mRNA_P-canaliculata_contig102339.370.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102339.370.1
Unique NamemRNA_P-canaliculata_contig102339.370.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig102339.370.1 vs. uniprot
Match: A0A2E1ZDE8_9CHLR (Response regulator n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A2E1ZDE8_9CHLR)

HSP 1 Score: 66.6 bits (161), Expect = 9.100e-12
Identity = 38/114 (33.33%), Postives = 61/114 (53.51%), Query Frame = 1
Query:    4 MVVFITSDLMMASNASAHAKQQGIKICQVSSAEQGMKIVKEDRPHLLLVDLQCPGLDIAGLGKSLSKLADSISPLTIGFAQHVETSKLQAGKDAGFDQVLTRGQMNSQVGQIIA 345
            M++ + +DLM AS  S  AK   + +  V SAEQ +  VKE+RP L++ DL    L       ++   A+  S  T+G+  H++     A +DAG D+VL R   + Q+  I++
Sbjct:    1 MIIAVVNDLMFASKISTVAKAVKVDVVFVRSAEQVLLRVKEERPSLVIFDLNSAKLKPLETITAIKTNAELQSIRTLGYLSHIDVDLASAARDAGVDKVLARSTFSEQLPSILS 114          
BLAST of mRNA_P-canaliculata_contig102339.370.1 vs. uniprot
Match: A0A518ISP7_9BACT (Uncharacterized protein n=2 Tax=Rosistilla TaxID=2795779 RepID=A0A518ISP7_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 3.990e-9
Identity = 34/114 (29.82%), Postives = 63/114 (55.26%), Query Frame = 1
Query:   10 VFITSDLMMASNASAHAKQQGIKICQVSSAEQGMKIVKEDRPHLLLVDLQCPGLDIAGLGKSLSKLADSISPLTIGFAQHVETSKLQAGKDAGFDQVLTRGQMNSQVGQIIAGA 351
            + +++DL  AS   + A + G ++    S E   K+  ++   +++VDL   G  +  + + + + A S     + F  HV+T +L A ++AGFD VLTRGQ++  +GQ+ + A
Sbjct:    5 LLLSTDLFFASRIKSAAVEAGYEMSMGKSIE---KVTLKEGLQVVIVDLSTTGSTVEAIAQHVREQAPSAR--LVAFGPHVQTGRLAAAREAGFDVVLTRGQLDHGLGQLFSEA 113          
BLAST of mRNA_P-canaliculata_contig102339.370.1 vs. uniprot
Match: A0A518JRY7_9BACT (Uncharacterized protein n=1 Tax=Rosistilla carotiformis TaxID=2528017 RepID=A0A518JRY7_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 3.200e-8
Identity = 32/111 (28.83%), Postives = 59/111 (53.15%), Query Frame = 1
Query:   10 VFITSDLMMASNASAHAKQQGIKICQVSSAEQGMKIVKEDRPHLLLVDLQCPGLDIAGLGKSLSKLADSISPLTIGFAQHVETSKLQAGKDAGFDQVLTRGQMNSQVGQII 342
            + +++DL  AS   + A + G ++    S E   K+  +D   +++VDL   G  +  + + + +   +     I F  HV+T +L A ++AGFD VLTRGQ++  + Q+ 
Sbjct:    6 LLLSTDLFFASRIKSAATEAGYEMSMGKSVE---KVTLKDDLRVVIVDLATTGSTVEAISEHIHQQTPTAK--LIAFGPHVQTGRLDAAREAGFDLVLTRGQLDRGLSQLF 111          
BLAST of mRNA_P-canaliculata_contig102339.370.1 vs. uniprot
Match: A0A2E7L2U9_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7L2U9_9PLAN)

