mRNA_P-canaliculata_contig102339.370.1 (mRNA) Pelvetia canaliculata dioecious
|
Overview
Homology
BLAST of mRNA_P-canaliculata_contig102339.370.1 vs. uniprot
Match: A0A2E1ZDE8_9CHLR (Response regulator n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A2E1ZDE8_9CHLR) HSP 1 Score: 66.6 bits (161), Expect = 9.100e-12 Identity = 38/114 (33.33%), Postives = 61/114 (53.51%), Query Frame = 1
Query: 4 MVVFITSDLMMASNASAHAKQQGIKICQVSSAEQGMKIVKEDRPHLLLVDLQCPGLDIAGLGKSLSKLADSISPLTIGFAQHVETSKLQAGKDAGFDQVLTRGQMNSQVGQIIA 345
M++ + +DLM AS S AK + + V SAEQ + VKE+RP L++ DL L ++ A+ S T+G+ H++ A +DAG D+VL R + Q+ I++
Sbjct: 1 MIIAVVNDLMFASKISTVAKAVKVDVVFVRSAEQVLLRVKEERPSLVIFDLNSAKLKPLETITAIKTNAELQSIRTLGYLSHIDVDLASAARDAGVDKVLARSTFSEQLPSILS 114
BLAST of mRNA_P-canaliculata_contig102339.370.1 vs. uniprot
Match: A0A518ISP7_9BACT (Uncharacterized protein n=2 Tax=Rosistilla TaxID=2795779 RepID=A0A518ISP7_9BACT) HSP 1 Score: 59.7 bits (143), Expect = 3.990e-9 Identity = 34/114 (29.82%), Postives = 63/114 (55.26%), Query Frame = 1
Query: 10 VFITSDLMMASNASAHAKQQGIKICQVSSAEQGMKIVKEDRPHLLLVDLQCPGLDIAGLGKSLSKLADSISPLTIGFAQHVETSKLQAGKDAGFDQVLTRGQMNSQVGQIIAGA 351
+ +++DL AS + A + G ++ S E K+ ++ +++VDL G + + + + + A S + F HV+T +L A ++AGFD VLTRGQ++ +GQ+ + A
Sbjct: 5 LLLSTDLFFASRIKSAAVEAGYEMSMGKSIE---KVTLKEGLQVVIVDLSTTGSTVEAIAQHVREQAPSAR--LVAFGPHVQTGRLAAAREAGFDVVLTRGQLDHGLGQLFSEA 113
BLAST of mRNA_P-canaliculata_contig102339.370.1 vs. uniprot
Match: A0A518JRY7_9BACT (Uncharacterized protein n=1 Tax=Rosistilla carotiformis TaxID=2528017 RepID=A0A518JRY7_9BACT) HSP 1 Score: 57.4 bits (137), Expect = 3.200e-8 Identity = 32/111 (28.83%), Postives = 59/111 (53.15%), Query Frame = 1
Query: 10 VFITSDLMMASNASAHAKQQGIKICQVSSAEQGMKIVKEDRPHLLLVDLQCPGLDIAGLGKSLSKLADSISPLTIGFAQHVETSKLQAGKDAGFDQVLTRGQMNSQVGQII 342
+ +++DL AS + A + G ++ S E K+ +D +++VDL G + + + + + + I F HV+T +L A ++AGFD VLTRGQ++ + Q+
Sbjct: 6 LLLSTDLFFASRIKSAATEAGYEMSMGKSVE---KVTLKDDLRVVIVDLATTGSTVEAISEHIHQQTPTAK--LIAFGPHVQTGRLDAAREAGFDLVLTRGQLDRGLSQLF 111
BLAST of mRNA_P-canaliculata_contig102339.370.1 vs. uniprot
Match: A0A2E7L2U9_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7L2U9_9PLAN) HSP 1 Score: 57.0 bits (136), Expect = 4.920e-8 Identity = 41/112 (36.61%), Postives = 57/112 (50.89%), Query Frame = 1
Query: 10 VFITSDLMMASNASAHAKQQGIKICQVSSAEQGMKIVKEDRPHLLLVDLQCPGLDIAGLGKSLSKLADSISPLTI-GFAQHVETSKLQAGKDAGFDQVLTRGQMNSQVGQII 342
