mRNA_P-canaliculata_contig10230.364.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig10230.364.1 vs. uniprot
Match: D8LRD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRD9_ECTSI) HSP 1 Score: 238 bits (607), Expect = 3.690e-70 Identity = 110/169 (65.09%), Postives = 125/169 (73.96%), Query Frame = 1 Query: 1 CPPGTFLWQYGESSRNSCTPCKAGYYFPLQANAGPSIVSTPLECGNPGLFCPAGSVEPKTVGVGFYSVGGGLNGTTRVSQVLCEPGSYCREGLKFPCPRGTFGNSWGLHDEGCSGVCPPGAACPGETVDPITCEEGFYAVGGAVICNACPGRTARAV-GKRCRDSRGCC 504 CP GTF W+YGESSR SC PCKAGYY P +A PS +T + CGNP +FCP GSVEP V GFYSVGGG GTTRVSQVLCE G YC++ + CP GT+G+S GL DEGC+GVCPPGAAC TVDP CEEG+YA GGAV CNACPG+ + G+RCR SR CC Sbjct: 836 CPAGTFQWKYGESSRGSCLPCKAGYYCPPGESASPSRDATLVACGNPTVFCPEGSVEPVPVRAGFYSVGGGSEGTTRVSQVLCEAGYYCQDAARKLCPAGTYGSSAGLRDEGCTGVCPPGAACAEGTVDPTPCEEGYYATGGAVACNACPGKRVTGLEGERCRTSRSCC 1004
BLAST of mRNA_P-canaliculata_contig10230.364.1 vs. uniprot
Match: A0A6H5JG60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG60_9PHAE) HSP 1 Score: 211 bits (538), Expect = 9.720e-61 Identity = 110/215 (51.16%), Postives = 124/215 (57.67%), Query Frame = 1 Query: 1 CPPGTFLWQYGESSRNSCTPCK---------------AGYYFPLQANAGPSIVSTPLECGNPGLFCPAGSVEPKTVGVGFYSVGGGLNGTTRVSQ-------------------------------VLCEPGSYCREGLKFPCPRGTFGNSWGLHDEGCSGVCPPGAACPGETVDPITCEEGFYAVGGAVICNACPG-RTARAVGKRCRDSRGCC 504 CP GTF W+YGESSR SC PCK AGYY P +A PS+ + + CGNP +FCP GSVEP V GFYSVGGG G TRVSQ VLCE G YC++ + CP GT+G+S GL DEGC+GVCPPGAAC TVDP CEEG+YA GGAV CNACPG R A G+RCR SR CC Sbjct: 709 CPAGTFQWKYGESSRASCLPCKPPNPRLLPDVAMNTKAGYYCPPGESASPSLAAALVACGNPTVFCPEGSVEPVPVRAGFYSVGGGSEGNTRVSQASTTQLAPLLLRCPTRCLARHCLIISNSRSKVLCEAGYYCQDAARKLCPAGTYGSSAGLRDEGCTGVCPPGAACAEGTVDPTPCEEGYYATGGAVACNACPGKRVAGLEGERCRTSRSCC 923
BLAST of mRNA_P-canaliculata_contig10230.364.1 vs. uniprot
Match: A0A835Z6D3_9STRA (TNFR-Cys domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6D3_9STRA) HSP 1 Score: 149 bits (376), Expect = 3.070e-39 Identity = 83/194 (42.78%), Postives = 101/194 (52.06%), Query Frame = 1 Query: 1 CPPGTFLWQYGESSRNSCTPCKAGYYFPLQANAGPSIVSTPLECGNPGLFCPAGSVEPKTV---------------GVGFYSVG---GGLN--GTTRVSQVLCEPGSYCREGLKFPCPRGTFGNSWGLHDEGCSGVCPPGAACPGETVDPITCEEGFYAVGGAVICNACPGRTARA------VGKRCRDSRGCC 504 CPPGT+ W+YG + C PC AGY+ P A P++ P ECG P ++CP GS EP V GVG+YS G GL+ G TR +Q CEPG YCR G++ CP GT+G + GL+ CSG CP G ACP + P C G YA G+ C CP AR RCR SR CC Sbjct: 363 CPPGTYQWRYGAHDVSDCAPCPAGYFCPSYP-APPTVDPAPFECGGPDVYCPEGSSEPLPVKRRAVSQVPEMLHGCGVGYYSTGVAREGLDDGGATRSAQARCEPGYYCRGGIRTECPAGTYGATTGLNTPRCSGWCPAGHACPRGSAQPSACAAGRYAPQGSPDCYDCP-LDARPPXXXXLAAPRCRTSRLCC 554
BLAST of mRNA_P-canaliculata_contig10230.364.1 vs. uniprot
