mRNA_P-canaliculata_contig10226.359.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10226.359.1 vs. uniprot
Match: D7FKW1_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW1_ECTSI) HSP 1 Score: 137 bits (345), Expect = 2.010e-38 Identity = 69/90 (76.67%), Postives = 82/90 (91.11%), Query Frame = 1 Query: 4 MHLARQDQDLEELGTHVERVGETANIINEELREQNRMLTALDEDLEETTERMNFVMGRLGKLLKTKSKCQIWTVVILSCLFIIMVFLVIY 273
M LARQD+DLEELGTHVERVGETA +INEELR QNR+LTALD+D++E TE MNFVMGRLGKLLKTKSKCQIWT+++LS + II+V ++IY
Sbjct: 161 MQLARQDEDLEELGTHVERVGETATVINEELRSQNRLLTALDDDMDEATESMNFVMGRLGKLLKTKSKCQIWTILLLSFILIILVLMLIY 250
BLAST of mRNA_P-canaliculata_contig10226.359.1 vs. uniprot
Match: A0A7S2S2P5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2P5_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 9.640e-24 Identity = 54/91 (59.34%), Postives = 67/91 (73.63%), Query Frame = 1 Query: 4 MHLARQDQDLEELGTHVERVGETANIINEELREQNRMLTALDEDLEETTERMNFVMGRLGKLLKTKSKCQIWTVVILSCLFIIMVFLVIYT 276
M + +QD+DLEELG V+RV + A IN EL+ QNRML L+ DL+E TE+MNFVMG+L KLLKTK CQIWTV+IL +FL+IYT
Sbjct: 72 MIMEQQDEDLEELGYAVDRVNDMAVGINTELKTQNRMLKDLESDLDEATEKMNFVMGKLAKLLKTKDTCQIWTVIILFFXXXXXIFLLIYT 162
BLAST of mRNA_P-canaliculata_contig10226.359.1 vs. uniprot
Match: A0A7S2FMQ2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FMQ2_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 1.700e-23 Identity = 54/92 (58.70%), Postives = 69/92 (75.00%), Query Frame = 1 Query: 1 QMHLARQDQDLEELGTHVERVGETANIINEELREQNRMLTALDEDLEETTERMNFVMGRLGKLLKTKSKCQIWTVVILSCLFIIMVFLVIYT 276
QM + +QD++LEELG V+RV + A INEEL+ QN+ML L+ED++E E+MNFVMG++ KLLKTK CQIWTV+IL VFLVIYT
Sbjct: 155 QMIIRQQDEELEELGYAVDRVNDMAVGINEELKVQNQMLKTLEEDIDEAAEKMNFVMGKMAKLLKTKDTCQIWTVIILVXXXXXXVFLVIYT 246
BLAST of mRNA_P-canaliculata_contig10226.359.1 vs. uniprot
Match: A0A7S2S2M2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2M2_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 6.670e-23 Identity = 54/91 (59.34%), Postives = 67/91 (73.63%), Query Frame = 1 Query: 4 MHLARQDQDLEELGTHVERVGETANIINEELREQNRMLTALDEDLEETTERMNFVMGRLGKLLKTKSKCQIWTVVILSCLFIIMVFLVIYT 276
M + +QD+DLEELG V+RV + A IN EL+ QNRML L+ DL+E TE+MNFVMG+L KLLKTK CQIWTV+IL +FL+IYT
Sbjct: 156 MIMEQQDEDLEELGYAVDRVNDMAVGINTELKTQNRMLKDLESDLDEATEKMNFVMGKLAKLLKTKDTCQIWTVIILFFXXXXXIFLLIYT 246
BLAST of mRNA_P-canaliculata_contig10226.359.1 vs. uniprot
Match: A0A836CAK7_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAK7_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 1.090e-21 Identity = 52/90 (57.78%), Postives = 62/90 (68.89%), Query Frame = 1 Query: 7 HLARQDQDLEELGTHVERVGETANIINEELREQNRMLTALDEDLEETTERMNFVMGRLGKLLKTKSKCQIWTVVILSCLFIIMVFLVIYT 276
H+ARQDQDLEELG HV+RVG A INEELR+Q RML L+ED+ T E M VMG + K+LKTK + QIW +V L FLV+YT
Sbjct: 160 HIARQDQDLEELGEHVDRVGMHAETINEELRDQGRMLDDLNEDIVTTHESMGMVMGAMAKILKTKDRAQIWLIVTLVVXXXXXXFLVVYT 249
BLAST of mRNA_P-canaliculata_contig10226.359.1 vs. uniprot
Match: A0A067BS24_SAPPC (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BS24_SAPPC) HSP 1 Score: 93.6 bits (231), Expect = 2.150e-21 Identity = 49/92 (53.26%), Postives = 68/92 (73.91%), Query Frame = 1 Query: 1 QMHLARQDQDLEELGTHVERVGETANIINEELREQNRMLTALDEDLEETTERMNFVMGRLGKLLKTKSKCQIWTVVILSCLFIIMVFLVIYT 276
Q + QD+DL+EL T V R+G+ A IN E++ QN ML +D DL++TTERMNFVMG++ +LLKTK CQ+ ++ L+ + +IMVFLVIYT
