mRNA_P-canaliculata_contig102308.367.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig102308.367.1 vs. uniprot
Match: A0A4Q5XGG8_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A4Q5XGG8_9DELT) HSP 1 Score: 62.0 bits (149), Expect = 3.070e-8 Identity = 43/155 (27.74%), Postives = 71/155 (45.81%), Query Frame = 1 Query: 70 SLTLPAGSFSLDG------LVVMNLSKGNIGEPISVSPDFWYGLSNEITLGLAHSFYGTTGMWGMDMRGGPQGRSLCLSAESGNCPKVYGNFSVLGRFQAWAGRGIAVAGTAGLVANSIDPFALSVKLGAHLRGRVSNSVRVDFIPSIFIGVTER 516
S LP GSF L G ++ +N S+ + GEPI V+P F++G+++++T+G++H R LCL+ C KVY + + + AG+ S PF + ++ G R + F PS+++GVT R
Sbjct: 31 SFLLPDGSFELTGDPARPAMLEINASRNSFGEPILVAPHFYWGVTDDLTIGISHQ------------------RGLCLNG----CDKVYNDAGFDLMYFLTGSDRFELDLHAGVPVGSFSPFYMGLQAGVLGRVNIGRITAFVFDPSLYVGVTHR 163
BLAST of mRNA_P-canaliculata_contig102308.367.1 vs. uniprot
Match: A0A7W0QBN4_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W0QBN4_9DELT) HSP 1 Score: 53.5 bits (127), Expect = 3.440e-5 Identity = 46/153 (30.07%), Postives = 73/153 (47.71%), Query Frame = 1 Query: 118 MNLSKGNIGEPISVSPDFWYGLSNEITLGLAHSFYGTTGMWGMDMRGGPQGRSLCLSAESGN-------CPKVYGNFSVLGRFQAWAGRGIAVAGTAGLVANSIDPFALSVKLGAHLRG-RVSNSVRVDFIPSIFIGVTERQT-NREDLTVPV 549
+NL+ +G+P S++PD W G++ TLG+ H G +D G S C+ G+ C ++Y + R+Q W +AVA A L+ +DP+ +V LGA R R ++ D P + +G+ R NR L VP+
Sbjct: 45 LNLAARLVGQPTSLAPDAWLGVTERWTLGVIH------GNGSVDRIA--SGASFCVRQSEGHAASLPGACDRLYRGGGLDARWQ-WRDGSLAVAPRARLLVRDVDPWKPAVTLGALARWTRGRTAITTD--PYLRLGLANRDRGNRAALVVPL 186 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102308.367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig102308.367.1 >prot_P-canaliculata_contig102308.367.1 ID=prot_P-canaliculata_contig102308.367.1|Name=mRNA_P-canaliculata_contig102308.367.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=191bp DAQQAEEVSEYGVLEAPVELPPPSLTLPAGSFSLDGLVVMNLSKGNIGEPback to top mRNA from alignment at P-canaliculata_contig102308:14..586- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig102308.367.1 ID=mRNA_P-canaliculata_contig102308.367.1|Name=mRNA_P-canaliculata_contig102308.367.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=573bp|location=Sequence derived from alignment at P-canaliculata_contig102308:14..586- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig102308:14..586- >mRNA_P-canaliculata_contig102308.367.1 ID=mRNA_P-canaliculata_contig102308.367.1|Name=mRNA_P-canaliculata_contig102308.367.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at P-canaliculata_contig102308:14..586- (Pelvetia canaliculata dioecious)back to top |