mRNA_P-canaliculata_contig102308.367.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102308.367.1
Unique NamemRNA_P-canaliculata_contig102308.367.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig102308.367.1 vs. uniprot
Match: A0A4Q5XGG8_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A4Q5XGG8_9DELT)

HSP 1 Score: 62.0 bits (149), Expect = 3.070e-8
Identity = 43/155 (27.74%), Postives = 71/155 (45.81%), Query Frame = 1 
Query:   70 SLTLPAGSFSLDG------LVVMNLSKGNIGEPISVSPDFWYGLSNEITLGLAHSFYGTTGMWGMDMRGGPQGRSLCLSAESGNCPKVYGNFSVLGRFQAWAGRGIAVAGTAGLVANSIDPFALSVKLGAHLRGRVSNSVRVDFIPSIFIGVTER 516
            S  LP GSF L G      ++ +N S+ + GEPI V+P F++G+++++T+G++H                   R LCL+     C KVY +      +         +   AG+   S  PF + ++ G   R  +       F PS+++GVT R
Sbjct:   31 SFLLPDGSFELTGDPARPAMLEINASRNSFGEPILVAPHFYWGVTDDLTIGISHQ------------------RGLCLNG----CDKVYNDAGFDLMYFLTGSDRFELDLHAGVPVGSFSPFYMGLQAGVLGRVNIGRITAFVFDPSLYVGVTHR 163
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BLAST of mRNA_P-canaliculata_contig102308.367.1 vs. uniprot
Match: A0A7W0QBN4_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W0QBN4_9DELT)

HSP 1 Score: 53.5 bits (127), Expect = 3.440e-5
Identity = 46/153 (30.07%), Postives = 73/153 (47.71%), Query Frame = 1 
Query:  118 MNLSKGNIGEPISVSPDFWYGLSNEITLGLAHSFYGTTGMWGMDMRGGPQGRSLCLSAESGN-------CPKVYGNFSVLGRFQAWAGRGIAVAGTAGLVANSIDPFALSVKLGAHLRG-RVSNSVRVDFIPSIFIGVTERQT-NREDLTVPV 549
            +NL+   +G+P S++PD W G++   TLG+ H      G   +D      G S C+    G+       C ++Y    +  R+Q W    +AVA  A L+   +DP+  +V LGA  R  R   ++  D  P + +G+  R   NR  L VP+
Sbjct:   45 LNLAARLVGQPTSLAPDAWLGVTERWTLGVIH------GNGSVDRIA--SGASFCVRQSEGHAASLPGACDRLYRGGGLDARWQ-WRDGSLAVAPRARLLVRDVDPWKPAVTLGALARWTRGRTAITTD--PYLRLGLANRDRGNRAALVVPL 186
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102308.367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A4Q5XGG8_9DELT3.070e-827.74Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A7W0QBN4_9DELT3.440e-530.07Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102308contigP-canaliculata_contig102308:14..586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score107.5
Seed ortholog evalue7.2e-21
Seed eggNOG ortholog502025.Hoch_5227
EggNOG OGs1QAPV@1224,2BB4A@1,2X96M@28221,2Z28J@29,324KN@2,4357V@68525
Best tax levelMyxococcales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size573
Cds size573
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.028635-CDS-P-canaliculata_contig102308:13..5861622815597.028635-CDS-P-canaliculata_contig102308:13..586Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102308 14..586 -
1693494157.4740872-CDS-P-canaliculata_contig102308:13..5861693494157.4740872-CDS-P-canaliculata_contig102308:13..586Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102308 14..586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102308.367.1prot_P-canaliculata_contig102308.367.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102308 14..586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102308.367.1