+F+T D+M AS A A I I VSS Q + +P L +VDL D L ++ + D TI F HV +KLQA K AG DQVL+RGQ + ++ ++
Sbjct: 4 LFLTEDMMFASRVGAQANSLNIPIETVSSVAQ-LDESLSCQPTLFVVDLAAVPTD--QLEATVETVRDRAPGATIIAFGPHVWEAKLQAAKQAGCDQVLSRGQFHKEMSDLL 112
BLAST of mRNA_P-canaliculata_contig102339.370.1 vs. uniprot
Match: A0A3A0DVP3_9BACT (Response regulatory domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0DVP3_9BACT) HSP 1 Score: 57.0 bits (136), Expect = 5.030e-8 Identity = 34/112 (30.36%), Postives = 60/112 (53.57%), Query Frame = 1
Query: 10 VFITSDLMMASNASAHAKQQGIKICQVSSAEQGMKIVKEDRPHLLLVDLQCPGLDIAGLGKSLSKLADSISPLTIGFAQHVETSKLQAGKDAGFDQVLTRGQMNSQVGQIIA 345
+ +++DL +SN + A + G + ++ P L+++DL PGLD A + L LA + + I F HV +KL A ++AG DQV++RG+ ++ + I+A
Sbjct: 4 LLLSADLATSSNVTGAAARCGASCETAWTPAAAVEKAANLAPRLVILDLSTPGLDPAAIVAELQGLAAPPNRI-IAFGPHVHEAKLAAAREAGCDQVISRGRFHADLDAILA 114
BLAST of mRNA_P-canaliculata_contig102339.370.1 vs. uniprot
Match: A0A5Q4GYV4_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A5Q4GYV4_9PLAN) HSP 1 Score: 54.3 bits (129), Expect = 5.390e-7 Identity = 32/114 (28.07%), Postives = 65/114 (57.02%), Query Frame = 1
Query: 7 VVFITSDLMMASNASAHAKQQGIKICQVSSAEQGMKIVKEDRP-HLLLVDLQCPGLDIAGLGKSLSKLADSISPL-TIGFAQHVETSKLQAGKDAGFDQVLTRGQMNSQVGQII 342
V+ +++DL+ +S + A+ + + V+ ++ ++ V ++ HLL++DL D+ + ++ + S+SP + +A HV LQ + AG DQVLTRGQ S++ +++
Sbjct: 3 VLLLSTDLLFSSRVAQAARAASVDLRLVTGTDEVLQHVADEVSLHLLILDLSASDCDVQRIVTAVRR---SLSPARVVAYASHVLGPVLQRARQAGCDQVLTRGQFTSRLDELM 113
BLAST of mRNA_P-canaliculata_contig102339.370.1 vs. uniprot
Match: A0A3L7P200_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7P200_9BACT) HSP 1 Score: 53.5 bits (127), Expect = 1.780e-6 Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 1
Query: 139 LLLVDLQCPGLDIAGLGKSLSKLADSISPLTIGFAQHVETSKLQAGKDAGFDQVLTRGQMNSQVGQII 342
+L++DL+ LD+A +G+ L++ PLT+ +A HV T +LQ DAGF V+TRGQ +Q+ I+
Sbjct: 69 VLVLDLEASDLDLAAIGE-LTRTTGK--PLTVAYAPHVATERLQGAADAGFAAVITRGQAANQLPAIL 133
BLAST of mRNA_P-canaliculata_contig102339.370.1 vs. uniprot
Match: A0A518G7X8_9BACT (Uncharacterized protein n=1 Tax=Aureliella helgolandensis TaxID=2527968 RepID=A0A518G7X8_9BACT) HSP 1 Score: 51.6 bits (122), Expect = 6.710e-6 Identity = 35/122 (28.69%), Postives = 60/122 (49.18%), Query Frame = 1
Query: 4 MVVFITSDLMMASNASAHAKQQGIKICQVSSAEQGMKIVKEDRPHLLLVDLQCPGLDIAGLGK-SLSKLADSISPLT--------IGFAQHVETSKLQAGKDAGFDQVLTRGQMNSQVGQII 342
M++F T DL + A QG+++ V + D P L +D + + L +SK+A++ + IGF HV+T +L+A + AGFD VL+RGQ++ Q+ ++