HSP 1 Score: 57.0 bits (136), Expect = 4.920e-8
Identity = 41/112 (36.61%), Postives = 57/112 (50.89%), Query Frame = 1
Query:   10 VFITSDLMMASNASAHAKQQGIKICQVSSAEQGMKIVKEDRPHLLLVDLQCPGLDIAGLGKSLSKLADSISPLTI-GFAQHVETSKLQAGKDAGFDQVLTRGQMNSQVGQII 342
            +F+T D+M AS   A A    I I  VSS  Q +      +P L +VDL     D   L  ++  + D     TI  F  HV  +KLQA K AG DQVL+RGQ + ++  ++
Sbjct:    4 LFLTEDMMFASRVGAQANSLNIPIETVSSVAQ-LDESLSCQPTLFVVDLAAVPTD--QLEATVETVRDRAPGATIIAFGPHVWEAKLQAAKQAGCDQVLSRGQFHKEMSDLL 112          
BLAST of mRNA_P-canaliculata_contig102339.370.1 vs. uniprot
Match: A0A3A0DVP3_9BACT (Response regulatory domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0DVP3_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 5.030e-8
Identity = 34/112 (30.36%), Postives = 60/112 (53.57%), Query Frame = 1
Query:   10 VFITSDLMMASNASAHAKQQGIKICQVSSAEQGMKIVKEDRPHLLLVDLQCPGLDIAGLGKSLSKLADSISPLTIGFAQHVETSKLQAGKDAGFDQVLTRGQMNSQVGQIIA 345
            + +++DL  +SN +  A + G       +    ++      P L+++DL  PGLD A +   L  LA   + + I F  HV  +KL A ++AG DQV++RG+ ++ +  I+A
Sbjct:    4 LLLSADLATSSNVTGAAARCGASCETAWTPAAAVEKAANLAPRLVILDLSTPGLDPAAIVAELQGLAAPPNRI-IAFGPHVHEAKLAAAREAGCDQVISRGRFHADLDAILA 114          
BLAST of mRNA_P-canaliculata_contig102339.370.1 vs. uniprot
Match: A0A5Q4GYV4_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A5Q4GYV4_9PLAN)

HSP 1 Score: 54.3 bits (129), Expect = 5.390e-7
Identity = 32/114 (28.07%), Postives = 65/114 (57.02%), Query Frame = 1
Query:    7 VVFITSDLMMASNASAHAKQQGIKICQVSSAEQGMKIVKEDRP-HLLLVDLQCPGLDIAGLGKSLSKLADSISPL-TIGFAQHVETSKLQAGKDAGFDQVLTRGQMNSQVGQII 342
            V+ +++DL+ +S  +  A+   + +  V+  ++ ++ V ++   HLL++DL     D+  +  ++ +   S+SP   + +A HV    LQ  + AG DQVLTRGQ  S++ +++
Sbjct:    3 VLLLSTDLLFSSRVAQAARAASVDLRLVTGTDEVLQHVADEVSLHLLILDLSASDCDVQRIVTAVRR---SLSPARVVAYASHVLGPVLQRARQAGCDQVLTRGQFTSRLDELM 113          
BLAST of mRNA_P-canaliculata_contig102339.370.1 vs. uniprot
Match: A0A3L7P200_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7P200_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 1.780e-6
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 1
Query:  139 LLLVDLQCPGLDIAGLGKSLSKLADSISPLTIGFAQHVETSKLQAGKDAGFDQVLTRGQMNSQVGQII 342
            +L++DL+   LD+A +G+ L++      PLT+ +A HV T +LQ   DAGF  V+TRGQ  +Q+  I+
Sbjct:   69 VLVLDLEASDLDLAAIGE-LTRTTGK--PLTVAYAPHVATERLQGAADAGFAAVITRGQAANQLPAIL 133          
BLAST of mRNA_P-canaliculata_contig102339.370.1 vs. uniprot
Match: A0A518G7X8_9BACT (Uncharacterized protein n=1 Tax=Aureliella helgolandensis TaxID=2527968 RepID=A0A518G7X8_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 6.710e-6
Identity = 35/122 (28.69%), Postives = 60/122 (49.18%), Query Frame = 1
Query:    4 MVVFITSDLMMASNASAHAKQQGIKICQVSSAEQGMKIVKEDRPHLLLVDLQCPGLDIAGLGK-SLSKLADSISPLT--------IGFAQHVETSKLQAGKDAGFDQVLTRGQMNSQVGQII 342
            M++F T DL       + A  QG+++  V +          D P L  +D     + +  L    +SK+A++ +           IGF  HV+T +L+A + AGFD VL+RGQ++ Q+  ++
Sbjct:    1 MLLFQTKDLFFVPVVKSAAAAQGLELATVLNC---------DSPKLETLDAALIRICLVDLSSVPVSKIAETAASYRARFPAAQLIGFGPHVQTQRLEAARAAGFDHVLSRGQLDHQLADLL 113          
BLAST of mRNA_P-canaliculata_contig102339.370.1 vs. uniprot
Match: A0A3C1QUM8_9PLAN (Histidine kinase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3C1QUM8_9PLAN)