Match: A0A482UHX1_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UHX1_9ARCH) HSP 1 Score: 113 bits (283), Expect = 2.120e-26 Identity = 55/130 (42.31%), Postives = 76/130 (58.46%), Query Frame = 1 Query: 1 CPPGTFLWQYGESSRNSCTPCKAGYYFPLQANAGPSIVSTPLECGNPGLFCPAGSVEPKTVGVGFYSVGG-----GL-NGTTRVSQVLCEPGSYCREGLKFPCPRGTFGNSWGLHDEGCSGVCPPGAACP 372 CPPGT+ G SS C PC G+Y P ++ V+T ++CG+ ++CP GS P + G+Y+VGG GL TTRV++V CEPG+YC G++ CP GT+G + L+ CSG C G CP Sbjct: 203 CPPGTYSDVLGLSSAAGCLPCAPGFYCPYTNHS----VATAVQCGSAAVYCPLGSATPVSASPGYYTVGGYERQLGLPESTTRVTEVACEPGTYCERGIRRACPAGTYGATARLNSSACSGECERGHFCP 328
BLAST of mRNA_P-canaliculata_contig10230.364.1 vs. uniprot
Match: K3WNJ6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WNJ6_GLOUD) HSP 1 Score: 103 bits (256), Expect = 2.140e-22 Identity = 53/129 (41.09%), Postives = 67/129 (51.94%), Query Frame = 1 Query: 1 CPPGTFLWQYGESSRNSC-----TPCKAGYYFPLQANAGPSIVSTPLECGNPGLFCPAGSVEPKTVGVGFYSVGGGLNGTTRVSQVLCEPGSYCREGLKFPCPRGTFGNSWGLHDEGCSGVCPPGAACP 372 CP G + + GE+S S + C AG S+ ECG C GS P V G+YS+GGG + TTR Q CEPG +C++G+K+ CP GTFG + GLHD CSG C G CP Sbjct: 813 CPAGRYGDKVGETSPQSLFVRIISKC-AGXXXXXXXXXSGSVSPAERECGGADRMCRTGSSVPAVVSQGYYSIGGGASNTTRFHQRPCEPGYFCKDGIKYQCPEGTFGATSGLHDPMCSGYCAAGYCCP 940
BLAST of mRNA_P-canaliculata_contig10230.364.1 vs. uniprot
Match: D7FIP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIP6_ECTSI) HSP 1 Score: 102 bits (255), Expect = 2.840e-22 Identity = 63/151 (41.72%), Postives = 75/151 (49.67%), Query Frame = 1 Query: 1 CPPGTFLWQYGESSRNSCTPCKAGYYFPLQANAGPSIVSTPLECGNPGLFCPAGSVEPKTVGVGFYSVGGGLNGTTRVSQVLCEPGSYCREGLKFPCPRGTFGNSWGLHDEGCSG-----VCPPGAACP----GETVDPITCEEGFYAVGG 426 CPPGT +G +S + P AGYY +G + S CG PG FCP S P VG G Y+VGG + RV+Q C GSYC+EG+ FPCP GTFG+ GL CSG P P G+ V I C G Y V G Sbjct: 632 CPPGTVGSSHGLASPSCSGPSLAGYY------SGAAEASLGERCGGPGWFCPEASSSPSEVGAGNYTVGGPPD--RRVAQETCPAGSYCQEGVLFPCPPGTFGSLPGLSSSACSGPXXXXXXXPSGTSPSISTGKEVIGIACPAGRYGVEG 774
BLAST of mRNA_P-canaliculata_contig10230.364.1 vs. uniprot
Match: A0A2P4YK08_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YK08_9STRA) HSP 1 Score: 101 bits (252), Expect = 7.100e-22 Identity = 57/140 (40.71%), Postives = 74/140 (52.86%), Query Frame = 1 Query: 1 CPPGTFLWQYGESSRNSCTPCKAGYYFPLQANAGPSIVSTPLECGNPGLFCPAGSVEPKTVGVGFYSVGGGLNGTTRVSQVLCEPGSYCREGLKFPCPRGTFGNSWGLHDEGCSGVCPPGAACPGETVDPITCEEGFYAV 420 CP G + Q GE+S C GY P +++ ST LECG C +GS P+ V G+YS+G TTR Q CE GS+C +G+K+PCP GTFG + GL CSG C PG CP ++ E G +V Sbjct: 541 CPVGRYGDQSGETSPLCAGLCSRGYRCPEGSSS-----STQLECGGSNFVCGSGSPAPQLVHPGYYSIG--PTATTRFFQQPCELGSFCIDGVKYPCPAGTFGATSGLSTAACSGKCAPGYYCPPSSISRTQNECGSSSV 673
BLAST of mRNA_P-canaliculata_contig10230.364.1 vs. uniprot
