDCSSGTDDAANDGTDTDGDGLCNAGDIDDDNDGVVDVDDLEPLNPFICRDADNDGCDDCS 483
BLAST of mRNA_P-canaliculata_contig102364.373.1 vs. uniprot
Match: A0A1I6IQ01_9FLAO (Gliding motility-associated C-terminal domain-containing protein n=6 Tax=Maribacter TaxID=252356 RepID=A0A1I6IQ01_9FLAO) HSP 1 Score: 93.6 bits (231), Expect = 3.030e-17 Identity = 66/132 (50.00%), Postives = 75/132 (56.82%), Query Frame = 1
Query: 112 DFDFDGVGNSCDASPANASLCGDSDGDSCDDCA---------NGSFDPANDGTDTDSDGQCDAGDXXXXXXXXLDGSDASPLDAFACQDSDGDSCDDCSVAGMPQ--------PDNDGLDTDSDGACDAGDV 456
D D DGV + D +P N S C D DGD CDDC+ +FDPANDGTDTD DG CDA D XXXXX A+PL+ CQD DGD CDDCS P NDG+DTD DG C++GD
Sbjct: 1099 DDDNDGVLDGDDNAPLNPSSCQDLDGDGCDDCSATASTDFSVGNNFDPANDGTDTDGDGICDASDPDDXXXXXXXXXXAAPLNPSICQDLDGDGCDDCSATASTDFSAGNNFDPSNDGIDTDGDGICNSGDA 1230
BLAST of mRNA_P-canaliculata_contig102364.373.1 vs. uniprot
Match: UPI0012FFFE8A (Ig-like domain-containing protein n=1 Tax=Arenibacter hampyeongensis TaxID=1028743 RepID=UPI0012FFFE8A) HSP 1 Score: 93.6 bits (231), Expect = 3.040e-17 Identity = 74/155 (47.74%), Postives = 82/155 (52.90%), Query Frame = 1
Query: 40 TDSDGDGIADASDNCRIDANGSQFDFDFDGVGNSCDASPANASLCGDSDGDSCDDCA---------NGSFDPANDGTDTDSDGQCDAGDXXXXXXXXLDGSDASPLDAFACQDSDGDSCDDCSVAGMPQ--------PDNDGLDTDSDGACDAGD 453
TD+DGDGI DASD+ D A+P + S+C D DGD CDDC+ +FDPANDGTDTD DG CDA D XXXXXX A+PLD CQD D D CDDCS P NDG DTD DG CDA D
Sbjct: 1009 TDTDGDGICDASDS----------DXXXXXXXXXXXAAPLDPSICQDLDGDGCDDCSATSNTDFTTGNNFDPANDGTDTDGDGICDASDSDXXXXXXXXXXXAAPLDPSICQDVDSDGCDDCSATSNTDFTAGNNFDPANDGTDTDGDGICDASD 1153
BLAST of mRNA_P-canaliculata_contig102364.373.1 vs. uniprot
Match: A0A2E1X6J3_9BACT (Peptidase_S8 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E1X6J3_9BACT) HSP 1 Score: 92.0 bits (227), Expect = 9.350e-17 Identity = 69/175 (39.43%), Postives = 89/175 (50.86%), Query Frame = 1
Query: 1 VDTDCDGVPDYKDTDSDGDGIADASDNCRIDANGSQ---------------------FDFDFDGVGNSCDA----------------SPANASLCGDSDGDSCDDCANGSFDPANDGTDTDSDGQCDAGDXXXXXXXXLDGSDASPLDAFACQDSDGDSCDDCSVAGMPQPDNDG 414
+DTD DG+ D D D D DG+ D+ D+ +D N + D DG+ CDA +P + ++C D DGDSCDDC++G +PA DGTDTDSDG CDAGD +DG D +PLD C+D D D CDDCS +G+ P NDG
Sbjct: 1215 IDTDSDGLIDPCDPDDDNDGVVDSEDDAPLDPNVCRDLXXXXXXXXXXXXXXXXXXXXXXDSDGL---CDAGDPDDDNXXVVXGEDNAPLDPNVCRDLDGDSCDDCSSGIDNPAGDGTDTDSDGLCDAGDPDDDNDGVVDGEDNAPLDNTICRDVDNDGCDDCS-SGVDDPANDG 1385
BLAST of mRNA_P-canaliculata_contig102364.373.1 vs. uniprot