Sbjct: 1 MLLFQTKDLFFVPVVKSAAAAQGLELATVLNC---------DSPKLETLDAALIRICLVDLSSVPVSKIAETAASYRARFPAAQLIGFGPHVQTQRLEAARAAGFDHVLSRGQLDHQLADLL 113
BLAST of mRNA_P-canaliculata_contig102339.370.1 vs. uniprot
Match: A0A3C1QUM8_9PLAN (Histidine kinase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3C1QUM8_9PLAN) HSP 1 Score: 50.8 bits (120), Expect = 1.850e-5 Identity = 35/119 (29.41%), Postives = 62/119 (52.10%), Query Frame = 1
Query: 4 MVVFITSDLMMASNASAHAKQQGIK--ICQVSSAEQGMKIVKEDRPHLLLVDLQCPGLDIAGLGKSLSKLADSISPLTIGFAQHVETSKLQAGKDAGFDQVLTRGQMNSQVGQIIAGAS 354
M+V +++DLM AS A+ G++ + S G+ +RP L+ VDL I L + L + D+ + +A HV L+ + A D+VLTRG+ + ++G+++A A+
Sbjct: 26 MIVLVSNDLMFASRVKLAAEPLGLRFRLAPGSFDPAGLP----ERPTLIAVDLHLAWKPIDELVRELRAVTDA---KIVAYAGHVMIDALREARRAECDEVLTRGEFDRRLGELVAAAA 137
BLAST of mRNA_P-canaliculata_contig102339.370.1 vs. uniprot
Match: A0A354XSA4_9ACTN (DNA-binding response regulator n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A354XSA4_9ACTN) HSP 1 Score: 50.4 bits (119), Expect = 6.420e-5 Identity = 29/83 (34.94%), Postives = 52/83 (62.65%), Query Frame = 1
Query: 61 KQQGIKICQVSSAEQGMKIVKEDRPHLLLVDLQCPGLDIAGLGKSLSKLADSISPLTIGFAQHVETSKLQAGKDAGFDQVLTR 309
+ +G ++ + +AEQG+ IV++++P ++LVDL+ PG+ L +SL A S P+ I AQ ++ + AG +AG D +T+
Sbjct: 23 EDEGYRVLEAVTAEQGLVIVQDEQPDVVLVDLRLPGIHGLDLVRSLR--ATSSVPIVIVTAQ-TDSHDVVAGLEAGADDYVTK 102 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102339.370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig102339.370.1 >prot_P-canaliculata_contig102339.370.1 ID=prot_P-canaliculata_contig102339.370.1|Name=mRNA_P-canaliculata_contig102339.370.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=118bp MVVFITSDLMMASNASAHAKQQGIKICQVSSAEQGMKIVKEDRPHLLLVDback to top mRNA from alignment at P-canaliculata_contig102339:514..870+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig102339.370.1 ID=mRNA_P-canaliculata_contig102339.370.1|Name=mRNA_P-canaliculata_contig102339.370.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=357bp|location=Sequence derived from alignment at P-canaliculata_contig102339:514..870+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig102339:514..870+ >mRNA_P-canaliculata_contig102339.370.1 ID=mRNA_P-canaliculata_contig102339.370.1|Name=mRNA_P-canaliculata_contig102339.370.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at P-canaliculata_contig102339:514..870+ (Pelvetia canaliculata dioecious)back to top |