>prot_P-canaliculata_contig102308.367.1 ID=prot_P-canaliculata_contig102308.367.1|Name=mRNA_P-canaliculata_contig102308.367.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=191bp
DAQQAEEVSEYGVLEAPVELPPPSLTLPAGSFSLDGLVVMNLSKGNIGEP
ISVSPDFWYGLSNEITLGLAHSFYGTTGMWGMDMRGGPQGRSLCLSAESG
NCPKVYGNFSVLGRFQAWAGRGIAVAGTAGLVANSIDPFALSVKLGAHLR
GRVSNSVRVDFIPSIFIGVTERQTNREDLTVPVTVSYTLNP
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mRNA from alignment at P-canaliculata_contig102308:14..586-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102308.367.1 ID=mRNA_P-canaliculata_contig102308.367.1|Name=mRNA_P-canaliculata_contig102308.367.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=573bp|location=Sequence derived from alignment at P-canaliculata_contig102308:14..586- (Pelvetia canaliculata dioecious)
GATGCTCAGCAAGCAGAGGAAGTCTCAGAGTATGGAGTGTTGGAGGCGCC
AGTCGAGTTGCCTCCCCCATCGCTTACTCTGCCGGCTGGAAGTTTCAGTC
TTGACGGTTTGGTCGTAATGAATCTTTCGAAAGGAAACATCGGAGAGCCA
ATTTCTGTGTCACCAGATTTTTGGTACGGACTTTCCAACGAGATTACTCT
CGGCTTGGCTCATTCATTTTATGGGACCACCGGCATGTGGGGGATGGATA
TGCGAGGCGGACCTCAAGGACGTTCACTGTGCCTGAGCGCTGAGTCTGGA
AATTGCCCAAAAGTGTATGGAAACTTCTCTGTCTTAGGGCGGTTTCAAGC
TTGGGCCGGACGCGGCATTGCGGTTGCTGGAACAGCGGGACTTGTAGCGA
ACTCCATTGACCCATTCGCACTTAGCGTAAAACTAGGTGCTCATTTGCGT
GGACGGGTCAGCAACTCAGTTCGAGTCGACTTTATACCGAGCATCTTCAT
TGGTGTGACCGAGCGACAGACCAACCGCGAAGACCTGACCGTTCCGGTGA
CAGTTAGTTATACCTTGAATCCG
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Coding sequence (CDS) from alignment at P-canaliculata_contig102308:14..586-

>mRNA_P-canaliculata_contig102308.367.1 ID=mRNA_P-canaliculata_contig102308.367.1|Name=mRNA_P-canaliculata_contig102308.367.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at P-canaliculata_contig102308:14..586- (Pelvetia canaliculata dioecious)
GATGCTCAGCAAGCAGAGGAAGTCTCAGAGTATGGAGTGTTGGAGGCGCC
AGTCGAGTTGCCTCCCCCATCGCTTACTCTGCCGGCTGGAAGTTTCAGTC
TTGACGGTTTGGTCGTAATGAATCTTTCGAAAGGAAACATCGGAGAGCCA
ATTTCTGTGTCACCAGATTTTTGGTACGGACTTTCCAACGAGATTACTCT
CGGCTTGGCTCATTCATTTTATGGGACCACCGGCATGTGGGGGATGGATA
TGCGAGGCGGACCTCAAGGACGTTCACTGTGCCTGAGCGCTGAGTCTGGA
AATTGCCCAAAAGTGTATGGAAACTTCTCTGTCTTAGGGCGGTTTCAAGC
TTGGGCCGGACGCGGCATTGCGGTTGCTGGAACAGCGGGACTTGTAGCGA
ACTCCATTGACCCATTCGCACTTAGCGTAAAACTAGGTGCTCATTTGCGT
GGACGGGTCAGCAACTCAGTTCGAGTCGACTTTATACCGAGCATCTTCAT
TGGTGTGACCGAGCGACAGACCAACCGCGAAGACCTGACCGTTCCGGTGA
CAGTTAGTTATACCTTGAATCCGGATGCTCAGCAAGCAGAGGAAGTCTCA
GAGTATGGAGTGTTGGAGGCGCCAGTCGAGTTGCCTCCCCCATCGCTTAC
TCTGCCGGCTGGAAGTTTCAGTCTTGACGGTTTGGTCGTAATGAATCTTT
CGAAAGGAAACATCGGAGAGCCAATTTCTGTGTCACCAGATTTTTGGTAC
GGACTTTCCAACGAGATTACTCTCGGCTTGGCTCATTCATTTTATGGGAC
CACCGGCATGTGGGGGATGGATATGCGAGGCGGACCTCAAGGACGTTCAC
TGTGCCTGAGCGCTGAGTCTGGAAATTGCCCAAAAGTGTATGGAAACTTC
TCTGTCTTAGGGCGGTTTCAAGCTTGGGCCGGACGCGGCATTGCGGTTGC
TGGAACAGCGGGACTTGTAGCGAACTCCATTGACCCATTCGCACTTAGCG
TAAAACTAGGTGCTCATTTGCGTGGACGGGTCAGCAACTCAGTTCGAGTC
GACTTTATACCGAGCATCTTCATTGGTGTGACCGAGCGACAGACCAACCG
CGAAGACCTGACCGTTCCGGTGACAGTTAGTTATACCTTGAATCCG
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