HSP 1 Score: 50.8 bits (120), Expect = 1.850e-5
Identity = 35/119 (29.41%), Postives = 62/119 (52.10%), Query Frame = 1
Query:    4 MVVFITSDLMMASNASAHAKQQGIK--ICQVSSAEQGMKIVKEDRPHLLLVDLQCPGLDIAGLGKSLSKLADSISPLTIGFAQHVETSKLQAGKDAGFDQVLTRGQMNSQVGQIIAGAS 354
            M+V +++DLM AS     A+  G++  +   S    G+     +RP L+ VDL      I  L + L  + D+     + +A HV    L+  + A  D+VLTRG+ + ++G+++A A+
Sbjct:   26 MIVLVSNDLMFASRVKLAAEPLGLRFRLAPGSFDPAGLP----ERPTLIAVDLHLAWKPIDELVRELRAVTDA---KIVAYAGHVMIDALREARRAECDEVLTRGEFDRRLGELVAAAA 137          
BLAST of mRNA_P-canaliculata_contig102339.370.1 vs. uniprot
Match: A0A354XSA4_9ACTN (DNA-binding response regulator n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A354XSA4_9ACTN)

HSP 1 Score: 50.4 bits (119), Expect = 6.420e-5
Identity = 29/83 (34.94%), Postives = 52/83 (62.65%), Query Frame = 1
Query:   61 KQQGIKICQVSSAEQGMKIVKEDRPHLLLVDLQCPGLDIAGLGKSLSKLADSISPLTIGFAQHVETSKLQAGKDAGFDQVLTR 309
            + +G ++ +  +AEQG+ IV++++P ++LVDL+ PG+    L +SL   A S  P+ I  AQ  ++  + AG +AG D  +T+
Sbjct:   23 EDEGYRVLEAVTAEQGLVIVQDEQPDVVLVDLRLPGIHGLDLVRSLR--ATSSVPIVIVTAQ-TDSHDVVAGLEAGADDYVTK 102          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102339.370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A2E1ZDE8_9CHLR9.100e-1233.33Response regulator n=1 Tax=Dehalococcoidia bacteri... [more]
A0A518ISP7_9BACT3.990e-929.82Uncharacterized protein n=2 Tax=Rosistilla TaxID=2... [more]
A0A518JRY7_9BACT3.200e-828.83Uncharacterized protein n=1 Tax=Rosistilla carotif... [more]
A0A2E7L2U9_9PLAN4.920e-836.61Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A3A0DVP3_9BACT5.030e-830.36Response regulatory domain-containing protein n=1 ... [more]
A0A5Q4GYV4_9PLAN5.390e-728.07Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A3L7P200_9BACT1.780e-641.18Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A518G7X8_9BACT6.710e-628.69Uncharacterized protein n=1 Tax=Aureliella helgola... [more]
A0A3C1QUM8_9PLAN1.850e-529.41Histidine kinase n=1 Tax=Planctomycetaceae bacteri... [more]
A0A354XSA4_9ACTN6.420e-534.94DNA-binding response regulator n=1 Tax=Actinomycet... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102339contigP-canaliculata_contig102339:514..870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size354
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.1837025-UTR-P-canaliculata_contig102339:513..5161622815597.1837025-UTR-P-canaliculata_contig102339:513..516Pelvetia canaliculata dioeciousUTRP-canaliculata_contig102339 514..516 +
1693494157.5304396-UTR-P-canaliculata_contig102339:513..5161693494157.5304396-UTR-P-canaliculata_contig102339:513..516Pelvetia canaliculata dioeciousUTRP-canaliculata_contig102339 514..516 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.1971753-CDS-P-canaliculata_contig102339:516..8701622815597.1971753-CDS-P-canaliculata_contig102339:516..870Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102339 517..870 +
1693494157.541176-CDS-P-canaliculata_contig102339:516..8701693494157.541176-CDS-P-canaliculata_contig102339:516..870Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102339 517..870 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102339.370.1prot_P-canaliculata_contig102339.370.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102339 517..870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102339.370.1