Sbjct: 158 QQIIKEQDKDLDELHTSVSRLGQVAVTINSEIKSQNDMLKDVDADLDDTTERMNFVMGKMSRLLKTKDTCQLGGIIFLTIVLLIMVFLVIYT 249
BLAST of mRNA_P-canaliculata_contig10226.359.1 vs. uniprot
Match: A0A8J2AWH8_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2AWH8_9DINO) HSP 1 Score: 89.4 bits (220), Expect = 1.660e-19 Identity = 47/87 (54.02%), Postives = 65/87 (74.71%), Query Frame = 1 Query: 10 LARQDQDLEELGTHVERVGETANIINEELREQNRMLTALDEDLEETTERMNFVMGRLGKLLKTKSKCQIWTVVILSCLFIIMVFLVI 270
+A+QD+ L EL ER+ +TA +IN EL EQ RMLT LDED++ TE+MNFVM RLG L+KT + Q+WT++IL C+F+ ++ LVI
Sbjct: 199 VAKQDEQLNELSKCTERLNQTALVINTELNEQARMLTELDEDIDRETEKMNFVMRRLGILMKTSNSKQLWTILILFCVFMFLLMLVI 285
BLAST of mRNA_P-canaliculata_contig10226.359.1 vs. uniprot
Match: A0A813HEU1_POLGL (Hypothetical protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HEU1_POLGL) HSP 1 Score: 84.0 bits (206), Expect = 4.570e-19 Identity = 43/89 (48.31%), Postives = 66/89 (74.16%), Query Frame = 1 Query: 10 LARQDQDLEELGTHVERVGETANIINEELREQNRMLTALDEDLEETTERMNFVMGRLGKLLKTKSKCQIWTVVILSCLFIIMVFLVIYT 276
+++QD+ L++L +R+G TA IIN ELREQ +ML ALDED+++ TE++NFVM R+G+LLKT Q+ ++ L L ++++FLVI T
Sbjct: 20 VSQQDEALDQLSASAQRLGNTAQIINSELREQQKMLEALDEDIDKETEKLNFVMKRMGRLLKTSDNKQLCLIIGLIALIVVLIFLVINT 108
BLAST of mRNA_P-canaliculata_contig10226.359.1 vs. uniprot
Match: A0A1V9ZQ80_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQ80_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 4.870e-19 Identity = 48/92 (52.17%), Postives = 65/92 (70.65%), Query Frame = 1 Query: 1 QMHLARQDQDLEELGTHVERVGETANIINEELREQNRMLTALDEDLEETTERMNFVMGRLGKLLKTKSKCQIWTVVILSCLFIIMVFLVIYT 276
Q + QD L++L T V R+G A IN E++ QN ML ++ DL++TTERMNFVM R+ KLLKTK CQ+ ++IL+ + +IMVFLVIYT
Sbjct: 157 QQIIKEQDTSLDQLHTSVTRIGHVAVAINTEIKSQNVMLKDVEADLDDTTERMNFVMARMSKLLKTKDTCQLSGIIILTIVLMIMVFLVIYT 248
BLAST of mRNA_P-canaliculata_contig10226.359.1 vs. uniprot
Match: A0A8J2EUW4_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2EUW4_9DINO) HSP 1 Score: 86.3 bits (212), Expect = 1.870e-18 Identity = 44/87 (50.57%), Postives = 64/87 (73.56%), Query Frame = 1 Query: 10 LARQDQDLEELGTHVERVGETANIINEELREQNRMLTALDEDLEETTERMNFVMGRLGKLLKTKSKCQIWTVVILSCLFIIMVFLVI 270
++RQD+ L EL ER+ +TA +IN EL EQ RMLT LDED++ TE++NFV+ RLG L+KT Q+WT+++L C+F+ ++ LVI
Sbjct: 181 VSRQDEQLAELSKTTERLNQTALVINTELTEQARMLTELDEDIDRETEKLNFVLRRLGILMKTSDSKQLWTILVLFCIFMFLLMLVI 267 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10226.359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10226.359.1 >prot_P-canaliculata_contig10226.359.1 ID=prot_P-canaliculata_contig10226.359.1|Name=mRNA_P-canaliculata_contig10226.359.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=92bp MHLARQDQDLEELGTHVERVGETANIINEELREQNRMLTALDEDLEETTEback to top mRNA from alignment at P-canaliculata_contig10226:6622..7921- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10226.359.1 ID=mRNA_P-canaliculata_contig10226.359.1|Name=mRNA_P-canaliculata_contig10226.359.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1300bp|location=Sequence derived from alignment at P-canaliculata_contig10226:6622..7921- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10226:6622..7921- >mRNA_P-canaliculata_contig10226.359.1 ID=mRNA_P-canaliculata_contig10226.359.1|Name=mRNA_P-canaliculata_contig10226.359.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at P-canaliculata_contig10226:6622..7921- (Pelvetia canaliculata dioecious)back to top |