Match: A0A661FK90_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661FK90_9GAMM) HSP 1 Score: 90.9 bits (224), Expect = 1.860e-16 Identity = 70/178 (39.33%), Postives = 85/178 (47.75%), Query Frame = 1
Query: 43 DSDGDGIADASDNCRIDANGSQFDFDFDGVGNS------CDASPANA-----SLCGDSDGDSCDDCANGSFDPANDGTDTDSDGQCDAGDXXXXXXXXL-----------------------DGSDASPLDAFACQDSDGDSCDDCSVA-------GMPQPDNDGLDTDSDGACDAGD 453
DSDGDGI DA D C D DG+G+ CDAS + ++CGD+DGD C+DC+ G FDPA DG+D DSDG CD GD DG+D +P D C D D D+CDDC++ G P NDG D + DG CDAGD
Sbjct: 629 DSDGDGIGDACDRCN--------DVVGDGLGDGRLGNADCDASATDTDDTDPTVCGDTDGDGCEDCSGGFFDPAADGSDLDSDGICDLGDNCPVDANSSQDDNDLDGAGDACDADDDNDGVDDGADPAPFDPDLCGDVDADTCDDCAIGTDDLGPLGDSDPANDGADFEGDGLCDAGD 798
BLAST of mRNA_P-canaliculata_contig102364.373.1 vs. uniprot
Match: A0A7W1XX02_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7W1XX02_9BACT) HSP 1 Score: 89.7 bits (221), Expect = 5.280e-16 Identity = 62/137 (45.26%), Postives = 73/137 (53.28%), Query Frame = 1
Query: 43 DSDGDGIADASDNCRIDANGSQFDFDFDGVGNSCDASPANASLCGDSDGDSCDDCANGSFDPANDGTDTDSDGQCDAGDXXXXXXXXLDGSDASPLDAFACQDSDGDSCDDCSVAGMPQPDNDGLDTDSDGACDAGD 453
D D DG+ D +D D D DGV ++ D P N C D D D CDDCANG+ DP NDG DTD+DG C+ D D D+ PLD F C D D D CDDC+ G+ +DG DTD DG CD D
Sbjct: 522 DFDADGLCDEADP----------DDDNDGVSDAEDLDPLNPLSCRDVDLDGCDDCANGTDDPLNDGVDTDADGVCNLQDEDDDNDGIADLEDSHPLDPFLCGDVDMDGCDDCTT-GVSDTTSDGTDTDGDGICDLAD 647 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102364.373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig102364.373.1 >prot_P-canaliculata_contig102364.373.1 ID=prot_P-canaliculata_contig102364.373.1|Name=mRNA_P-canaliculata_contig102364.373.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=326bp VDTDCDGVPDYKDTDSDGDGIADASDNCRIDANGSQFDFDFDGVGNSCDAback to top mRNA from alignment at P-canaliculata_contig102364:19..996+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig102364.373.1 ID=mRNA_P-canaliculata_contig102364.373.1|Name=mRNA_P-canaliculata_contig102364.373.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=978bp|location=Sequence derived from alignment at P-canaliculata_contig102364:19..996+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig102364:19..996+ >mRNA_P-canaliculata_contig102364.373.1 ID=mRNA_P-canaliculata_contig102364.373.1|Name=mRNA_P-canaliculata_contig102364.373.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1956bp|location=Sequence derived from alignment at P-canaliculata_contig102364:19..996+ (Pelvetia canaliculata dioecious)back to top |