Homology
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match:
A0A357IBD8_9GAMM (Cold shock domain protein CspD n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A357IBD8_9GAMM)
HSP 1 Score: 57.4 bits (137), Expect = 1.840e-9
Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 1
Query: 1 MSSKSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLR 126
MS +S TVKWF+ K YGF VN GEDVF+HYRSIQ G +
Sbjct: 1 MSERSNGTVKWFDNAKGYGFIVNPDGEDVFVHYRSIQGDGYK 42
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match:
A0A352KLI8_9GAMM (Cold-shock protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A352KLI8_9GAMM)
HSP 1 Score: 56.6 bits (135), Expect = 3.700e-9
Identity = 25/42 (59.52%), Postives = 28/42 (66.67%), Query Frame = 1
Query: 1 MSSKSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLR 126
MS + + VKWFN K YGF D GEDVF+HYRSIQ G R
Sbjct: 1 MSVREKGVVKWFNNSKGYGFITRDQGEDVFVHYRSIQGDGFR 42
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match:
A0A7V2PUH6_9CHLR (Cold shock domain-containing protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7V2PUH6_9CHLR)
HSP 1 Score: 55.8 bits (133), Expect = 7.270e-9
Identity = 25/43 (58.14%), Postives = 28/43 (65.12%), Query Frame = 1
Query: 1 MSSKSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLRR 129
MS + TVKWFN K YGF + GEDVF+HY SI M G RR
Sbjct: 1 MSERLTGTVKWFNARKGYGFIGYEEGEDVFVHYSSIDMEGYRR 43
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match:
UPI001E5969DE (cold-shock protein n=1 Tax=Longispora fulva TaxID=619741 RepID=UPI001E5969DE)
HSP 1 Score: 55.8 bits (133), Expect = 1.090e-8
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1
Query: 7 SKSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLR 126
S +E TVKWFN EK YGF D G+DVF+H+ SIQM G +
Sbjct: 19 SVAEGTVKWFNSEKGYGFIAVDGGQDVFVHFSSIQMDGYK 58
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match:
A0A1E4ZWN7_9GAMM (CSD domain-containing protein n=1 Tax=Chromatiales bacterium (ex Bugula neritina AB1) TaxID=1868282 RepID=A0A1E4ZWN7_9GAMM)
HSP 1 Score: 55.1 bits (131), Expect = 1.470e-8
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 1
Query: 10 KSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLR 126
KS TVKWF+ K YGF VN+AGEDVF+HYRSI G +
Sbjct: 3 KSIGTVKWFDNAKGYGFIVNEAGEDVFVHYRSIVGEGYK 41
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match:
A0A1H0RPX6_MICTS (Cold-shock DNA-binding protein family n=8 Tax=Microbacteriaceae TaxID=85023 RepID=A0A1H0RPX6_MICTS)
HSP 1 Score: 54.7 bits (130), Expect = 1.940e-8
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 1
Query: 22 TVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLR 126
TVKWFN EK +GF D G+DVF+HY SI+M G R
Sbjct: 5 TVKWFNAEKGFGFITVDDGQDVFVHYSSIEMSGFR 39
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match:
A0A2M9E9Z1_9GAMM (Cold-shock protein n=7 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A2M9E9Z1_9GAMM)
HSP 1 Score: 54.7 bits (130), Expect = 2.080e-8
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 1
Query: 1 MSSKSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLR 126
MS + TVKWFN K +GF ++GEDVF+H+R+IQM G +
Sbjct: 1 MSDRETGTVKWFNDAKGFGFISRESGEDVFVHFRAIQMQGFK 42
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match:
UPI001CE3EDC5 (cold shock domain-containing protein n=1 Tax=Pseudoclavibacter sp. Marseille-Q3772 TaxID=2866588 RepID=UPI001CE3EDC5)
HSP 1 Score: 54.7 bits (130), Expect = 2.130e-8
Identity = 25/39 (64.10%), Postives = 28/39 (71.79%), Query Frame = 1
Query: 22 TVKWFNVEKSYGFAVND----AGEDVFIHYRSIQMVGLR 126
TVKWFN EK YGF D AG+DVF+HYRSI+M G R
Sbjct: 5 TVKWFNAEKGYGFITVDSADAAGQDVFVHYRSIEMDGFR 43
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match:
A0A1B3WBV0_9GAMM (Cold-shock protein n=3 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A1B3WBV0_9GAMM)
HSP 1 Score: 54.3 bits (129), Expect = 3.170e-8
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 1
Query: 1 MSSKSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLR 126
M+ + TVKWFN K +GF D+GEDVF+H+R+IQM G +
Sbjct: 3 MAEREIGTVKWFNDAKGFGFISRDSGEDVFVHFRAIQMPGFK 44
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Match:
A0A6N7GPF5_9ACTN (Cold-shock protein n=4 Tax=Micromonosporaceae TaxID=28056 RepID=A0A6N7GPF5_9ACTN)
HSP 1 Score: 53.9 bits (128), Expect = 4.190e-8
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 1
Query: 22 TVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLR 126
TVKWFN EK YGF D GEDVF+H+ SI+M G +
Sbjct: 5 TVKWFNSEKGYGFIAVDGGEDVFVHFSSIEMDGYK 39
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102300.365.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 1.84e-9 / Id = 61.90 Expect = 3.70e-9 / Id = 59.52 Expect = 7.27e-9 / Id = 58.14 Expect = 1.09e-8 / Id = 60.00 Expect = 1.47e-8 / Id = 64.10 Expect = 1.94e-8 / Id = 62.86 Expect = 2.08e-8 / Id = 52.38 Expect = 2.13e-8 / Id = 64.10 Expect = 3.17e-8 / Id = 52.38 Expect = 4.19e-8 / Id = 62.86 Sequence A0A357IBD8_9GAMM A0A352KLI8_9GAMM A0A7V2PUH6_9CHLR UPI001E5969DE A0A1E4ZWN7_9GAMM A0A1H0RPX6_MICTS A0A2M9E9Z1_9GAMM UPI001CE3EDC5 A0A1B3WBV0_9GAMM A0A6N7GPF5_9ACTN Pages
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Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig102300.365.1
>prot_P-canaliculata_contig102300.365.1 ID=prot_P-canaliculata_contig102300.365.1|Name=mRNA_P-canaliculata_contig102300.365.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=44bp
MSSKSEVTVKWFNVEKSYGFAVNDAGEDVFIHYRSIQMVGLRR* back to top mRNA from alignment at P-canaliculata_contig102300:594..793-
Legend: polypeptide CDS UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102300.365.1 ID=mRNA_P-canaliculata_contig102300.365.1|Name=mRNA_P-canaliculata_contig102300.365.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=200bp|location=Sequence derived from alignment at P-canaliculata_contig102300:594..793- (Pelvetia canaliculata dioecious)ATGAGCAGTAAATCCGAGGTAACCGTTAAATGGTTCAACGTAGAAAAGAG
CTACGGCTTTGCAGTCAATGACGCTGGCGAGGATGTCTTTATCCACTACC
GATCCATACAAATGGTTGGTTTAAGACGCTAG AGGAAGGCCAGAGAATCA
GATTCACCCAGGTTAGGTCAGAGAAAAGCTGGCAGGCTGCGGAAGTGCTG
back to top Coding sequence (CDS) from alignment at P-canaliculata_contig102300:594..793-
>mRNA_P-canaliculata_contig102300.365.1 ID=mRNA_P-canaliculata_contig102300.365.1|Name=mRNA_P-canaliculata_contig102300.365.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at P-canaliculata_contig102300:594..793- (Pelvetia canaliculata dioecious) back to top