>prot_P-canaliculata_contig102339.370.1 ID=prot_P-canaliculata_contig102339.370.1|Name=mRNA_P-canaliculata_contig102339.370.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=118bp
MVVFITSDLMMASNASAHAKQQGIKICQVSSAEQGMKIVKEDRPHLLLVD
LQCPGLDIAGLGKSLSKLADSISPLTIGFAQHVETSKLQAGKDAGFDQVL
TRGQMNSQVGQIIAGAS*
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mRNA from alignment at P-canaliculata_contig102339:514..870+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102339.370.1 ID=mRNA_P-canaliculata_contig102339.370.1|Name=mRNA_P-canaliculata_contig102339.370.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=357bp|location=Sequence derived from alignment at P-canaliculata_contig102339:514..870+ (Pelvetia canaliculata dioecious)
ATCATGGTTGTTTTTATTACTTCCGATTTAATGATGGCATCCAATGCCAG TGCCCACGCTAAGCAACAGGGTATTAAAATCTGTCAGGTCTCTTCAGCTG AGCAGGGTATGAAGATTGTGAAAGAGGATCGGCCACATTTATTATTGGTG GATTTGCAATGCCCAGGCTTGGATATCGCAGGTCTGGGAAAGTCTCTCTC CAAACTAGCGGATTCGATCTCGCCATTAACTATCGGTTTTGCTCAGCATG TAGAGACTTCGAAATTGCAGGCTGGTAAAGACGCTGGCTTTGATCAAGTC TTGACCCGCGGGCAAATGAACAGCCAAGTTGGCCAGATCATCGCCGGAGC GAGTTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig102339:514..870+

>mRNA_P-canaliculata_contig102339.370.1 ID=mRNA_P-canaliculata_contig102339.370.1|Name=mRNA_P-canaliculata_contig102339.370.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at P-canaliculata_contig102339:514..870+ (Pelvetia canaliculata dioecious)
ATGGTTGTTTTTATTACTTCCGATTTAATGATGGCATCCAATGCCAGTGC
CCACGCTAAGCAACAGGGTATTAAAATCTGTCAGGTCTCTTCAGCTGAGC
AGGGTATGAAGATTGTGAAAGAGGATCGGCCACATTTATTATTGGTGGAT
TTGCAATGCCCAGGCTTGGATATCGCAGGTCTGGGAAAGTCTCTCTCCAA
ACTAGCGGATTCGATCTCGCCATTAACTATCGGTTTTGCTCAGCATGTAG
AGACTTCGAAATTGCAGGCTGGTAAAGACGCTGGCTTTGATCAAGTCTTG
ACCCGCGGGCAAATGAACAGCCAAGTTGGCCAGATCATCGCCGGAGCGAG
TTAGATGGTTGTTTTTATTACTTCCGATTTAATGATGGCATCCAATGCCA
GTGCCCACGCTAAGCAACAGGGTATTAAAATCTGTCAGGTCTCTTCAGCT
GAGCAGGGTATGAAGATTGTGAAAGAGGATCGGCCACATTTATTATTGGT
GGATTTGCAATGCCCAGGCTTGGATATCGCAGGTCTGGGAAAGTCTCTCT
CCAAACTAGCGGATTCGATCTCGCCATTAACTATCGGTTTTGCTCAGCAT
GTAGAGACTTCGAAATTGCAGGCTGGTAAAGACGCTGGCTTTGATCAAGT
CTTGACCCGCGGGCAAATGAACAGCCAAGTTGGCCAGATCATCGCCGGAG
CGAGTTAG
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