Match: K0SWJ8_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SWJ8_THAOC) HSP 1 Score: 100 bits (250), Expect = 1.280e-21 Identity = 55/157 (35.03%), Postives = 76/157 (48.41%), Query Frame = 1 Query: 1 CPPGTFLWQYGESSRNSCTPCKAGYYFPLQANAGPSIVSTPLECGNPGLFCPAGSVEPKTVGVGFYSVGGGLNGTTRVSQVLCEPGSYCREGLKFPCPRGTFGNSWGLHDEGCSGVCPPGAACPGETVD-------------------PITCEEGFY 414 CP G+F + E+ C+ G++ G S T CG P ++CP GS P+ V G+Y+ N + +Q+LC PGSYCREGL+ PCP FG+S G HD C GVC PG CP ++ PI ++G+Y Sbjct: 380 CPRGSFGDRQKETYHQCSGLCEPGFF----CEEG-SPTPTQYACGGPDVYCPRGSSAPQYVREGYYTP---ENEEHKTTQILCPPGSYCREGLRIPCPASRFGSSSGQHDAHCDGVCEPGYFCPSDSTSSTQTPCGNSSVYCPEASATPIIVDQGYY 528
BLAST of mRNA_P-canaliculata_contig10230.364.1 vs. uniprot
Match: A0A6G0XDF0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XDF0_9STRA) HSP 1 Score: 100 bits (248), Expect = 2.540e-21 Identity = 55/158 (34.81%), Postives = 79/158 (50.00%), Query Frame = 1 Query: 1 CPPGTF----------LWQYGESSRNSCTPCKA----GYY------FPLQANAGPSIVSTPLECGNPGLFCPAGSVEPKTVGVGFYSVGGGLNGTTRVSQVLCEPGSYCREGLKFPCPRGTFGNSWGLHDEGCSGVCPPGAACPGETVDPITCEEGFY 414 CPPG++ L +YG S + + C G+Y P+ + S++ +EC NP +CPA + P V GFY++ R Q+ CEPG+YC G++ PCP GTFGN+ GL D CSG+C PG CP + + C + Y Sbjct: 350 CPPGSYCIHGQIFACPLGRYGNESGLALSTCSGVCPQGHYCPVGTVHPVSDSPQVSLIFFQVECVNPATYCPAEASAPVAVTAGFYTL---PKDGPRSKQLQCEPGTYCVHGIQAPCPSGTFGNTSGLTDASCSGLCSPGYNCPTGSSLGLECGDSRY 504
BLAST of mRNA_P-canaliculata_contig10230.364.1 vs. uniprot
Match: A0A7S2DMF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DMF6_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 1.340e-20 Identity = 57/149 (38.26%), Postives = 71/149 (47.65%), Query Frame = 1 Query: 1 CPPGTFL----------WQYGESS---RNSCTP-CKAGYYFPLQANAGPSIVSTPLECGNPGLFCPAGSVEPKTVGVGFYSVGGG-----------LNGTTRVSQVLCEPGSYCREGLKFPCPRGTFGNSWGLHDEGCSGVCPPGAACP 372 CPPG + +YG S+ C C AGYY P S+ +CGN ++CP GS P GFY+V G LN TT +Q LCEPG +C EG+K+ CP G +G S+GL CSG C PG CP Sbjct: 101 CPPGHYCIGGVRQECEAGRYGSSAGLYHADCDGLCFAGYYCPRA-----SVAMDQRQCGNASVYCPTGSARPIIALPGFYTVHTGPYQGRLMLSDPLN-TTTSAQALCEPGHWCAEGIKYQCPAGRYGLSYGLSSRECSGPCAPGYRCP 243 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10230.364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10230.364.1 >prot_P-canaliculata_contig10230.364.1 ID=prot_P-canaliculata_contig10230.364.1|Name=mRNA_P-canaliculata_contig10230.364.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=170bp CPPGTFLWQYGESSRNSCTPCKAGYYFPLQANAGPSIVSTPLECGNPGLFback to top mRNA from alignment at P-canaliculata_contig10230:10308..11493- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10230.364.1 ID=mRNA_P-canaliculata_contig10230.364.1|Name=mRNA_P-canaliculata_contig10230.364.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1186bp|location=Sequence derived from alignment at P-canaliculata_contig10230:10308..11493- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10230:10308..11493- >mRNA_P-canaliculata_contig10230.364.1 ID=mRNA_P-canaliculata_contig10230.364.1|Name=mRNA_P-canaliculata_contig10230.364.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at P-canaliculata_contig10230:10308..11493- (Pelvetia canaliculata dioecious)back to top |